mRNA_L-elsbetiae_contig14242.3149.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14242.3149.1
Unique NamemRNA_L-elsbetiae_contig14242.3149.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14242.3149.1 vs. uniprot
Match: A0A6H5JCP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP2_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 2.890e-82
Identity = 125/152 (82.24%), Postives = 135/152 (88.82%), Query Frame = 1
Query:    1 QVEYVTICIVTAVITFVFWPILRKVSVLSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRGAHPGITIVICCITCSGGGILRDVLTSSPVMVLSAHVQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACLYDLRLPLMV 456
            QVEYVTIC+VTAV+TFV WP+L +VSVLSHMGTG+DGWLSQAIDT+GLASFAVA TQ+GIRR  HPG TIVICCITCSGGGILRDVLTSSPVM LS+H QMYVST A GS AYL ARR S+DPL RIC GFFTV+ILR LACLYDLRLP MV
Sbjct:  279 QVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAIGSGAYLLARRYSKDPLFRICVGFFTVIILRLLACLYDLRLPRMV 430          
BLAST of mRNA_L-elsbetiae_contig14242.3149.1 vs. uniprot
Match: D8LLZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ7_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 3.880e-52
Identity = 85/103 (82.52%), Postives = 90/103 (87.38%), Query Frame = 1
Query:  112 WLSQAIDTIGLASFAVAGTQHGIRRGAHPGITIVICCITCSGGGILRDVLTSSPVMVLSAHVQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRAL 420
            WL +AIDTIGLASFAVA TQ+GIRR  HPG TIVICCITCSGGGILRDVLTSSPVM LS+H QMYVST AFGS AYL ARR S+DPL R+CAGFFTVVILR L
Sbjct:   43 WLVEAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRYSKDPLFRVCAGFFTVVILRLL 145          
BLAST of mRNA_L-elsbetiae_contig14242.3149.1 vs. uniprot
Match: A0A835ZGC7_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC7_9STRA)

HSP 1 Score: 156 bits (395), Expect = 9.980e-45
Identity = 78/149 (52.35%), Postives = 100/149 (67.11%), Query Frame = 1
Query:    1 QVEYVTICIVTAVITFVFWPILRKVSVLSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRGAHPGITIVICCITCSGGGILRDVLTSSPVMVLSAHVQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACLYDLRLP 447
            +VEY+ +CIVT++ TF  WP LR + +LS  G+  DG L + +DTIGL +FAV GTQHGIRR  HP  T+VI  ITCS GG+ RDV+T +P+ V+ +H ++Y +T A GS AYL AR    DPL R+ AGF   V  R  A   DLRLP
Sbjct:  117 EVEYLAMCIVTSIATFYAWPHLRHMPILSASGSSDDGALPRWLDTIGLGAFAVVGTQHGIRRRLHPLATVVIATITCSFGGVTRDVMTKAPIRVMHSHAELYATTAAAGSCAYLIARAAVADPLLRMAAGFGVTVAARFAAWTLDLRLP 265          
BLAST of mRNA_L-elsbetiae_contig14242.3149.1 vs. uniprot
Match: A0A5J4Z897_PORPP (UPF0126 membrane protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z897_PORPP)

HSP 1 Score: 101 bits (251), Expect = 1.400e-22
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 1
Query:    7 EYVTICIVTAVITFVFWPILRKVSVLSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRGAHPGITIVICCITCSGGGILRDVLTSSPVMVLSAHVQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACLYDLRLP 447
            EY+ I + T+++ F FWP      V   +G   D +    ID+  L +F+  GT +GIR G +P I +V   +TC+ GG++RD     PV VL ++ ++Y +T A GS AY+ AR      + RI  G  +  I+R  A  Y  RLP
Sbjct:  196 EYIAIAVATSLLAFFFWP-----DVSDALGITEDEYFINVIDSWSLGAFSCIGTMNGIRAGYNPLIVLVCAVVTCTFGGVVRDTFLKRPVRVLHSYAEIYATTAAVGSIAYMAARAMQLPLVLRISLGLSSTFIMRLWAMKYGTRLP 337          
BLAST of mRNA_L-elsbetiae_contig14242.3149.1 vs. uniprot
Match: A0A0S4JKV7_BODSA (Uncharacterized protein n=2 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JKV7_BODSA)

HSP 1 Score: 89.0 bits (219), Expect = 9.060e-19
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  130 DTIGLASFAVAGTQHGIRRGAHPGITIVICCITCSGGGILRDVLTSSPVMVLSAHVQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACLYDLR 441
            DT+G+ +FAV GT + +R G    IT+V CCITC+GGG++RD L   PV V+    ++Y      G AAYL AR        R+  G  T + LR LA  Y+++
Sbjct:  125 DTLGIGAFAVIGTMYAVRMGFGIIITLVCCCITCTGGGVIRDTLVKRPVRVMHNLEEVYAEAAVSGGAAYLLARGAGLPLQVRVLVGAGTTIALRILATKYNIK 228          
BLAST of mRNA_L-elsbetiae_contig14242.3149.1 vs. uniprot
Match: A0A2D5PAN2_9GAMM (Uncharacterized protein n=3 Tax=Oceanospirillaceae TaxID=135620 RepID=A0A2D5PAN2_9GAMM)

HSP 1 Score: 78.2 bits (191), Expect = 6.060e-15
Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   10 YVTICIVTAVITFVFWPILRKVSVLSHMGTGMDGWLSQAI---DTIGLASFAVAGTQHGIRRGAHPGITIVICCITCSGGGILRDVLTSSPVMVLSAHVQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACLYDLRLP 447
            +++IC++ + +T+   P+L                LS+A+   D +GLA FAVAGT+  ++ GA P I + +  +T S GGI RDVL  S + +++   ++Y++T   GS  YL            +  GF T  ILRALA  + ++LP
Sbjct:   70 WISICLIASAVTYFVTPMLAS--------------LSRALVWMDAVGLALFAVAGTEVALKFGATPLIAVCMGVMTASFGGIARDVLCRSSLTLMNE--ELYITTALAGSVVYLILHELGLAANVDLIGGFCTAFILRALAIKFKIKLP 202          
BLAST of mRNA_L-elsbetiae_contig14242.3149.1 vs. uniprot
Match: A0A099K9X1_COLPS (Uncharacterized protein n=5 Tax=Colwellia TaxID=28228 RepID=A0A099K9X1_COLPS)

HSP 1 Score: 77.4 bits (189), Expect = 1.230e-14
Identity = 50/146 (34.25%), Postives = 77/146 (52.74%), Query Frame = 1
Query:   10 YVTICIVTAVITFVFWPILRKVSVLSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRGAHPGITIVICCITCSGGGILRDVLTSSPVMVLSAHVQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACLYDLRLP 447
            ++ IC+V+  IT+   P L  +       T    W+    D +G+A FAV GT+  +  G  P I I +  +T S GGI RDVL+ S + +++   ++Y++TT  GS  YL+    S  P   +  GF    ILRALA  + ++LP
Sbjct:   70 WIIICLVSTAITYFIAPKLVSI-------TRALIWM----DAVGIALFAVVGTEIALEFGTSPLIAICMGVMTASFGGIARDVLSGSNLTLMNE--ELYITTTLAGSVMYLWLNTLSLPPNYDLIGGFCIAFILRALAISFHIKLP 202          
BLAST of mRNA_L-elsbetiae_contig14242.3149.1 vs. uniprot
Match: A0A2M7ZJK7_9BACT (Uncharacterized protein n=1 Tax=Ignavibacteriales bacterium CG_4_9_14_3_um_filter_30_11 TaxID=1974043 RepID=A0A2M7ZJK7_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 2.690e-13
Identity = 43/106 (40.57%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  130 DTIGLASFAVAGTQHGIRRGAHPGITIVICCITCSGGGILRDVLTSSPVMVLSAHVQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACLYDLRLP 447
            D IGLA F + GTQ     G HP + I++  IT + GG+LRDVL++   ++L   +  Y +    GS  YL A       L     G  TVVILRALA ++ +RLP
Sbjct:  100 DAIGLAFFTITGTQIAESAGLHPILIIIMGTITGTAGGVLRDVLSAEIPLILKRDI--YATAAISGSIVYLLAEFVDIPNLYSALLGIITVVILRALAIIWGIRLP 203          
BLAST of mRNA_L-elsbetiae_contig14242.3149.1 vs. uniprot
Match: K8EPI8_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EPI8_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 6.290e-13
Identity = 38/113 (33.63%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    7 EYVTICIVTAVITFVFWP--ILRKVSVLSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRGAHPGITIVICCITCSGGGILRDVLTSSPVMVLSAHVQMYVSTTAFGSAAY 339
            EY+ + +V +  TF FWP  + ++V     M T ++ WL    D + L  F + G    + R   P + + +  ITC+GGG++RDV    PV VL +H ++Y +T   G+A Y
Sbjct:  270 EYLIVALVASFFTFFFWPKVLSKEVRESKAMETALN-WL----DALSLGGFCIIGANAALVRNLGPLLAVALSAITCTGGGVVRDVFLRQPVRVLHSHAELYGTTAIAGAAVY 377          
BLAST of mRNA_L-elsbetiae_contig14242.3149.1 vs. uniprot
Match: A0A430KNK3_9GAMM (Trimeric intracellular cation channel family protein n=2 Tax=Amphritea TaxID=515417 RepID=A0A430KNK3_9GAMM)

HSP 1 Score: 71.2 bits (173), Expect = 2.620e-12
Identity = 44/147 (29.93%), Postives = 74/147 (50.34%), Query Frame = 1
Query:   10 YVTICIVTAVITFVFWP-ILRKVSVLSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRGAHPGITIVICCITCSGGGILRDVLTSSPVMVLSAHVQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACLYDLRLP 447
            ++ +C++ + IT+   P ++ +   L  M            D +G+A FAV GT+ G+  G  P I + +  +T S GGI RD+L  S + +++   ++Y++T   GS  YL            +  GF    ILRALA ++ L+LP
Sbjct:   70 WIIVCLIASAITYFIAPKLVSRTRALIWM------------DAVGIALFAVVGTEIGLNFGTSPLIAVCMGVMTASFGGIARDLLCGSNLTLMNE--ELYITTMLAGSVTYLILHELHLPDNYDLIGGFLVAFILRALAIIFKLKLP 202          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14242.3149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCP2_9PHAE2.890e-8282.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLZ7_ECTSI3.880e-5282.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZGC7_9STRA9.980e-4552.35UPF0126 domain-containing protein n=1 Tax=Tribonem... [more]
A0A5J4Z897_PORPP1.400e-2236.05UPF0126 membrane protein n=1 Tax=Porphyridium purp... [more]
A0A0S4JKV7_BODSA9.060e-1941.35Uncharacterized protein n=2 Tax=Bodo saltans TaxID... [more]
A0A2D5PAN2_9GAMM6.060e-1532.89Uncharacterized protein n=3 Tax=Oceanospirillaceae... [more]
A0A099K9X1_COLPS1.230e-1434.25Uncharacterized protein n=5 Tax=Colwellia TaxID=28... [more]
A0A2M7ZJK7_9BACT2.690e-1340.57Uncharacterized protein n=1 Tax=Ignavibacteriales ... [more]
K8EPI8_9CHLO6.290e-1333.63Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
A0A430KNK3_9GAMM2.620e-1229.93Trimeric intracellular cation channel family prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14242contigL-elsbetiae_contig14242:3360..4379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue3e-17
Seed eggNOG ortholog2880.D8LE41
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.UPF0126 domain
EggNOG OGs2B6TB@1,2S0MY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionUncharacterised domain UPF0126
Ec32 orthologEc-14_002260.1
Exons2
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.252163-CDS-L-elsbetiae_contig14242:3359..35631622815568.252163-CDS-L-elsbetiae_contig14242:3359..3563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14242 3360..3563 -
1691682964.5696146-CDS-L-elsbetiae_contig14242:3359..35631691682964.5696146-CDS-L-elsbetiae_contig14242:3359..3563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14242 3360..3563 -
1622815568.2636688-CDS-L-elsbetiae_contig14242:4124..43791622815568.2636688-CDS-L-elsbetiae_contig14242:4124..4379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14242 4125..4379 -
1691682964.5815344-CDS-L-elsbetiae_contig14242:4124..43791691682964.5815344-CDS-L-elsbetiae_contig14242:4124..4379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14242 4125..4379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14242.3149.1prot_L-elsbetiae_contig14242.3149.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14242 3360..4379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14242.3149.1

>prot_L-elsbetiae_contig14242.3149.1 ID=prot_L-elsbetiae_contig14242.3149.1|Name=mRNA_L-elsbetiae_contig14242.3149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
QVEYVTICIVTAVITFVFWPILRKVSVLSHMGTGMDGWLSQAIDTIGLAS
FAVAGTQHGIRRGAHPGITIVICCITCSGGGILRDVLTSSPVMVLSAHVQ
MYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACLYDLRLPL
MV*
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mRNA from alignment at L-elsbetiae_contig14242:3360..4379-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14242.3149.1 ID=mRNA_L-elsbetiae_contig14242.3149.1|Name=mRNA_L-elsbetiae_contig14242.3149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig14242:3360..4379- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTCGAGTACGTGACGATATGCATCGTGACAGCTGTAATCACTTTCGT CTTCTGGCCGATACTGCGCAAAGTGTCCGTTCTTTCGCACATGGGCACCG GCATGGACGGGTGGCTGTCACAGGCCATAGACACGATCGGCCTGGCGTCC TTCGCGGTGGCGGGGACCCAGCACGGCATCCGTCGGGGGGCCCATCCGGG CATCACCATCGTCATCTGCTGCATCACCTGCTCCGGCGGGGGCATATTGC GCGATGTAAGTCAAGCCAGCCAGCCCCCTCTGTTTCCTGTCTTCGCGTTT TTCGCTGCTTTAGAGGCGCGCGGTATTTGCCGAGAGACGTGTTTTTGCTT CGATAAGTTGTCCATTGTTTTTGAGCTTGTTGTTGTTTGTCCGTGAGAGT TTGCGTCGCCAGCGAGAAGACTACATATGTATTGCAGCGCGGCATAGCGC ATGCTAGCCCTGTTCTACGAAGAAAGAGCTCGAGACGGGCGACGGACGAC TTTGGCAAGCAATTTTTAATGACTGCATACGAATGTCAGCAGTTTACGTC CGGTCTGTGAAAATATCGTTCCAGAGGGATCTGTTGTAGGCATACCATGT AACATACTAACCTCCTTTTCGTCCCATCTTGTGAAGGATCGTGATAATGA TTTGGTGTCTGCACCAACGGACCACAACCACCATCATCGCCGATGTATAT AGCAGCTGCAGCAGCGAAAGCAACTACATAAACCGCGACCCAGTCTCTTC GAACTCTGAAATAAGTTTTTGAAAATTTGAACCTGACACCGCCTCTCAAT CGCCTACCGACTGCAGGTTCTCACCTCCTCGCCGGTGATGGTGCTTTCGG CTCACGTCCAGATGTACGTCAGCACGACAGCCTTCGGTTCGGCGGCGTAC CTGTACGCTCGGAGGCGTTCGAGAGACCCGCTGACGCGAATCTGCGCAGG TTTTTTCACCGTTGTCATCCTGCGCGCGCTGGCGTGTTTGTACGACCTCC GCCTTCCTTTAATGGTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14242:3360..4379-

>mRNA_L-elsbetiae_contig14242.3149.1 ID=mRNA_L-elsbetiae_contig14242.3149.1|Name=mRNA_L-elsbetiae_contig14242.3149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig14242:3360..4379- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTCGAGTACGTGACGATATGCATCGTGACAGCTGTAATCACTTTCGT
CTTCTGGCCGATACTGCGCAAAGTGTCCGTTCTTTCGCACATGGGCACCG
GCATGGACGGGTGGCTGTCACAGGCCATAGACACGATCGGCCTGGCGTCC
TTCGCGGTGGCGGGGACCCAGCACGGCATCCGTCGGGGGGCCCATCCGGG
CATCACCATCGTCATCTGCTGCATCACCTGCTCCGGCGGGGGCATATTGC
GCGATCAGGTCGAGTACGTGACGATATGCATCGTGACAGCTGTAATCACT
TTCGTCTTCTGGCCGATACTGCGCAAAGTGTCCGTTCTTTCGCACATGGG
CACCGGCATGGACGGGTGGCTGTCACAGGCCATAGACACGATCGGCCTGG
CGTCCTTCGCGGTGGCGGGGACCCAGCACGGCATCCGTCGGGGGGCCCAT
CCGGGCATCACCATCGTCATCTGCTGCATCACCTGCTCCGGCGGGGGCAT
ATTGCGCGATGTTCTCACCTCCTCGCCGGTGATGGTGCTTTCGGCTCACG
TCCAGATGTACGTCAGCACGACAGCCTTCGGTTCGGCGGCGTACCTGTAC
GCTCGGAGGCGTTCGAGAGACCCGCTGACGCGAATCTGCGCAGGTTTTTT
CACCGTTGTCATCCTGCGCGCGCTGGCGTGTTTGTACGACCTCCGCCTTC
CTTTAATGGTGTAGGTTCTCACCTCCTCGCCGGTGATGGTGCTTTCGGCT
CACGTCCAGATGTACGTCAGCACGACAGCCTTCGGTTCGGCGGCGTACCT
GTACGCTCGGAGGCGTTCGAGAGACCCGCTGACGCGAATCTGCGCAGGTT
TTTTCACCGTTGTCATCCTGCGCGCGCTGGCGTGTTTGTACGACCTCCGC
CTTCCTTTAATGGTGTAG
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