mRNA_L-elsbetiae_contig14268.3164.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14268.3164.1
Unique NamemRNA_L-elsbetiae_contig14268.3164.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14268.3164.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.290e-22
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    4 DILSHLVGFVPDGQFLFFAPVSRSWRAAWGRRPALTDFLSAETSPSQLRYSFRSGLPREGVDWCALSARLGNLGVLRWARGEGGGGGKGCPWDEQT 291
            D+L  +V FV + QFLFFAPVSR+WR AWG RPA+T +++ ++S SQLRYSF  GLPR+  + CA  ARLGNL +LR ARG G      C W+  T
Sbjct:   62 DLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSG------CAWNGLT 151
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BLAST of mRNA_L-elsbetiae_contig14268.3164.1 vs. uniprot
Match: D7FH77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.940e-15
Identity = 43/96 (44.79%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    4 DILSHLVGFVPDGQFLFFAPVSRSWRAAWGRRPALTDFLSAETSPSQLRYSFRSGLPREGVDWCALSARLGNLGVLRWARGEGGGGGKGCPWDEQT 291
            DIL  L+ FV D  FLFF PV R WRAAWG RP  T   +++ +P+QL+  F  GL R   + CA  ARLG++ +L  AR  G      C W   T
Sbjct:   14 DILGCLISFVADESFLFFGPVCRDWRAAWGNRPTTTRIATSDLTPTQLQRGFDCGLTRTNPELCAAIARLGDVDLLELARDNG------CRWGAST 103
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BLAST of mRNA_L-elsbetiae_contig14268.3164.1 vs. uniprot
Match: D7FH78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH78_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 6.610e-15
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    4 DILSHLVGFVPDGQFLFFAPVSRSWRAAWGRRPALTDFLSAETSPSQLRYSFRSGLPREGVDWCALSARLGNLGVLRWARGEG 252
            +IL  L  FVPD QFLFFAPV++ WRAAW +RP +T  ++ +T+ SQL++SF  GLP+     CA  ARLG L +L  A G G
Sbjct:  114 NILLCLAQFVPDNQFLFFAPVAKGWRAAW-QRPTITAHVTPDTTTSQLQHSFECGLPQNQTGLCAALARLGKLNLLACAVGAG 195
[Close]
BLAST of mRNA_L-elsbetiae_contig14268.3164.1 vs. uniprot
Match: A0A6H5JDL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL5_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.930e-9
Identity = 41/85 (48.24%), Postives = 46/85 (54.12%), Query Frame = 1 
Query:    4 DILSHLVGFVPDGQFLFFAPVSRSWRAAWG--RRPALTDFLSAETSPSQLRYSFRSGLPREGVDWCALSARLGNLGVLRWARGEG 252
            DI+  L  FV D QFLFFAPVSRSWRA  G  RR                   F  GL R GVDWC+ +AR  NL +LRWA  +G
Sbjct:   27 DIVRGLARFVADKQFLFFAPVSRSWRARGGSGRR-------------------FACGLARGGVDWCSTTARAVNLDLLRWATKQG 92
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14268.3164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KPZ6_9PHAE1.290e-2255.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FH77_ECTSI2.940e-1544.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FH78_ECTSI6.610e-1551.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDL5_9PHAE1.930e-948.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14268contigL-elsbetiae_contig14268:2298..3674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog2880.D7FMP0
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-13_000760.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1164
Cds size1164
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.6994677-CDS-L-elsbetiae_contig14268:2297..32821622815569.6994677-CDS-L-elsbetiae_contig14268:2297..3282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14268 2298..3282 +
1691682965.4628272-CDS-L-elsbetiae_contig14268:2297..32821691682965.4628272-CDS-L-elsbetiae_contig14268:2297..3282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14268 2298..3282 +
1622815569.7128572-CDS-L-elsbetiae_contig14268:3495..36741622815569.7128572-CDS-L-elsbetiae_contig14268:3495..3674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14268 3496..3674 +
1691682965.4868734-CDS-L-elsbetiae_contig14268:3495..36741691682965.4868734-CDS-L-elsbetiae_contig14268:3495..3674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14268 3496..3674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14268.3164.1prot_L-elsbetiae_contig14268.3164.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14268 2298..3674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14268.3164.1

>prot_L-elsbetiae_contig14268.3164.1 ID=prot_L-elsbetiae_contig14268.3164.1|Name=mRNA_L-elsbetiae_contig14268.3164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=388bp
ADILSHLVGFVPDGQFLFFAPVSRSWRAAWGRRPALTDFLSAETSPSQLR
YSFRSGLPREGVDWCALSARLGNLGVLRWARGEGGGGGKGCPWDEQTCAL
AAEGGHLELLLWARRGGCPWDEGVCSAAAARGDVGMLQAARRMGCPWTAE
ACASAAGGGHLEALRWCRRGGCPWDEATPRAAAGSGDLSVVKWVKDEGCT
LTAAACASAAREGHLHVLEWLRADADGDGGGCPWGESTCAAAAGGGHLAV
LQWCRLNGCPWDAGTCSAAARAGGLAVLWWCRRNGCPWDERTCAGAAAGG
HFELLEWCRLGGCPWDEDTCVQAASGGHPVSSAAQNGHLAVVKYAGESGC
AWSADACFWASAEGRLDVLGYARGRGCPWDKSQCVAAA
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mRNA from alignment at L-elsbetiae_contig14268:2298..3674+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14268.3164.1 ID=mRNA_L-elsbetiae_contig14268.3164.1|Name=mRNA_L-elsbetiae_contig14268.3164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1377bp|location=Sequence derived from alignment at L-elsbetiae_contig14268:2298..3674+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGACATCCTGTCCCACCTGGTGGGGTTCGTCCCGGACGGGCAGTTCCT
GTTCTTCGCGCCGGTGTCCAGGAGCTGGAGGGCGGCGTGGGGGCGGCGCC
CCGCGCTCACCGACTTCCTCTCGGCGGAGACCTCGCCGTCCCAGCTCCGG
TACAGCTTCCGCTCCGGCCTCCCCCGCGAGGGCGTCGACTGGTGCGCCCT
CTCCGCGCGGCTGGGGAACCTGGGGGTCCTCAGGTGGGCGCGGGGGGAGG
GGGGGGGCGGGGGGAAGGGGTGCCCGTGGGACGAGCAGACGTGCGCGCTG
GCCGCGGAGGGGGGGCACCTCGAGCTGCTCCTCTGGGCGCGGCGCGGGGG
CTGTCCCTGGGATGAGGGGGTCTGCTCGGCGGCGGCGGCCCGGGGCGACG
TGGGGATGCTGCAGGCGGCCCGGCGGATGGGATGTCCCTGGACGGCCGAG
GCCTGCGCCTCCGCCGCGGGCGGGGGGCACCTGGAGGCCCTGCGGTGGTG
CCGGCGGGGGGGGTGCCCCTGGGACGAAGCGACCCCCCGCGCCGCGGCCG
GGAGCGGCGACCTGTCCGTGGTCAAGTGGGTCAAGGACGAGGGGTGCACC
CTGACCGCGGCGGCGTGCGCGTCGGCAGCGCGCGAGGGTCACCTGCACGT
CCTGGAGTGGCTGCGCGCCGATGCCGACGGCGACGGCGGCGGCTGCCCAT
GGGGCGAGAGCACCTGCGCCGCCGCGGCCGGCGGGGGCCACCTGGCCGTC
CTGCAGTGGTGCAGGCTCAACGGCTGCCCCTGGGACGCCGGCACCTGCAG
CGCCGCCGCCAGAGCGGGAGGGCTTGCCGTCTTGTGGTGGTGCAGGCGCA
ACGGCTGCCCCTGGGACGAGCGGACGTGTGCCGGGGCCGCGGCGGGGGGG
CACTTCGAGCTGCTCGAGTGGTGCCGCCTCGGCGGCTGCCCCTGGGACGA
GGACACCTGCGTTCAGGCCGCCTCCGGGGGGCACCGTGATTTGCTCAAGT
TTTGCCTGGGGGGTGGTTGCCCGTGGAGTGCAAAGGCCTCGGTGGGCGCT
GCTGTAGGGGGTCACCTGGAAATCATCGAGTACGCGCACCAGAACGGCTG
TGCTTTGCACCCGGACGTCTGCGCCCTGGCGGCACGGTCCGGGCACTTGG
GGATCGTCCGATTCGCGCACCGGAACGGGTACGTGTTGGACGCGCGAGCG
GTGTCGTCGGCTGCGCAGAACGGACACCTGGCTGTGGTCAAGTACGCCGG
AGAGAGCGGGTGCGCGTGGAGCGCCGACGCGTGCTTCTGGGCGTCCGCGG
AGGGGCGCCTCGACGTCCTCGGGTACGCCAGGGGGCGCGGGTGCCCCTGG
GACAAGAGCCAGTGCGTTGCGGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14268:2298..3674+

>mRNA_L-elsbetiae_contig14268.3164.1 ID=mRNA_L-elsbetiae_contig14268.3164.1|Name=mRNA_L-elsbetiae_contig14268.3164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2328bp|location=Sequence derived from alignment at L-elsbetiae_contig14268:2298..3674+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGACATCCTGTCCCACCTGGTGGGGTTCGTCCCGGACGGGCAGTTCCT
GTTCTTCGCGCCGGTGTCCAGGAGCTGGAGGGCGGCGTGGGGGCGGCGCC
CCGCGCTCACCGACTTCCTCTCGGCGGAGACCTCGCCGTCCCAGCTCCGG
TACAGCTTCCGCTCCGGCCTCCCCCGCGAGGGCGTCGACTGGTGCGCCCT
CTCCGCGCGGCTGGGGAACCTGGGGGTCCTCAGGTGGGCGCGGGGGGAGG
GGGGGGGCGGGGGGAAGGGGTGCCCGTGGGACGAGCAGACGTGCGCGCTG
GCCGCGGAGGGGGGGCACCTCGAGCTGCTCCTCTGGGCGCGGCGCGGGGG
CTGTCCCTGGGATGAGGGGGTCTGCTCGGCGGCGGCGGCCCGGGGCGACG
TGGGGATGCTGCAGGCGGCCCGGCGGATGGGATGTCCCTGGACGGCCGAG
GCCTGCGCCTCCGCCGCGGGCGGGGGGCACCTGGAGGCCCTGCGGTGGTG
CCGGCGGGGGGGGTGCCCCTGGGACGAAGCGACCCCCCGCGCCGCGGCCG
GGAGCGGCGACCTGTCCGTGGTCAAGTGGGTCAAGGACGAGGGGTGCACC
CTGACCGCGGCGGCGTGCGCGTCGGCAGCGCGCGAGGGTCACCTGCACGT
CCTGGAGTGGCTGCGCGCCGATGCCGACGGCGACGGCGGCGGCTGCCCAT
GGGGCGAGAGCACCTGCGCCGCCGCGGCCGGCGGGGGCCACCTGGCCGTC
CTGCAGTGGTGCAGGCTCAACGGCTGCCCCTGGGACGCCGGCACCTGCAG
CGCCGCCGCCAGAGCGGGAGGGCTTGCCGTCTTGTGGTGGTGCAGGCGCA
ACGGCTGCCCCTGGGACGAGCGGACGTGTGCCGGGGCCGCGGCGGGGGGG
CACTTCGAGCTGCTCGAGTGGTGCCGCCTCGGCGGCTGCCCCTGGGACGA
GGACACCTGCGTTCAGGCCGCCTCCGGGGGGCACCGCGGACATCCTGTCC
CACCTGGTGGGGTTCGTCCCGGACGGGCAGTTCCTGTTCTTCGCGCCGGT
GTCCAGGAGCTGGAGGGCGGCGTGGGGGCGGCGCCCCGCGCTCACCGACT
TCCTCTCGGCGGAGACCTCGCCGTCCCAGCTCCGGTACAGCTTCCGCTCC
GGCCTCCCCCGCGAGGGCGTCGACTGGTGCGCCCTCTCCGCGCGGCTGGG
GAACCTGGGGGTCCTCAGGTGGGCGCGGGGGGAGGGGGGGGGCGGGGGGA
AGGGGTGCCCGTGGGACGAGCAGACGTGCGCGCTGGCCGCGGAGGGGGGG
CACCTCGAGCTGCTCCTCTGGGCGCGGCGCGGGGGCTGTCCCTGGGATGA
GGGGGTCTGCTCGGCGGCGGCGGCCCGGGGCGACGTGGGGATGCTGCAGG
CGGCCCGGCGGATGGGATGTCCCTGGACGGCCGAGGCCTGCGCCTCCGCC
GCGGGCGGGGGGCACCTGGAGGCCCTGCGGTGGTGCCGGCGGGGGGGGTG
CCCCTGGGACGAAGCGACCCCCCGCGCCGCGGCCGGGAGCGGCGACCTGT
CCGTGGTCAAGTGGGTCAAGGACGAGGGGTGCACCCTGACCGCGGCGGCG
TGCGCGTCGGCAGCGCGCGAGGGTCACCTGCACGTCCTGGAGTGGCTGCG
CGCCGATGCCGACGGCGACGGCGGCGGCTGCCCATGGGGCGAGAGCACCT
GCGCCGCCGCGGCCGGCGGGGGCCACCTGGCCGTCCTGCAGTGGTGCAGG
CTCAACGGCTGCCCCTGGGACGCCGGCACCTGCAGCGCCGCCGCCAGAGC
GGGAGGGCTTGCCGTCTTGTGGTGGTGCAGGCGCAACGGCTGCCCCTGGG
ACGAGCGGACGTGTGCCGGGGCCGCGGCGGGGGGGCACTTCGAGCTGCTC
GAGTGGTGCCGCCTCGGCGGCTGCCCCTGGGACGAGGACACCTGCGTTCA
GGCCGCCTCCGGGGGGCACCCGGTGTCGTCGGCTGCGCAGAACGGACACC
TGGCTGTGGTCAAGTACGCCGGAGAGAGCGGGTGCGCGTGGAGCGCCGAC
GCGTGCTTCTGGGCGTCCGCGGAGGGGCGCCTCGACGTCCTCGGGTACGC
CAGGGGGCGCGGGTGCCCCTGGGACAAGAGCCAGTGCGTTGCGGCCGCCC
GGTGTCGTCGGCTGCGCAGAACGGACACCTGGCTGTGGTCAAGTACGCCG
GAGAGAGCGGGTGCGCGTGGAGCGCCGACGCGTGCTTCTGGGCGTCCGCG
GAGGGGCGCCTCGACGTCCTCGGGTACGCCAGGGGGCGCGGGTGCCCCTG
GGACAAGAGCCAGTGCGTTGCGGCCGCC
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