mRNA_L-elsbetiae_contig14311.3193.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14311.3193.1
Unique NamemRNA_L-elsbetiae_contig14311.3193.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14311.3193.1 vs. uniprot
Match: D8LEK7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK7_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 1.200e-79
Identity = 117/123 (95.12%), Postives = 120/123 (97.56%), Query Frame = 1 
Query:    1 FRFILNYLRDNYIGLESFGKEDLHFLEELSHEAQFFNIAGLCSDVSRRMSDIARQHREGPSGDKDFRLVQCSKGQIQELFHEWVIEKNYEFECMQIVEDTAYIVLGRRVSRGELALVERLMKT 369
            FR ILNYLRD+YIGLESFGKEDLHFLEELSHEAQFFNIAGLCSD+SRRMSDIARQHREGPSGDKDFRLVQCS GQIQ+LFHEWVIEKNYEFECMQIV DTAYIVLGRRVSRGELALVERLMKT
Sbjct:   89 FRHILNYLRDSYIGLESFGKEDLHFLEELSHEAQFFNIAGLCSDISRRMSDIARQHREGPSGDKDFRLVQCSTGQIQDLFHEWVIEKNYEFECMQIVGDTAYIVLGRRVSRGELALVERLMKT 211
[Close]
BLAST of mRNA_L-elsbetiae_contig14311.3193.1 vs. uniprot
Match: A0A6H5L801_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L801_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 1.670e-77
Identity = 116/123 (94.31%), Postives = 119/123 (96.75%), Query Frame = 1 
Query:    1 FRFILNYLRDNYIGLESFGKEDLHFLEELSHEAQFFNIAGLCSDVSRRMSDIARQHREGPSGDKDFRLVQCSKGQIQELFHEWVIEKNYEFECMQIVEDTAYIVLGRRVSRGELALVERLMKT 369
            FR ILNYLRD+YIGLESFGKEDLHFLEELSHEAQFFNIAGLCSD+SRRMSDI RQHREGPSGDKDFRLVQCS GQIQ+LFHEWVIEKNYEFECMQIV DTAYIVLGRRVSRGELALVERLMKT
Sbjct:  200 FRHILNYLRDSYIGLESFGKEDLHFLEELSHEAQFFNIAGLCSDISRRMSDIVRQHREGPSGDKDFRLVQCSTGQIQDLFHEWVIEKNYEFECMQIVGDTAYIVLGRRVSRGELALVERLMKT 322
[Close]
BLAST of mRNA_L-elsbetiae_contig14311.3193.1 vs. uniprot
Match: A0A835ZDQ6_9STRA (BTB_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDQ6_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.980e-47
Identity = 76/123 (61.79%), Postives = 95/123 (77.24%), Query Frame = 1 
Query:    1 FRFILNYLRDNYIGLESFGKEDLHFLEELSHEAQFFNIAGLCSDVSRRMSDIARQHREGPSGDKDFRLVQCSKGQIQELFHEWVIEKNYEFECMQIVEDTAYIVLGRRVSRGELALVERLMKT 369
            FR ILNYLR N + LE  G E L FL+EL  EAQ+FNI GLC +++RR+++I R+ +E  S DKDFRL++C    +Q++FHEWVIEKNYEFE MQ+ +D   +VL RRVSRGELALVERLMKT
Sbjct:   45 FRHILNYLRGNRMNLECRGAESLAFLDELLLEAQYFNINGLCEELARRIAEITRRQKEEASEDKDFRLIKCDVCDVQDVFHEWVIEKNYEFESMQVCDDLCLVVLARRVSRGELALVERLMKT 167
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14311.3193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEK7_ECTSI1.200e-7995.12BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L801_9PHAE1.670e-7794.31BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZDQ6_9STRA2.980e-4761.79BTB_2 domain-containing protein n=1 Tax=Tribonema ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14311contigL-elsbetiae_contig14311:1716..4346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBTB/POZ fold
Ec32 orthologEc-23_002650.1
Exons3
Model size372
Cds size372
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14311.3193.1prot_L-elsbetiae_contig14311.3193.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14311 1716..4346 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.768985-CDS-L-elsbetiae_contig14311:1715..18561622815571.768985-CDS-L-elsbetiae_contig14311:1715..1856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14311 1716..1856 -
1691682966.6337862-CDS-L-elsbetiae_contig14311:1715..18561691682966.6337862-CDS-L-elsbetiae_contig14311:1715..1856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14311 1716..1856 -
1622815571.7793336-CDS-L-elsbetiae_contig14311:2435..25231622815571.7793336-CDS-L-elsbetiae_contig14311:2435..2523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14311 2436..2523 -
1691682966.6474545-CDS-L-elsbetiae_contig14311:2435..25231691682966.6474545-CDS-L-elsbetiae_contig14311:2435..2523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14311 2436..2523 -
1622815571.7936578-CDS-L-elsbetiae_contig14311:4203..43461622815571.7936578-CDS-L-elsbetiae_contig14311:4203..4346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14311 4204..4346 -
1691682966.6603694-CDS-L-elsbetiae_contig14311:4203..43461691682966.6603694-CDS-L-elsbetiae_contig14311:4203..4346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14311 4204..4346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14311.3193.1

>prot_L-elsbetiae_contig14311.3193.1 ID=prot_L-elsbetiae_contig14311.3193.1|Name=mRNA_L-elsbetiae_contig14311.3193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
FRFILNYLRDNYIGLESFGKEDLHFLEELSHEAQFFNIAGLCSDVSRRMS
DIARQHREGPSGDKDFRLVQCSKGQIQELFHEWVIEKNYEFECMQIVEDT
AYIVLGRRVSRGELALVERLMKT*
back to top

mRNA from alignment at L-elsbetiae_contig14311:1716..4346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14311.3193.1 ID=mRNA_L-elsbetiae_contig14311.3193.1|Name=mRNA_L-elsbetiae_contig14311.3193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2631bp|location=Sequence derived from alignment at L-elsbetiae_contig14311:1716..4346- (Laminarionema elsbetiae ELsaHSoW15)
TTTAGGTTCATCTTGAACTATCTGAGAGATAACTATATCGGGCTGGAATC
GTTCGGGAAGGAGGACTTGCACTTTCTGGAGGAGCTGTCGCACGAGGCCC
AGTTCTTCAACATCGCCGGGCTGTGCTCGGACGTATCTCGCCGGTGAGTA
ATACGCGCGTCTTTTTTTTTTTTCTCTGCCTGCCCTGTTTATGTACATAT
GCGTATCGAGGTTAATTGTTGTTACGTTGTGTTCGATGTGTACTATGCCG
TTGTTGTTGTTTACTCGGCTGGATTCGCGCCCATGTCGATTGAACTCGGT
TATCTAGTTTGGGTCCCATTCTTGTTTTACAAAGCTGTCTTTGATTAGGT
ACATATAGCAAACAATGTTGTTGCGTCGGGGGCCAGAAGACGGAATATGT
CGAGTTTTCCCCGTGCAGCGAACGCTGTAGTGCACCGTTTTTTGGCTTGT
GAAGGAAGGCACGCTCCGGTAGCGTAGGAATAGCTCTATCGATGGCGCTG
AAAAAAGTAAGGGGAGTGCGAGTGTGTGGGGCGCGAGAGGCAAAAGCACA
CATTCTAGGGATATTTACCTGCACAGAATATCAGGCGTTTCTCGCAGGCG
GAAAAATCCCGCCAACTTCCCCGGGTACGCGGCCGGCAGATCAGACACAC
GCTGCCGCCCCACCTATGTAGCCAACTTGAGCCACCAAACCCGACAGAAA
CCCACATACTAACTAACTGTGGTGGTGCTGGGTTTACCCTCCTTGCTGCG
TGGGTGCATGGTCTGTGCTGGGTGCGAGGTTAAAAATACAGACAACCCCC
CCGCCCTCAAGGGCTGAACAACTACCGTGTTTTGGCGAGCGTGGTGTACC
GTAAGGGACACAAGATACCACACCCCCTGGACAGGTTTTCAAAGCTCGAT
TCCTCCCCAGCAAGAAGAGCGCCAGTGCCGAAAGGGGTGGCGTCGGAAAG
ATCTAGTCGAGGGCTGTCCGAAAATGTGCCGTTTGGTGCTGGCACCCTCT
TCGTTACGGAGTAATGGATCTCTCAAATTCGATCCAGGGGATGTGGTATC
TTGTTTCACCTACGTACGGTAATTTGCAAGCGAGAGTCTGTGACAAAAAA
CAGGTGCCGGAGACAACCACCTAGGTCACCATCTTTCCGCGGCACCCATC
CGTTGTTGGGTTCAATCTCGGTAGCGCAAGAAATCGGTCAATGCTCGTAC
ACAATTCCCAAGAGGAAAACAGGTTTTCTCCAGCTCCAGGAAGGGGGGTG
TTTTTCCTCTGTGGGGGTGTTACCTTGTGTGGTATACGGCCACGCATTCT
CCGATACGCAACTTCGCGCGGGCTGATTTTAACTGACAAGTCTCGCCACC
AGGCAAGGGGCTTTTCCTCTTGCGCCACACTCCTAACAACTAGCCTTGAA
TTCTCTACTTCCGTTCAAGCCGCGCAGATCGAAATACCTCCACCGAAGCA
CCCGACTATAGGCTGTTATGGTTGATTTACTCTGTACCGGTTTTCCTATG
GTTTGTGGAGGAGTTCTGCAAACCGTGCCACATCTGCCGACCCCCCGAAG
AAGGTAAAGTATCTGCCGGCCTGCCGGCCCCCCGAGCGTGACAGCACTGC
GTATTTTTTTTAGCCCGCGACCACCGGATCGACCGCACCGGGCTTTGGAG
GAGTACGGACGGATGGAGGTACAATAATACCGAGCAGAGGGATCGAGACG
GGTTTTAATTTAATTTCATAGCGACAGCAGCAGCAACAACAACAACACCC
ACCAACAACGACAACAGCAGCAGGAGCAGTAACAACAACAACAACAGCAT
CTTTGTGTTGTTGCTTGTCTCAGGATGTCGGACATTGCGCGGCAGCACCG
GGAGGGTCCATCGGGGGACAAGGATTTCAGGCTTGTGCAGTGCTCCAAGG
GCCAAATACAGGTACTACTTCGAAGTAGTAACTAGATTTGGAGGGATTAA
CTTTTTTGTTTTATGTATTTTTCTCGAGGTACATTAATACATGTGTAACT
ATGTGTGTTTGATGTTGATTTTTGTAAGCTTGTTCTTCATAGCTTGATCT
TCCTTTGTAACATGCAGTTGTACCAGTTTTTTCGGTTCAGCGCTCGTGTT
TCGTCGAAGGAACGTCGCAAAACGGCGCATGCCTCTTGTACTCTCGTGTC
GATTGCTCTCATGTAAGTATGCTGTTTGGGTTGGAAAGCGCCCCGCTCAC
GTCGTCCAAGTCTGCTGTCAGACCACCACGTCCTCGAGAGCACCACCGCG
TTTGACACCGGTATCAGTGGGCGAAATCACGCAGCTTGACGTCACGGACC
CCCCCCCCCCGCCCCTGATCACATTTTCAAGACGTCTGTCTCGTGATACT
ACTACGTATGAAGATGCCTGACTTGCGGCGCATAAGCTATGGACTTTTTT
TCAGTCGTGCCCCCTTCCTTCGGGGTTGTTCGACAGCAACACAGCAGTAA
TGACTCTTATTTATTCTTCTCTTTTTTGCTCTTGGATAAGGAACTGTTCC
ACGAGTGGGTGATCGAGAAGAACTACGAGTTCGAGTGCATGCAGATCGTG
GAAGACACCGCGTACATCGTGCTCGGCCGCCGGGTCAGCCGAGGGGAGCT
CGCTCTGGTGGAGCGCCTGATGAAGACATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14311:1716..4346-

>mRNA_L-elsbetiae_contig14311.3193.1 ID=mRNA_L-elsbetiae_contig14311.3193.1|Name=mRNA_L-elsbetiae_contig14311.3193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig14311:1716..4346- (Laminarionema elsbetiae ELsaHSoW15)
TTTAGGTTCATCTTGAACTATCTGAGAGATAACTATATCGGGCTGGAATC
GTTCGGGAAGGAGGACTTGCACTTTCTGGAGGAGCTGTCGCACGAGGCCC
AGTTCTTCAACATCGCCGGGCTGTGCTCGGACGTATCTCGCCGTTTAGGT
TCATCTTGAACTATCTGAGAGATAACTATATCGGGCTGGAATCGTTCGGG
AAGGAGGACTTGCACTTTCTGGAGGAGCTGTCGCACGAGGCCCAGTTCTT
CAACATCGCCGGGCTGTGCTCGGACGTATCTCGCCGGATGTCGGACATTG
CGCGGCAGCACCGGGAGGGTCCATCGGGGGACAAGGATTTCAGGCTTGTG
CAGTGCTCCAAGGGCCAAATACAGGATGTCGGACATTGCGCGGCAGCACC
GGGAGGGTCCATCGGGGGACAAGGATTTCAGGCTTGTGCAGTGCTCCAAG
GGCCAAATACAGGAACTGTTCCACGAGTGGGTGATCGAGAAGAACTACGA
GTTCGAGTGCATGCAGATCGTGGAAGACACCGCGTACATCGTGCTCGGCC
GCCGGGTCAGCCGAGGGGAGCTCGCTCTGGTGGAGCGCCTGATGAAGACA
TGAGAACTGTTCCACGAGTGGGTGATCGAGAAGAACTACGAGTTCGAGTG
CATGCAGATCGTGGAAGACACCGCGTACATCGTGCTCGGCCGCCGGGTCA
GCCGAGGGGAGCTCGCTCTGGTGGAGCGCCTGATGAAGACATGA
back to top