mRNA_L-elsbetiae_contig14314.3194.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14314.3194.1
Unique NamemRNA_L-elsbetiae_contig14314.3194.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14314.3194.1 vs. uniprot
Match: D7FPM3_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM3_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 4.240e-28
Identity = 69/135 (51.11%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    4 CNARDGYSRTGLHWAATTGQADWISALIRAGGDPNAADIRQVPPLQDAIEAEHADAVRSLLEGGADKDVRLDGDIGGNGDGG---GTPLVLAAVRGNSEIVRLLCAAGAGLEGNDGVGFSALMTAVAHRHLGVAE 399
            C+ARD + RT LHWA+TTGQADWISALIRAG DP                                K+ RL G+ GG        GTPL+LAA  GN+EI  LLC AGA LE  DG+ F+ALMTAVAHRHLGV E
Sbjct:  141 CDARDEHLRTALHWASTTGQADWISALIRAGADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNFRLGGNTGGGAXXXXXXGTPLILAAREGNAEIASLLCDAGAALEERDGINFTALMTAVAHRHLGVTE 275          
BLAST of mRNA_L-elsbetiae_contig14314.3194.1 vs. uniprot
Match: A0A6H5JA21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA21_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.030e-22
Identity = 60/120 (50.00%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    4 CNARDGYSRTGLHWAATTGQADWISALIRAGGDPNAADIRQVPPLQDAIEAEHADAVRSLLEGGADKDVRLDGDIGGNGDGGGTPLVLAAVRGNSEIVRLLCAAGAGLEGNDGVGFSALM 363
            C+ARD   RT LHW +TTGQADWISALIRAG DP                                K+ RL    G  GDGG TPL+LAA  GN+EI RLLC AGA LE  DG+GF+ALM
Sbjct:  178 CDARDERLRTALHWGSTTGQADWISALIRAGADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNFRLSDGAGYGGDGG-TPLILAAREGNAEIARLLCDAGASLEDRDGIGFTALM 296          
BLAST of mRNA_L-elsbetiae_contig14314.3194.1 vs. uniprot
Match: A0A8J8WHC9_9EURO (Uncharacterized protein n=1 Tax=Penicillium sp. RFL-2021a TaxID=2839758 RepID=A0A8J8WHC9_9EURO)

HSP 1 Score: 65.9 bits (159), Expect = 9.220e-10
Identity = 48/127 (37.80%), Postives = 67/127 (52.76%), Query Frame = 1
Query:   49 ATTGQADW-ISALIRAGGDPNAADIRQVPPLQDAIEAEHADAVRSLLEGGADKDVRLDGDIGGNGDGGGTPLVLAAVRGNSEIVRLLCAA-GAGLEGNDGVGFSALMTAVAHRHLGVAEVLLEHGAD 423
            A   Q DW I  L+R G D NA + R++  L ++I  E +DA+R LL  GAD +     D+         PL+LAA +G+ E+V+LL     A LE  D VG +AL  A    H+    +LL  GA+
Sbjct:  797 AARSQCDWAIQVLLRRGADINALNDRKISALTESIILEDSDAIRMLLNHGADCNGDRTPDV--------RPLLLAAQQGSIEMVQLLVLGYKANLESEDSVGMTALHRATHKDHVDTVRILLSEGAE 915          
BLAST of mRNA_L-elsbetiae_contig14314.3194.1 vs. uniprot
Match: A0A8J9UWK9_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UWK9_BRAAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.820e-9
Identity = 48/142 (33.80%), Postives = 67/142 (47.18%), Query Frame = 1
Query:    1 DCNARDG-YSRTGLHWAATTGQADWISALIRAGGDPNAADIRQVPPLQDAIEAEHADAVRSLLEGGADKDVRLDGDIGGNGDGGGTPLVLAAVRGNSEIVRLLCAAGAGLEGNDGVGFSALMTAVAHRHLGVAEVLLEHGAD 423
            D N R   Y+RT LH AA TG  +    L+    D +A DI    PL  A+   H +  + L+  GAD ++R       +     T L  AA   N EI ++L +  A ++  D  G+S LM AV   H   A+ L+  GAD
Sbjct: 3284 DVNLRSSKYNRTALHDAAATGNVEIAKVLLSKDADIDAQDINGYSPLMFAVNKNHTETAKFLINHGADVNLR-------SSKYNSTALHDAAATENVEIAKVLLSKDADIDAQDINGYSPLMFAVIKNHTETAKFLINKGAD 3418          
BLAST of mRNA_L-elsbetiae_contig14314.3194.1 vs. uniprot
Match: A0A3L8D7V2_OOCBI (Asparaginase n=4 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A3L8D7V2_OOCBI)

HSP 1 Score: 62.4 bits (150), Expect = 1.410e-8
Identity = 46/134 (34.33%), Postives = 62/134 (46.27%), Query Frame = 1
Query:   28 RTGLHWAATTGQADWISALIRAGGDPNAADIRQVPPLQDAIEAEHADAVRSLLEGGADKDVRLDGDIGGNGDGGGTPLVLAAVRGNSEIVRLLCAAGAGLEGNDGVGFSALMTAVAHRHLGVAEVLLEHGADAD 429
            RT LH A   G    +  L++ G + +  D     PL DAIE +H + ++ LL+ GA         + GN    G  +  AA  GN + +R    AGA L   D  G + L  A  H H    E LL+HGAD D
Sbjct:  468 RTALHIACCVGDVKVVRHLLKMGANVHIKDHFDRTPLTDAIEHDHHEIIKVLLQCGAH--------LHGNAQLIGERMCAAATAGNMKRLRSFLLAGADLSQKDFGGRTPLHFAALHNHAEAIEFLLDHGADLD 593          
BLAST of mRNA_L-elsbetiae_contig14314.3194.1 vs. uniprot
Match: A0A6I9TK42_SESIN (Potassium channel n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TK42_SESIN)

HSP 1 Score: 59.3 bits (142), Expect = 1.730e-7
Identity = 40/141 (28.37%), Postives = 70/141 (49.65%), Query Frame = 1
Query:    7 NARDGYSRTGLHWAATTGQADWISALIRAGGDPNAADIRQVPPLQDAIEAEHADAVRSLLEGGADKDVRLDGDIGGNGDGGGTPLVLAAVRGNSEIVRLLCAAGAGLEGNDGVGFSALMTAVAHRHLGVAEVLLEHGADAD 429
            N  D   R+ LH AA  G  + +  L+  G DPN  D     PL DA+  +H   +++L++ GA       GD+G            AA + + ++++ +   G  +   +G+G +AL TA++  ++ + + L+E GAD D
Sbjct:  560 NELDSNGRSALHLAAAKGNLECVLLLLDYGADPNRRDSEGNVPLWDALLGKHEPVIKALVDNGA---TLSSGDVG-------QFACFAAEQNDLDLLKQITKFGGDVTLLNGLGTTALHTAISEENIEIIKFLIEQGADID 690          
BLAST of mRNA_L-elsbetiae_contig14314.3194.1 vs. uniprot
Match: UPI0006234AE5 (L-asparaginase-like n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI0006234AE5)

HSP 1 Score: 57.0 bits (136), Expect = 1.060e-6
Identity = 42/132 (31.82%), Postives = 62/132 (46.97%), Query Frame = 1
Query:   28 RTGLHWAATTGQADWISALIRAGGDPNAADIRQVPPLQDAIEAEHADAVRSLLEGGADKDVRLDGDIGGNGDGGGTPLVLAAVRGNSEIVRLLCAAGAGLEGNDGVGFSALMTAVAHRHLGVAEVLLEHGAD 423
            RT LH A   G  + +  L++ G + +  D     PL DAIE +H + ++ LL+ GA         + GN    G  +  AA  GN + ++    +GA L   +  G + L  A  H H    E LL+HGAD
Sbjct:  471 RTALHIACCEGDINVVRRLLKMGANVHVKDRFDRTPLTDAIEYDHHEIIKVLLQCGAH--------LHGNALLIGARMCAAATAGNKKRLQSYLLSGADLSQKNASGCTPLHFAALHDHAETIEFLLDHGAD 594          
BLAST of mRNA_L-elsbetiae_contig14314.3194.1 vs. uniprot
Match: A0A8I1USG7_9SPHN (Ankyrin repeat domain-containing protein n=1 Tax=Altererythrobacter sp. TaxID=1872480 RepID=A0A8I1USG7_9SPHN)

HSP 1 Score: 54.3 bits (129), Expect = 3.310e-6
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    7 NARDGYS-RTGLHWAATTGQADWISALIRAGGDPNAADIRQVPPLQDAIEAEHADAVRSLLEGGADKDVRLDGDIGGNGDGGGTPLVLAAVRGNSEIVRLLCAAGAGLEGNDGVGFSA 357
            NARD  S RT  H A       W++ +   GG+PN AD R V P+  A +    + +++L++ GA    R+D +    G+   TPL+ A  R +++++RLL AAGA  +  D  G SA
Sbjct:   41 NARDLSSGRTAFHIAVARRDVVWVNYIAAQGGNPNIADGRGVTPIMLAGQLGWPEGIQALIDAGA----RVD-EPNSTGE---TPLISAVHRRDTQMMRLLLAAGADPDRTDNSGRSA 150          
BLAST of mRNA_L-elsbetiae_contig14314.3194.1 vs. uniprot
Match: UPI00084C1036 (L-asparaginase n=1 Tax=Atta colombica TaxID=520822 RepID=UPI00084C1036)

HSP 1 Score: 55.5 bits (132), Expect = 3.500e-6
Identity = 44/132 (33.33%), Postives = 63/132 (47.73%), Query Frame = 1
Query:   28 RTGLHWAATTGQADWISALIRAGGDPNAADIRQVPPLQDAIEAEHADAVRSLLEGGADKDVRLDGDIGGNGDGGGTPLVLAAVRGNSEIVRLLCAAGAGLEGNDGVGFSALMTAVAHRHLGVAEVLLEHGAD 423
            RT LH A   G    +  L++ G + +  D     PL DAIE +H + +R LL+ GA     L GD     +     + +AA  GN++ ++    AGA L   +  G + L  A  H H    E LL+HGAD
Sbjct:  346 RTALHIACCEGDLKVVRRLLKMGANVHIKDRFDHTPLTDAIEYDHHEIIRILLQCGA----HLHGDAVLISE----KMCMAATAGNTKRLQSYLLAGADLSQKNFSGRTPLHFAALHDHTEAIEFLLDHGAD 469          
BLAST of mRNA_L-elsbetiae_contig14314.3194.1 vs. uniprot
Match: A0A158NTI4_ATTCE (Asparaginase n=7 Tax=Attini TaxID=143999 RepID=A0A158NTI4_ATTCE)

HSP 1 Score: 54.7 bits (130), Expect = 6.750e-6
Identity = 44/132 (33.33%), Postives = 63/132 (47.73%), Query Frame = 1
Query:   28 RTGLHWAATTGQADWISALIRAGGDPNAADIRQVPPLQDAIEAEHADAVRSLLEGGADKDVRLDGDIGGNGDGGGTPLVLAAVRGNSEIVRLLCAAGAGLEGNDGVGFSALMTAVAHRHLGVAEVLLEHGAD 423
            RT LH A   G    +  L++ G + +  D     PL DAIE +H + +R LL+ GA     L GD     +     + +AA  GN++ ++    AGA L   +  G + L  A  H H    E LL+HGAD
Sbjct:  487 RTALHIACCEGDLKVVRRLLKMGANVHIKDRFDHTPLTDAIEYDHHEIIRILLQCGA----HLHGDAVLISE----KMCMAATAGNTKRLQSYLLAGADLSQKNFSGRTPLHFASLHDHTEAIEFLLDHGAD 610          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14314.3194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FPM3_ECTSI4.240e-2851.11Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JA21_9PHAE2.030e-2250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J8WHC9_9EURO9.220e-1037.80Uncharacterized protein n=1 Tax=Penicillium sp. RF... [more]
A0A8J9UWK9_BRAAE1.820e-933.80Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
A0A3L8D7V2_OOCBI1.410e-834.33Asparaginase n=4 Tax=Ooceraea biroi TaxID=2015173 ... [more]
A0A6I9TK42_SESIN1.730e-728.37Potassium channel n=1 Tax=Sesamum indicum TaxID=41... [more]
UPI0006234AE51.060e-631.82L-asparaginase-like n=1 Tax=Linepithema humile Tax... [more]
A0A8I1USG7_9SPHN3.310e-635.59Ankyrin repeat domain-containing protein n=1 Tax=A... [more]
UPI00084C10363.500e-633.33L-asparaginase n=1 Tax=Atta colombica TaxID=520822... [more]
A0A158NTI4_ATTCE6.750e-633.33Asparaginase n=7 Tax=Attini TaxID=143999 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14314contigL-elsbetiae_contig14314:903..1331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue6.2e-25
Seed eggNOG ortholog2880.D7FPM3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.8340495-CDS-L-elsbetiae_contig14314:902..13311622815571.8340495-CDS-L-elsbetiae_contig14314:902..1331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14314 903..1331 -
1691682966.6716442-CDS-L-elsbetiae_contig14314:902..13311691682966.6716442-CDS-L-elsbetiae_contig14314:902..1331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14314 903..1331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14314.3194.1prot_L-elsbetiae_contig14314.3194.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14314 903..1331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14314.3194.1

>prot_L-elsbetiae_contig14314.3194.1 ID=prot_L-elsbetiae_contig14314.3194.1|Name=mRNA_L-elsbetiae_contig14314.3194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
DCNARDGYSRTGLHWAATTGQADWISALIRAGGDPNAADIRQVPPLQDAI
EAEHADAVRSLLEGGADKDVRLDGDIGGNGDGGGTPLVLAAVRGNSEIVR
LLCAAGAGLEGNDGVGFSALMTAVAHRHLGVAEVLLEHGADAD
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mRNA from alignment at L-elsbetiae_contig14314:903..1331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14314.3194.1 ID=mRNA_L-elsbetiae_contig14314.3194.1|Name=mRNA_L-elsbetiae_contig14314.3194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=429bp|location=Sequence derived from alignment at L-elsbetiae_contig14314:903..1331- (Laminarionema elsbetiae ELsaHSoW15)
GACTGCAACGCCAGGGACGGCTACAGCAGGACGGGCCTCCACTGGGCGGC CACTACCGGCCAGGCGGACTGGATCTCCGCGCTGATCCGCGCCGGGGGCG ACCCCAACGCCGCCGACATCCGGCAGGTGCCCCCGCTCCAGGACGCGATA GAGGCCGAGCACGCCGACGCCGTCCGCAGCCTGCTGGAGGGCGGGGCCGA CAAGGACGTGCGGCTGGACGGGGATATCGGGGGCAACGGCGACGGCGGCG GGACTCCGCTCGTTCTCGCGGCGGTGCGGGGGAACTCGGAGATCGTGAGG CTGCTCTGCGCCGCCGGCGCGGGCTTGGAGGGGAATGACGGCGTCGGCTT CAGCGCGCTCATGACGGCGGTGGCGCACCGGCACCTCGGGGTGGCGGAGG TGCTGCTTGAGCACGGGGCGGACGCGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14314:903..1331-

>mRNA_L-elsbetiae_contig14314.3194.1 ID=mRNA_L-elsbetiae_contig14314.3194.1|Name=mRNA_L-elsbetiae_contig14314.3194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig14314:903..1331- (Laminarionema elsbetiae ELsaHSoW15)
GACTGCAACGCCAGGGACGGCTACAGCAGGACGGGCCTCCACTGGGCGGC
CACTACCGGCCAGGCGGACTGGATCTCCGCGCTGATCCGCGCCGGGGGCG
ACCCCAACGCCGCCGACATCCGGCAGGTGCCCCCGCTCCAGGACGCGATA
GAGGCCGAGCACGCCGACGCCGTCCGCAGCCTGCTGGAGGGCGGGGCCGA
CAAGGACGTGCGGCTGGACGGGGATATCGGGGGCAACGGCGACGGCGGCG
GGACTCCGCTCGTTCTCGCGGCGGTGCGGGGGAACTCGGAGATCGTGAGG
CTGCTCTGCGCCGCCGGCGCGGGCTTGGAGGGGAATGACGGCGTCGGCTT
CAGCGCGCTCATGACGGCGGTGGCGCACCGGCACCTCGGGGTGGCGGAGG
TGCTGCTTGAGCACGGGGCGGACGCGGACGACTGCAACGCCAGGGACGGC
TACAGCAGGACGGGCCTCCACTGGGCGGCCACTACCGGCCAGGCGGACTG
GATCTCCGCGCTGATCCGCGCCGGGGGCGACCCCAACGCCGCCGACATCC
GGCAGGTGCCCCCGCTCCAGGACGCGATAGAGGCCGAGCACGCCGACGCC
GTCCGCAGCCTGCTGGAGGGCGGGGCCGACAAGGACGTGCGGCTGGACGG
GGATATCGGGGGCAACGGCGACGGCGGCGGGACTCCGCTCGTTCTCGCGG
CGGTGCGGGGGAACTCGGAGATCGTGAGGCTGCTCTGCGCCGCCGGCGCG
GGCTTGGAGGGGAATGACGGCGTCGGCTTCAGCGCGCTCATGACGGCGGT
GGCGCACCGGCACCTCGGGGTGGCGGAGGTGCTGCTTGAGCACGGGGCGG
ACGCGGAC
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