mRNA_L-elsbetiae_contig14239.3145.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14239.3145.1
Unique NamemRNA_L-elsbetiae_contig14239.3145.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14239.3145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14239contigL-elsbetiae_contig14239:46..839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size796
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.0965369-UTR-L-elsbetiae_contig14239:45..4071622815568.0965369-UTR-L-elsbetiae_contig14239:45..407Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14239 46..407 +
1691682964.5148702-UTR-L-elsbetiae_contig14239:45..4071691682964.5148702-UTR-L-elsbetiae_contig14239:45..407Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14239 46..407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.1118946-CDS-L-elsbetiae_contig14239:407..8391622815568.1118946-CDS-L-elsbetiae_contig14239:407..839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14239 408..839 +
1691682964.5249417-CDS-L-elsbetiae_contig14239:407..8391691682964.5249417-CDS-L-elsbetiae_contig14239:407..839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14239 408..839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14239.3145.1prot_L-elsbetiae_contig14239.3145.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14239 408..839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14239.3145.1

>prot_L-elsbetiae_contig14239.3145.1 ID=prot_L-elsbetiae_contig14239.3145.1|Name=mRNA_L-elsbetiae_contig14239.3145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MLLTKIKRDKCNGKMQGMEREQKKTRIQHRPRTISTPGWLYLENHLLFTQ
DGVITKHATHMPLLKAPMRGWRKSRSWPTPHEYSNRLDHSSSSSSSSNHN
ERPTGNRTLTNKHPHPPQTDNRRQQRSSTTTTATATSTLTTTTF
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mRNA from alignment at L-elsbetiae_contig14239:46..839+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14239.3145.1 ID=mRNA_L-elsbetiae_contig14239.3145.1|Name=mRNA_L-elsbetiae_contig14239.3145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=794bp|location=Sequence derived from alignment at L-elsbetiae_contig14239:46..839+ (Laminarionema elsbetiae ELsaHSoW15)
TAGCGACTGGCAAGAACCTCTCCAAGGAGATACCCCCCGCACGACAACCC
CTATCCGGCTACTGTGCGTACAACGTTTTTTTTTGCGTAAACTTCGAAGT
TCCGTACCACTCTCTTCGTCTAGACTATACATATGCCGGATGGACCTACT
ACAGTAACGATGCACATATCGTCTCTTCTGGACAAGTATCTACTTCTCGA
CCAAGCCTTTAAAGTAGAGCTTCCGACGACAGCTTCCGCCGGCTCTATTA
TAGTAAACGCAGACAGCGTTTGGCGGCTTCAGAACGAAGGCGTCCGCAAA
AAACACGGATGTACACGGCACTACGGACGTACCTACACACACGTAATCCC
GATATGTAGCCGATGCTACTCACAAAAATAAAAAGGGACAAATGTAATGG
GAAAATGCAAGGGATGGAGAGGGAACAAAAAAAGACACGCATACAACATC
GACCCCGGACGATATCAACACCGGGCTGGCTCTATCTAGAAAATCACTTA
CTGTTTACACAAGATGGGGTTATCACCAAACATGCAACACATATGCCACT
CTTGAAAGCGCCTATGCGGGGCTGGCGCAAATCTCGCTCGTGGCCAACCC
CCCATGAATACTCGAACCGACTTGACCACAGCAGCAGCAGCAGCAGCAGC
AGCAACCACAACGAACGCCCAACTGGCAACAGGACCTTAACAAACAAACA
CCCACACCCACCACAAACAGACAACAGACGACAACAGCGATCGTCGACAA
CAACGACGGCAACAGCAACATCAACATTGACAACGACTACTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14239:46..839+

>mRNA_L-elsbetiae_contig14239.3145.1 ID=mRNA_L-elsbetiae_contig14239.3145.1|Name=mRNA_L-elsbetiae_contig14239.3145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig14239:46..839+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTACTCACAAAAATAAAAAGGGACAAATGTAATGGGAAAATGCAAGG
GATGGAGAGGGAACAAAAAAAGACACGCATACAACATCGACCCCGGACGA
TATCAACACCGGGCTGGCTCTATCTAGAAAATCACTTACTGTTTACACAA
GATGGGGTTATCACCAAACATGCAACACATATGCCACTCTTGAAAGCGCC
TATGCGGGGCTGGCGCAAATCTCGCTCGTGGCCAACCCCCCATGAATACT
CGAACCGACTTGACCACAGCAGCAGCAGCAGCAGCAGCAGCAACCACAAC
GAACGCCCAACTGGCAACAGGACCTTAACAAACAAACACCCACACCCACC
ACAAACAGACAACAGACGACAACAGCGATCGTCGACAACAACGACGGCAA
CAGCAACATCAACATTGACAACGACTACTTTTATGCTACTCACAAAAATA
AAAAGGGACAAATGTAATGGGAAAATGCAAGGGATGGAGAGGGAACAAAA
AAAGACACGCATACAACATCGACCCCGGACGATATCAACACCGGGCTGGC
TCTATCTAGAAAATCACTTACTGTTTACACAAGATGGGGTTATCACCAAA
CATGCAACACATATGCCACTCTTGAAAGCGCCTATGCGGGGCTGGCGCAA
ATCTCGCTCGTGGCCAACCCCCCATGAATACTCGAACCGACTTGACCACA
GCAGCAGCAGCAGCAGCAGCAGCAACCACAACGAACGCCCAACTGGCAAC
AGGACCTTAACAAACAAACACCCACACCCACCACAAACAGACAACAGACG
ACAACAGCGATCGTCGACAACAACGACGGCAACAGCAACATCAACATTGA
CAACGACTACTTTT
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