mRNA_L-elsbetiae_contig14310.3192.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14310.3192.1
Unique NamemRNA_L-elsbetiae_contig14310.3192.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14310.3192.1 vs. uniprot
Match: D7FT18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT18_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 2.880e-70
Identity = 112/140 (80.00%), Postives = 125/140 (89.29%), Query Frame = 1 
Query:    1 NSGTMEVQFLRESLVKAETAALDKKGELVLGRRTSRRQKRGMAQTYVVTWRDAETQKETTLPIAQYGLGRKAPRAKVARIMQYVKRQVDDLDVREGRWLTGIGVVCFVFGGLLLILRVAIGAIIPQPPSRKDLSRRQLFK 420
            N   +E QFLRESLVKAE A LDKKGELV G+R SRRQKRGMAQTY VTW+DAETQ ETTLPIA YGLGRK PRAKVARIMQYV+RQ+DDLDV+EGRW TGIG+VCFVFGG+L++LRV +G+I PQPPSR+DLSRRQLFK
Sbjct:   31 NRSRIEFQFLRESLVKAEVAHLDKKGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSIFPQPPSRRDLSRRQLFK 170
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BLAST of mRNA_L-elsbetiae_contig14310.3192.1 vs. uniprot
Match: A0A6H5L4Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y3_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 1.580e-68
Identity = 111/140 (79.29%), Postives = 123/140 (87.86%), Query Frame = 1 
Query:    1 NSGTMEVQFLRESLVKAETAALDKKGELVLGRRTSRRQKRGMAQTYVVTWRDAETQKETTLPIAQYGLGRKAPRAKVARIMQYVKRQVDDLDVREGRWLTGIGVVCFVFGGLLLILRVAIGAIIPQPPSRKDLSRRQLFK 420
            N    E QFLRESLVKAE A LDK GELV G+R SRRQKRGMAQTY VTW+DAETQ ETTLPIA YGLGRK PRAKVARIMQYV+RQ+DDLDV+EGRW TGIG+VCFVFGG+L++LRV +G+I PQPPSR+DLSRRQLFK
Sbjct:   79 NRSRKEFQFLRESLVKAEVAHLDKNGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSIFPQPPSRRDLSRRQLFK 218
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BLAST of mRNA_L-elsbetiae_contig14310.3192.1 vs. uniprot
Match: A0A835YLB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.050e-16
Identity = 46/116 (39.66%), Postives = 77/116 (66.38%), Query Frame = 1 
Query:   16 EVQFLRESLVKAETAALDKKGELVLGRRTSRRQKRGMAQTYVVTWRDAETQKETTLPIAQYGLGRKAPRAKVARIMQYVKRQVDDLDVREGRWLTGIGVVCFVFGGLLLILRVAIG 363
            E  F R +L+ AE   L + GE+V     SR+++R  A +Y + W DA+ Q     P++  GLGR+ PR++V  IM+Y+KR++ ++DV + R+ +G+G++C +FG LLL++R A+G
Sbjct:   61 ETAFPRVNLMSAELVRLYQ-GEIVDPTSLSRQKRRTTASSYAIKWLDAQRQTHMR-PMSSRGLGRQVPRSRVQEIMKYIKREIHEVDVSQARYTSGVGLICCIFGVLLLLMRAAVG 174
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14310.3192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FT18_ECTSI2.880e-7080.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Y3_9PHAE1.580e-6879.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLB3_9STRA1.050e-1639.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14310contigL-elsbetiae_contig14310:2067..3876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_002430.1
Exons2
Model size1189
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14310.3192.1prot_L-elsbetiae_contig14310.3192.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14310 2833..3864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.7084284-UTR-L-elsbetiae_contig14310:2066..28321622815571.7084284-UTR-L-elsbetiae_contig14310:2066..2832Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14310 2067..2832 -
1691682966.5895064-UTR-L-elsbetiae_contig14310:2066..28321691682966.5895064-UTR-L-elsbetiae_contig14310:2066..2832Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14310 2067..2832 -
1622815571.7400339-UTR-L-elsbetiae_contig14310:3864..38761622815571.7400339-UTR-L-elsbetiae_contig14310:3864..3876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14310 3865..3876 -
1691682966.621798-UTR-L-elsbetiae_contig14310:3864..38761691682966.621798-UTR-L-elsbetiae_contig14310:3864..3876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14310 3865..3876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.7198832-CDS-L-elsbetiae_contig14310:2832..30421622815571.7198832-CDS-L-elsbetiae_contig14310:2832..3042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14310 2833..3042 -
1691682966.6020424-CDS-L-elsbetiae_contig14310:2832..30421691682966.6020424-CDS-L-elsbetiae_contig14310:2832..3042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14310 2833..3042 -
1622815571.730272-CDS-L-elsbetiae_contig14310:3663..38641622815571.730272-CDS-L-elsbetiae_contig14310:3663..3864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14310 3664..3864 -
1691682966.6114316-CDS-L-elsbetiae_contig14310:3663..38641691682966.6114316-CDS-L-elsbetiae_contig14310:3663..3864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14310 3664..3864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14310.3192.1

>prot_L-elsbetiae_contig14310.3192.1 ID=prot_L-elsbetiae_contig14310.3192.1|Name=mRNA_L-elsbetiae_contig14310.3192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MEVQFLRESLVKAETAALDKKGELVLGRRTSRRQKRGMAQTYVVTWRDAE
TQKETTLPIAQYGLGRKAPRAKVARIMQYVKRQVDDLDVREGRWLTGIGV
VCFVFGGLLLILRVAIGAIIPQPPSRKDLSRRQLFK*
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mRNA from alignment at L-elsbetiae_contig14310:2067..3876-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14310.3192.1 ID=mRNA_L-elsbetiae_contig14310.3192.1|Name=mRNA_L-elsbetiae_contig14310.3192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1810bp|location=Sequence derived from alignment at L-elsbetiae_contig14310:2067..3876- (Laminarionema elsbetiae ELsaHSoW15)
AACAGCGGCACCATGGAGGTCCAGTTCCTCCGAGAGAGCTTGGTCAAGGC
CGAGACGGCGGCATTGGATAAGAAGGGCGAACTCGTGCTGGGGAGGCGCA
CAAGTCGGCGGCAGAAGAGAGGAATGGCTCAGACGTACGTTGTTACGTGG
AGGGACGCGGAAACCCAGAAGGAAACCACACTCCCTATCGCTCAATACGG
CCTGGGTCGAAAGGTGCCCGAAGAGTTTTTTTTTTTTTTTTCATCGCCAA
TCATTTTCAGCGCTCGAGGGGCTCCGTGCCACGACGGGGCATCTTGCCAG
AGCTCTGAGCCGTGGTCGCACAGAAGGGTTGACTTGTGTACCTGTATGTA
GCGGCGAACGGCCACAGAAGTAGGGGACTCGTCTTGCCCATGTGCTTGCT
TGCATTGCGGTCGCAGAAGTACAGGATGTGCGCATGTGGCGTGTGTAGGG
CAGGGTGGCAAGATTGTACATAAGCCGGGGTGAGCAAAACATGCAGGCCT
TCCACCTGCGGGCCTCTTTCTCCCTGGCCCCGGGAGACAAAGCTTTTTTT
TTGCTGGACGAACGTCTCGGAATTGATTCCGTGTGAGGCATCAGAAAAAA
ACGGCTGGAGTCAGGTGCAGATGGGCCAGCCCAGCCCAGCCCAGCCCAGC
CCGGCCCGGCCCGGCCCCGTCCCGTACGTACCCCCACGGGCCTGCAGATG
AAGCACTGTCAACTGGGCTGATTGCTGGCATTTATTGCAAGCGAGTGGCT
CGACCGATGACCTTCCCCCCCGCCCCCTCCCCGCGCCTAAGTTTAATTTG
ACTCAATGATCTCTTTTTTCCGCGGTTGTCACAGGCACCTCGCGCGAAGG
TGGCGCGAATCATGCAGTACGTGAAGCGGCAGGTCGATGACCTGGACGTG
AGGGAGGGGCGGTGGCTCACGGGGATAGGCGTAGTTTGTTTCGTCTTCGG
CGGCCTGTTGCTCATCCTCAGGGTGGCTATCGGGGCGATCATCCCTCAAC
CCCCGTCGAGGAAGGACCTTTCGCGAAGACAACTGTTCAAGTAGATTGTT
AGGGCTGATGTGGAGAGAGGAGAGGGTAGGGGAGTTGGCACAACACGTGT
GTTGTGTTTCCACTATATGCGGTACACATACCCCAAATGTGACGACACAC
GGGGGGGGCGGGGGAGCATTTCGCGTACGTAATGTAGCCCTAATCGTCGA
CATATTCTTCGATTAATTATTCGTCGGAAGGGCATCGCTTTAGTGGAGAG
GCATCCCGAGGATATTGGTGGTTCGGGGAGGACGAGTTTGGTGGTTGTGG
GCGAGCGGTGCGGAACGCTTTGGATCGATTAAGAGTTTTTCGTGTCGTTT
CATTAGTTTGATTCAAGTTGTGTTTTGAAGCGGCAGATGGGTGCGTCCTA
CACGGGGGACTCGCTCAGCAGATGGGTGAGCCCACCTGATTAGCGTATAC
CTGATGATTTGCCCTGGATTCAGCAGCCTGTCATCTTCCGTTTCAGTTCG
TGACCGTGCGTGTCGTGCAAGGTCTGTTGCGCCCTCTTCCCATTTTTTTA
CTCCAAAGAGCGCGCCCAGCGCAACGGTTGATTACATACATACATATGTA
GCTTGCTTGCGGGTTGTGACCAGAGAAATTGCGAGCATCTGGATTGTTTG
CGCATTATCACGATATTTTGTGTATTTCTAGCCAGGAGGAGGAGGAGAGC
GGTGCTGTACGGTCGATGTTTTTTTTCTATTGCGTGCTGTTTTTTTACCC
GTGTATTATGTGCTTTAGCGTATCCCAGGGCCAAGTGTTCCCGGCGGCAA
TGAGTCTTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14310:2067..3876-

>mRNA_L-elsbetiae_contig14310.3192.1 ID=mRNA_L-elsbetiae_contig14310.3192.1|Name=mRNA_L-elsbetiae_contig14310.3192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig14310:2067..3876- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGTCCAGTTCCTCCGAGAGAGCTTGGTCAAGGCCGAGACGGCGGC
ATTGGATAAGAAGGGCGAACTCGTGCTGGGGAGGCGCACAAGTCGGCGGC
AGAAGAGAGGAATGGCTCAGACGTACGTTGTTACGTGGAGGGACGCGGAA
ACCCAGAAGGAAACCACACTCCCTATCGCTCAATACGGCCTGGGTCGAAA
GATGGAGGTCCAGTTCCTCCGAGAGAGCTTGGTCAAGGCCGAGACGGCGG
CATTGGATAAGAAGGGCGAACTCGTGCTGGGGAGGCGCACAAGTCGGCGG
CAGAAGAGAGGAATGGCTCAGACGTACGTTGTTACGTGGAGGGACGCGGA
AACCCAGAAGGAAACCACACTCCCTATCGCTCAATACGGCCTGGGTCGAA
AGGCACCTCGCGCGAAGGTGGCGCGAATCATGCAGTACGTGAAGCGGCAG
GTCGATGACCTGGACGTGAGGGAGGGGCGGTGGCTCACGGGGATAGGCGT
AGTTTGTTTCGTCTTCGGCGGCCTGTTGCTCATCCTCAGGGTGGCTATCG
GGGCGATCATCCCTCAACCCCCGTCGAGGAAGGACCTTTCGCGAAGACAA
CTGTTCAAGTAGGCACCTCGCGCGAAGGTGGCGCGAATCATGCAGTACGT
GAAGCGGCAGGTCGATGACCTGGACGTGAGGGAGGGGCGGTGGCTCACGG
GGATAGGCGTAGTTTGTTTCGTCTTCGGCGGCCTGTTGCTCATCCTCAGG
GTGGCTATCGGGGCGATCATCCCTCAACCCCCGTCGAGGAAGGACCTTTC
GCGAAGACAACTGTTCAAGTAG
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