mRNA_L-elsbetiae_contig14265.3159.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14265.3159.1
Unique NamemRNA_L-elsbetiae_contig14265.3159.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14265.3159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14265contigL-elsbetiae_contig14265:1380..2479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14265.3159.1prot_L-elsbetiae_contig14265.3159.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14265 1573..2479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.4773798-UTR-L-elsbetiae_contig14265:1379..15721622815569.4773798-UTR-L-elsbetiae_contig14265:1379..1572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14265 1380..1572 +
1691682965.3494468-UTR-L-elsbetiae_contig14265:1379..15721691682965.3494468-UTR-L-elsbetiae_contig14265:1379..1572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14265 1380..1572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.4880452-CDS-L-elsbetiae_contig14265:1572..17481622815569.4880452-CDS-L-elsbetiae_contig14265:1572..1748Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14265 1573..1748 +
1691682965.3605278-CDS-L-elsbetiae_contig14265:1572..17481691682965.3605278-CDS-L-elsbetiae_contig14265:1572..1748Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14265 1573..1748 +
1622815569.5020447-CDS-L-elsbetiae_contig14265:2442..24791622815569.5020447-CDS-L-elsbetiae_contig14265:2442..2479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14265 2443..2479 +
1691682965.3701687-CDS-L-elsbetiae_contig14265:2442..24791691682965.3701687-CDS-L-elsbetiae_contig14265:2442..2479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14265 2443..2479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14265.3159.1

>prot_L-elsbetiae_contig14265.3159.1 ID=prot_L-elsbetiae_contig14265.3159.1|Name=mRNA_L-elsbetiae_contig14265.3159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
MDQDVEAILNAPDSDDDDGLNVQGVSLEDILREDDGGSIDDEDDLLLDDG
ENPPHLHGSSMGAHQELDRWR
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mRNA from alignment at L-elsbetiae_contig14265:1380..2479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14265.3159.1 ID=mRNA_L-elsbetiae_contig14265.3159.1|Name=mRNA_L-elsbetiae_contig14265.3159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1100bp|location=Sequence derived from alignment at L-elsbetiae_contig14265:1380..2479+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCGTGCTTGAGCCACTGCCCAACCTGACGATAACTGGGTTGCAACTCA
ACGGGAAATCGATGATAACCGGACCAGAACCCGAAGTTATTGTGAAATCA
GGGCAACACGCGCAACCCAGCGTCCAAGTGTCGTCGTGCACAACACGCCC
TCGAGCAGCCGGTGCAAGTAGTCTGTAGCAGCAGCAGTCTGCCATGGATC
AGGACGTGGAGGCTATCCTCAACGCACCAGACAGCGACGATGACGATGGT
CTGAACGTGCAAGGGGTAAGCCTGGAAGACATCCTGCGAGAGGACGACGG
TGGCTCTATCGACGATGAAGATGATCTGCTGTTGGACGATGGGGAGAACC
CTCCGCATCTGCATGGAAGGTATATCCGACAGCCGACGGTGTCGTACAAA
CTACAAAGCCAGCGGTTCTCGCCTTCACCACCTAGCCTTGAGTCTGTTGT
TGGGTCATGTTGACTTGAGCGCCCCGCGATCAAGTAGAAGAGGTGTGCTT
CTCCAAGAGGTGTGCTTTTTCCATATGCTTGTATCGTAGGTACGCGGAGA
GAAACAGCTAACAGCACATGCAGTCCAATATGCAACCCATCTGACGCTGT
TTGTTGTATAACAGCAGTGGGACAGCGTTAAGCCCTTACTGCTGACAACA
GTGTGCCCTATCAGATTGTTGTTTTTTTCAGCCTGGGCTACAACAGTTAC
TTGAGGGGTTGGAGGGAACAAATCGACTACTTGTATTATAACTAGGCACA
CCTTACCGGCGGGGCCTGCGAGGAGTGCCTCAGCTGAGATTCTCTTTGTG
ACTATTGGCTCAGCCAAACCAGTCCACTACTGCATTTGAGTCCTGACTCC
AGGACCAACCCACAAACGTGTTCGGCACAACCCCGAGAGCGTTGAATGCG
TCAAACCAAGTCAAACATATCAAATATCATGAGTATCGGCACCGGTCTCT
TCCCTCAGAGTAGCCACCTACATATGTACATACCAACAGCAAGAAGAATT
TTAAGCCCTCGAACGCGGTTGCCTACCTCCCATTCCTTTGAACCTGCTCG
CACCCACCGCCAGCAGCATGGGTGCGCACCAGGAGCTAGACCGATGGCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14265:1380..2479+

>mRNA_L-elsbetiae_contig14265.3159.1 ID=mRNA_L-elsbetiae_contig14265.3159.1|Name=mRNA_L-elsbetiae_contig14265.3159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig14265:1380..2479+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATCAGGACGTGGAGGCTATCCTCAACGCACCAGACAGCGACGATGA
CGATGGTCTGAACGTGCAAGGGGTAAGCCTGGAAGACATCCTGCGAGAGG
ACGACGGTGGCTCTATCGACGATGAAGATGATCTGCTGTTGGACGATGGG
GAGAACCCTCCGCATCTGCATGGAAGATGGATCAGGACGTGGAGGCTATC
CTCAACGCACCAGACAGCGACGATGACGATGGTCTGAACGTGCAAGGGGT
AAGCCTGGAAGACATCCTGCGAGAGGACGACGGTGGCTCTATCGACGATG
AAGATGATCTGCTGTTGGACGATGGGGAGAACCCTCCGCATCTGCATGGA
AGCAGCATGGGTGCGCACCAGGAGCTAGACCGATGGCGACAGCATGGGTG
CGCACCAGGAGCTAGACCGATGGCGA
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