mRNA_L-elsbetiae_contig1427.3165.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1427.3165.1
Unique NamemRNA_L-elsbetiae_contig1427.3165.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5KTR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTR5_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 5.180e-32
Identity = 74/161 (45.96%), Postives = 98/161 (60.87%), Query Frame = 1
Query:   52 AAMETCSACRRADDGTGLRKPRPRRAEQFLQFGGESGVSVMFPNRLMGVGDPLM--LCKRTGCMLKLFEQRE---NRERKSHAAG--PRKRRSSTQVPEPVGHLQRRPYDRYCTSPAAVDALIAEVSIEGLVLDMCGG*TDAVALRLGETCTVVTNDVRTR 513
            ++   CSAC   + G   R+ R R  E    F  E+G++  FP    G   P +  LCKR+GC+L+L+++ E   +RER +  A   PR  R+ +  PEPV H +RR +DRYCTSP AVDAL   V+I G VLDMCGG  DAVA+  G TC V+TNDV +R
Sbjct:   27 SSSRRCSAC--LECGEDFRQTRARTGELLRSFVDEAGLADRFPGFQSGAAGPNLFALCKRSGCLLELYKKHEWARSRERVARKAKQTPRHSRTWSAAPEPVTHHKRRRFDRYCTSPEAVDALRDAVAITGCVLDMCGGPDDAVAMGFGGTCEVLTNDVSSR 185          
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5L2F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2F6_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 5.610e-29
Identity = 79/176 (44.89%), Postives = 98/176 (55.68%), Query Frame = 1
Query:  115 RPRRAEQFLQFGGESGVSVMFPNRLMGVGDP----LMLCKRTGCMLKLFEQRENRERKSHAAGPRKRRSS-TQVPEPVGHLQRRPYDRYCTSPAAVDALIAEVSIEGLVLDMCGG*TDAVALRLGETCTVVTNDVRTR*EEFGCKVDSSYVNTTPL*VVLCGASVNPFSTGSQFGE 627
            R R       F   +G+   FP   +  GDP    L+LCKR GC+L+LF   + RE ++      KR    T  PEPV  L+RR +DRYCTSPAA++AL+  VSI G VLDMCGG  DAVA+RL +TC V+TNDVR R            V TTPL + L        ST S+ GE
Sbjct:    2 RERTGGNVRAFLEAAGMGDKFPG--LKCGDPSIGKLVLCKRAGCLLELFVLNQQRESRAPTERRAKRGPKWTCAPEPVKQLKRRCFDRYCTSPAALEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVRPR---RMINAVCLLVWTTPLYMCL--------STSSRLGE 164          
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5KD02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD02_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.310e-27
Identity = 69/142 (48.59%), Postives = 89/142 (62.68%), Query Frame = 1
Query:  115 RPRRAEQFLQFGGESGVSVMFPNRLMGVGDP----LMLCKRTGCMLKLFEQRENRERKSHAAGPRKRRSS-----TQVPEPVGHLQRRPYDRYCTSPAAVDALIAEVSIEGLVLDMCGG*TDAVALRLGETCTVVTNDVRTR 513
            R R       F   +GV+  FP   +  GDP    L+LCKR GC+L+LF    N++++S A  P KRR+      T  PEPV  L+RR +DRYCTSPAA++AL+ +VSI G VLD CGG  DA+  RL +TC V+TNDVR R
Sbjct:    2 RERTGGNVRSFVEAAGVADKFP--ALKCGDPDVDKLVLCKRGGCLLELFVL--NKQKESRA--PSKRRAKRGPKWTCAPEPVKQLKRRCFDRYCTSPAALEALLGDVSISGCVLDTCGGAGDAIVTRLRDTCQVLTNDVRPR 137          
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 5.490e-25
Identity = 62/109 (56.88%), Postives = 75/109 (68.81%), Query Frame = 1
Query:  202 DPLMLCKRTGCMLKLFEQRENRERKSHAAGPRKRRSS-----TQVPEPVGHLQRRPYDRYCTSPAAVDALIAEVSIEGLVLDMCGG*TDAVALRLGETCTVVTNDVRTR 513
            D L+LCKR GC+L+LF    N++R S A  P KRR+      T  PEPV  L+RR  DRYCTSPA ++AL+  VSI G VLDMCGG  DAVA+RL +TC V+TNDV  R
Sbjct:   16 DKLVLCKRAGCLLELFVL--NQQRDSRA--PTKRRAKRGPKWTCAPEPVKQLKRRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPR 120          
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5JSC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC3_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.730e-18
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  313 TQVPEPVGHLQRRPYDRYCTSPAAVDALIAEVSIEGLVLDMCGG*TDAVALRLGETCTVVTNDV 504
            T  PEPV  L+RR +DRYCTSP A++AL+  VSI G VLDMCGG  DAV  RL +TC V+TNDV
Sbjct:   11 TCAPEPVKQLKRRCFDRYCTSPTALEALLGVVSISGCVLDMCGGPGDAVVTRLRDTCQVLTNDV 74          
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5KES8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES8_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.110e-13
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  115 RPRRAEQFLQFGGESGVSVMFPNRLMGVGDPLM--LCKRTGCMLKLFEQRE---NRERKSHAAG--PRKRRSSTQVPEPVGHLQRRPYDRYCTSPAAVDAL 396
            R R  E    F  E+G++  FP    G   P +  LCKR+GC+L+L+++ E   +RER +  A   PR  R+ +  PEPV H +RR +DRYCTSP AVDAL
Sbjct:   23 RARTGELLRSFVDEAGLADRFPGFQSGAAGPNLFALCKRSGCLLELYKKHEWARSRERVARKAKQTPRHSRTWSAAPEPVTHHKRRRFDRYCTSPEAVDAL 123          
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 4.000e-10
Identity = 34/52 (65.38%), Postives = 36/52 (69.23%), Query Frame = 1
Query:  331 VGHLQRRPYDRYCTSPAAVDALIAEVSIEGLVLDMCGG*TDAVALRLGETCT 486
            +    RR  DRYCTSPAAVDAL A V+I G VLDMCGG  DAVA   G TCT
Sbjct:   37 LSRTTRRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTCT 88          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KTR5_9PHAE5.180e-3245.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2F6_9PHAE5.610e-2944.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD02_9PHAE1.310e-2748.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K049_9PHAE5.490e-2556.88Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSC3_9PHAE5.730e-1864.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KES8_9PHAE1.110e-1344.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L1N5_9PHAE4.000e-1065.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1427contigL-elsbetiae_contig1427:10013..10662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size650
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1427.3165.1prot_L-elsbetiae_contig1427.3165.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1427 10070..10459 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.81893-UTR-L-elsbetiae_contig1427:10012..100691622815569.81893-UTR-L-elsbetiae_contig1427:10012..10069Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1427 10013..10069 +
1691682965.517932-UTR-L-elsbetiae_contig1427:10012..100691691682965.517932-UTR-L-elsbetiae_contig1427:10012..10069Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1427 10013..10069 +
1622815569.8496606-UTR-L-elsbetiae_contig1427:10459..106621622815569.8496606-UTR-L-elsbetiae_contig1427:10459..10662Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1427 10460..10662 +
1691682965.5348659-UTR-L-elsbetiae_contig1427:10459..106621691682965.5348659-UTR-L-elsbetiae_contig1427:10459..10662Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1427 10460..10662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.833055-CDS-L-elsbetiae_contig1427:10069..104591622815569.833055-CDS-L-elsbetiae_contig1427:10069..10459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1427 10070..10459 +
1691682965.5266325-CDS-L-elsbetiae_contig1427:10069..104591691682965.5266325-CDS-L-elsbetiae_contig1427:10069..10459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1427 10070..10459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1427.3165.1

>prot_L-elsbetiae_contig1427.3165.1 ID=prot_L-elsbetiae_contig1427.3165.1|Name=mRNA_L-elsbetiae_contig1427.3165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
METCSACRRADDGTGLRKPRPRRAEQFLQFGGESGVSVMFPNRLMGVGDP
LMLCKRTGCMLKLFEQRENRERKSHAAGPRKRRSSTQVPEPVGHLQRRPY
DRYCTSPAAVDALIAEVSIEGLVLDMCGG*
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mRNA from alignment at L-elsbetiae_contig1427:10013..10662+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1427.3165.1 ID=mRNA_L-elsbetiae_contig1427.3165.1|Name=mRNA_L-elsbetiae_contig1427.3165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=650bp|location=Sequence derived from alignment at L-elsbetiae_contig1427:10013..10662+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGCGTCACTGCTGTAGATCTAGGGCGTGTACATACTGCTGTACGCCCG CGCAGCAATGGAAACGTGCAGTGCCTGTCGTAGGGCGGATGACGGGACCG GCTTGAGAAAGCCCAGGCCCCGCAGAGCCGAGCAATTCCTCCAATTTGGC GGAGAAAGCGGTGTGTCGGTTATGTTTCCGAACCGGTTGATGGGCGTTGG CGACCCCCTGATGTTGTGCAAACGAACGGGTTGCATGCTCAAGCTTTTTG AGCAGAGGGAGAACAGAGAGAGGAAATCACACGCGGCAGGCCCGCGGAAA CGCAGGAGCTCTACTCAGGTCCCGGAGCCAGTGGGGCACTTACAACGCAG ACCGTACGACCGCTATTGTACGTCGCCCGCGGCGGTGGACGCTTTGATAG CCGAGGTTAGCATTGAAGGGCTTGTGCTGGACATGTGCGGGGGATGAACG GACGCTGTGGCCCTTCGTCTTGGGGAGACCTGCACTGTTGTCACAAATGA CGTGAGGACCAGGTGAGAAGAGTTCGGATGTAAGGTAGACAGTTCGTACG TAAATACAACCCCGTTGTGAGTTGTGCTCTGTGGTGCTTCCGTTAACCCT TTTAGTACTGGAAGCCAGTTTGGAGAATATTTGGTGACTCCTAAAATCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1427:10013..10662+

>mRNA_L-elsbetiae_contig1427.3165.1 ID=mRNA_L-elsbetiae_contig1427.3165.1|Name=mRNA_L-elsbetiae_contig1427.3165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig1427:10013..10662+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAACGTGCAGTGCCTGTCGTAGGGCGGATGACGGGACCGGCTTGAG
AAAGCCCAGGCCCCGCAGAGCCGAGCAATTCCTCCAATTTGGCGGAGAAA
GCGGTGTGTCGGTTATGTTTCCGAACCGGTTGATGGGCGTTGGCGACCCC
CTGATGTTGTGCAAACGAACGGGTTGCATGCTCAAGCTTTTTGAGCAGAG
GGAGAACAGAGAGAGGAAATCACACGCGGCAGGCCCGCGGAAACGCAGGA
GCTCTACTCAGGTCCCGGAGCCAGTGGGGCACTTACAACGCAGACCGTAC
GACCGCTATTGTACGTCGCCCGCGGCGGTGGACGCTTTGATAGCCGAGGT
TAGCATTGAAGGGCTTGTGCTGGACATGTGCGGGGGATGAATGGAAACGT
GCAGTGCCTGTCGTAGGGCGGATGACGGGACCGGCTTGAGAAAGCCCAGG
CCCCGCAGAGCCGAGCAATTCCTCCAATTTGGCGGAGAAAGCGGTGTGTC
GGTTATGTTTCCGAACCGGTTGATGGGCGTTGGCGACCCCCTGATGTTGT
GCAAACGAACGGGTTGCATGCTCAAGCTTTTTGAGCAGAGGGAGAACAGA
GAGAGGAAATCACACGCGGCAGGCCCGCGGAAACGCAGGAGCTCTACTCA
GGTCCCGGAGCCAGTGGGGCACTTACAACGCAGACCGTACGACCGCTATT
GTACGTCGCCCGCGGCGGTGGACGCTTTGATAGCCGAGGTTAGCATTGAA
GGGCTTGTGCTGGACATGTGCGGGGGATGA
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