mRNA_L-elsbetiae_contig14266.3163.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14266.3163.1
Unique NamemRNA_L-elsbetiae_contig14266.3163.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14266.3163.1 vs. uniprot
Match: D8LM21_ECTSI (Stn1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM21_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.750e-45
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:    1 ARAMELLRAVMSSLHRDGALHFSDKARDVYVLVSRGRVLQPAVEEACRRQRLGLTHENEIIRALQGSALFHHVPGARIRACVHRMKKS-RCAQQXXXXXXXPGSP 312
            A+A+ELLRAVMSSLHRDGALHF D+ARDVYVLVSRGRVL+PAVEEACRR+RLGL+ ENEIIRALQGSAL HHVPGARIRACV+RMKK+ R AQQ       P SP
Sbjct:  296 AKALELLRAVMSSLHRDGALHFLDRARDVYVLVSRGRVLRPAVEEACRRRRLGLSQENEIIRALQGSALLHHVPGARIRACVYRMKKAGRSAQQQQHQQQQPDSP 400
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14266.3163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM21_ECTSI1.750e-4580.00Stn1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14266contigL-elsbetiae_contig14266:2926..3379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue1.1e-36
Seed eggNOG ortholog2880.D8LM21
Hectar predicted targeting categoryother localisation
EggNOG OGs2E4ZN@1,2SBUB@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-14_002570.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size454
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14266.3163.1prot_L-elsbetiae_contig14266.3163.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14266 2935..3240 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.632909-UTR-L-elsbetiae_contig14266:2925..29341622815569.632909-UTR-L-elsbetiae_contig14266:2925..2934Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14266 2926..2934 +
1691682965.4286816-UTR-L-elsbetiae_contig14266:2925..29341691682965.4286816-UTR-L-elsbetiae_contig14266:2925..2934Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14266 2926..2934 +
1622815569.6597571-UTR-L-elsbetiae_contig14266:3240..33791622815569.6597571-UTR-L-elsbetiae_contig14266:3240..3379Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14266 3241..3379 +
1691682965.4490747-UTR-L-elsbetiae_contig14266:3240..33791691682965.4490747-UTR-L-elsbetiae_contig14266:3240..3379Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14266 3241..3379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.6474233-CDS-L-elsbetiae_contig14266:2934..32401622815569.6474233-CDS-L-elsbetiae_contig14266:2934..3240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14266 2935..3240 +
1691682965.4397087-CDS-L-elsbetiae_contig14266:2934..32401691682965.4397087-CDS-L-elsbetiae_contig14266:2934..3240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14266 2935..3240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14266.3163.1

>prot_L-elsbetiae_contig14266.3163.1 ID=prot_L-elsbetiae_contig14266.3163.1|Name=mRNA_L-elsbetiae_contig14266.3163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MELLRAVMSSLHRDGALHFSDKARDVYVLVSRGRVLQPAVEEACRRQRLG
LTHENEIIRALQGSALFHHVPGARIRACVHRMKKSRCAQQQQQQQQQPGS
P*
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mRNA from alignment at L-elsbetiae_contig14266:2926..3379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14266.3163.1 ID=mRNA_L-elsbetiae_contig14266.3163.1|Name=mRNA_L-elsbetiae_contig14266.3163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=454bp|location=Sequence derived from alignment at L-elsbetiae_contig14266:2926..3379+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAGGGCGATGGAGCTGCTGAGGGCGGTCATGTCCAGCCTGCACCGGGA
CGGCGCGCTGCACTTCTCGGACAAGGCCCGGGACGTCTACGTGCTGGTGT
CTCGGGGGCGCGTGCTGCAGCCCGCCGTGGAGGAGGCGTGCCGGCGGCAG
CGGCTCGGGTTGACCCACGAGAACGAGATCATCCGAGCCTTGCAGGGCTC
GGCCCTGTTCCACCACGTGCCTGGAGCGCGGATACGGGCCTGCGTGCATC
GCATGAAGAAGAGTAGGTGCGCGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CCGGGGAGTCCGTAGCTGGCCGATTAAGGAAGATACGAATGGTTTGGCTT
ATAAGATGCAGGGTTGCCAAGAACCGCGATACAGGCAGCTGCTGCTGCTG
AAGCACGAAAAAACGTGTTTTCGAATTTGAATTAGATGGGGTTTTAGATT
CCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14266:2926..3379+

>mRNA_L-elsbetiae_contig14266.3163.1 ID=mRNA_L-elsbetiae_contig14266.3163.1|Name=mRNA_L-elsbetiae_contig14266.3163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig14266:2926..3379+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCTGCTGAGGGCGGTCATGTCCAGCCTGCACCGGGACGGCGCGCT
GCACTTCTCGGACAAGGCCCGGGACGTCTACGTGCTGGTGTCTCGGGGGC
GCGTGCTGCAGCCCGCCGTGGAGGAGGCGTGCCGGCGGCAGCGGCTCGGG
TTGACCCACGAGAACGAGATCATCCGAGCCTTGCAGGGCTCGGCCCTGTT
CCACCACGTGCCTGGAGCGCGGATACGGGCCTGCGTGCATCGCATGAAGA
AGAGTAGGTGCGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGGGGAGT
CCGTAGATGGAGCTGCTGAGGGCGGTCATGTCCAGCCTGCACCGGGACGG
CGCGCTGCACTTCTCGGACAAGGCCCGGGACGTCTACGTGCTGGTGTCTC
GGGGGCGCGTGCTGCAGCCCGCCGTGGAGGAGGCGTGCCGGCGGCAGCGG
CTCGGGTTGACCCACGAGAACGAGATCATCCGAGCCTTGCAGGGCTCGGC
CCTGTTCCACCACGTGCCTGGAGCGCGGATACGGGCCTGCGTGCATCGCA
TGAAGAAGAGTAGGTGCGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCG
GGGAGTCCGTAG
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