mRNA_L-elsbetiae_contig1429.3182.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1429.3182.1
Unique NamemRNA_L-elsbetiae_contig1429.3182.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1429.3182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1429contigL-elsbetiae_contig1429:24097..26186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size278
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1429.3182.1prot_L-elsbetiae_contig1429.3182.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1429 24099..26186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.7910504-CDS-L-elsbetiae_contig1429:24098..241801622815570.7910504-CDS-L-elsbetiae_contig1429:24098..24180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1429 24099..24180 -
1691682966.045588-CDS-L-elsbetiae_contig1429:24098..241801691682966.045588-CDS-L-elsbetiae_contig1429:24098..24180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1429 24099..24180 -
1622815570.8026562-CDS-L-elsbetiae_contig1429:25383..255041622815570.8026562-CDS-L-elsbetiae_contig1429:25383..25504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1429 25384..25504 -
1691682966.059229-CDS-L-elsbetiae_contig1429:25383..255041691682966.059229-CDS-L-elsbetiae_contig1429:25383..25504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1429 25384..25504 -
1622815570.818852-CDS-L-elsbetiae_contig1429:26113..261861622815570.818852-CDS-L-elsbetiae_contig1429:26113..26186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1429 26114..26186 -
1691682966.0681145-CDS-L-elsbetiae_contig1429:26113..261861691682966.0681145-CDS-L-elsbetiae_contig1429:26113..26186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1429 26114..26186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1429.3182.1

>prot_L-elsbetiae_contig1429.3182.1 ID=prot_L-elsbetiae_contig1429.3182.1|Name=mRNA_L-elsbetiae_contig1429.3182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
QDFTIGKKRWVKIYEHQKKRKSNIEAEHARMMADALTEEDQQRVAQTIRE
EEANASILSGTKSQRIGATREAADEGRDGAGLLPGIAVRAGP
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mRNA from alignment at L-elsbetiae_contig1429:24097..26186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1429.3182.1 ID=mRNA_L-elsbetiae_contig1429.3182.1|Name=mRNA_L-elsbetiae_contig1429.3182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2090bp|location=Sequence derived from alignment at L-elsbetiae_contig1429:24097..26186- (Laminarionema elsbetiae ELsaHSoW15)
CAGGATTTCACCATCGGGAAAAAGCGATGGGTAAAGATATACGAACATCA
GAAGAAGAGAAAGTCAAATATCGGTGAGAGAGAGGGGGGGGGTATAGAGG
GAGAGATAGATACAGAGAGAGGGAGAGGGAGAGAAAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAGGAAGAAGGAGAGA
GAGAGAGAGAAAAAGAGGTACTCCTAAAGATATCCTTCGTGAAGAGAGAG
AGGGAGAGAGAGGGAGAGAGAGGGAGAGAGGATAGGAAAGATAGACTACC
GTTCGGAGAAATAGTCGTCCAGGCAATTGGAATGCACCCACCACGGCATG
AGGATGCAGCCATTCCCCGCGCTACGCGATTGTTGTGAACGATGATAAGG
GACTCGACCACAAGTGGCGTTAACTGTTGCGAATATCAGACACCCATACC
TCACAGCCATGAACAAGAATACATGCAGCCGCATTGACCTTTGGCAGGTG
TATACGTAGGATCCAAGCACCCACCAAACGGTGCCAGCATTGAAAACGAG
GGTGCTTTCCTGCCCTCGTCTGCACCTGACTTTTTCACACACTGCTCGAA
AACGGTTGTAAAATGTGTTTGCGCCGACAACAACAACAACAACAACAACA
ATAACAACTGCGCTGTTGTTGATCCTACACAGAGGCGGAGCATGCGCGCA
TGATGGCAGACGCGTTGACGGAGGAGGACCAGCAGCGGGTGGCGCAGACC
ATCCGAGAAGAGGAAGCCAATGCCAGCATCCTAAGCGGCACGAAGAGCCA
GAGGTATGCTTCGTCGCGGTGGTTCAAGTTGCGGTTGGGTCGTCTAGCTA
GTCGTAGTGGAGGAAGGGGGCCAGTGGGGCAGACGACGAATAAGCCAATA
ATGGGAGAAGAAAAAAAAAACGTTGCATTTTGTGTTTTCTTTGGAAAAAA
ATCGGGTTGTCTGCTTTTGTTCTTTATCCTAAAAATCGATTTGTCTTATT
TTTCGCCATCTGCGCTGGATCGCTGGATCCAACACGGCGTATCGTAGCGT
TGTCCGCAAACGCCCTTCAAAGCACCAGAGGCCAGAGGCAGCCTTTATGC
CGCCCGCGATGATTCAGGTTGCGCACGTTCTGTCAAATCCGGAAGGGTGG
GTGTGCTCGTTCGCGTTTTTCGCCGTCTGGGCTTTATCGAACACGGCGTG
AGCGTTGCTCGTGAGGCACGGTTGTCGGCGGCGGAAGTACACCTCGCGCT
GGATGCGTGCCGACCGAGCACGGCGAAAGGGGAAGACCGACCAATGTTGC
GGAGTCCTCGTTAAAGGCCTACAATACCGTACATATATGGTCACGCGAGT
CGTCGCACAGGGGTGATGCAGTCGGTTTTTGAGTGTTTCCTTGCCTGGAT
TATGATCGCATATCTAGGGATGCGGCGACTGGGTGCAGTGACCGCGATGA
ATTTCGATGTGTGGGATTCTTCGCGTGATTACGGTAAGAAAACACAACCG
TGTGATCACATTTTCTTAGTCTCAGAGATTTATATCACACGGTGTGCTGC
TGTGAAAACGGTGTGTTAACTTAAACTTCGAAGACTATGTATGTTATCTT
GTCATAAGCGTACTACGAGAACTCCCAACTTCCAACCCTGACCAGAAACC
CTACCCACGCCCCCCCCGCCACGGTGTAGAGACCGGGCCCCCCTAAGATT
GCGACGCTTTCGCGCTGGACGGACGTGTGCGCACCTCATCCCAAAACTAC
CACCGTGCACTACCGCCGACGGCAACCGTTGCGATGCTGTCACGCTGGAC
ATATATGCACCTGACCCCAATAACACTGTTTGCCACCGTGCACTACCGCC
AACGGTGTAACCGTTGCGATGCTTTCACGCTGGACGTATGTGCACCTCAT
CCCATTAACACTGTTTGCCACCGTGCACTACCGCCAACGGTAACCACTGT
TTCTGCTCCCGTACAACGCGTGACCGTATATATGTTTTTCAATGATTCAT
CGTCAGGATCGGAGCTACGAGGGAAGCTGCCGATGAGGGCAGGGATGGCG
CTGGCCTCCTTCCGGGGATCGCTGTTCGGGCTGGGCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1429:24097..26186-

>mRNA_L-elsbetiae_contig1429.3182.1 ID=mRNA_L-elsbetiae_contig1429.3182.1|Name=mRNA_L-elsbetiae_contig1429.3182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig1429:24097..26186- (Laminarionema elsbetiae ELsaHSoW15)
CAGGATTTCACCATCGGGAAAAAGCGATGGGTAAAGATATACGAACATCA
GAAGAAGAGAAAGTCAAATATCGCAGGATTTCACCATCGGGAAAAAGCGA
TGGGTAAAGATATACGAACATCAGAAGAAGAGAAAGTCAAATATCGAGGC
GGAGCATGCGCGCATGATGGCAGACGCGTTGACGGAGGAGGACCAGCAGC
GGGTGGCGCAGACCATCCGAGAAGAGGAAGCCAATGCCAGCATCCTAAGC
GGCACGAAGAGCCAGAGAGGCGGAGCATGCGCGCATGATGGCAGACGCGT
TGACGGAGGAGGACCAGCAGCGGGTGGCGCAGACCATCCGAGAAGAGGAA
GCCAATGCCAGCATCCTAAGCGGCACGAAGAGCCAGAGGATCGGAGCTAC
GAGGGAAGCTGCCGATGAGGGCAGGGATGGCGCTGGCCTCCTTCCGGGGA
TCGCTGTTCGGGCTGGGCCGGATCGGAGCTACGAGGGAAGCTGCCGATGA
GGGCAGGGATGGCGCTGGCCTCCTTCCGGGGATCGCTGTTCGGGCTGGGC
CG
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