mRNA_L-elsbetiae_contig1421.3131.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1421.3131.1
Unique NamemRNA_L-elsbetiae_contig1421.3131.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1421.3131.1 vs. uniprot
Match: D7FWK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK2_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 3.270e-14
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 3 
Query:   90 GSEKREDENEIPPQEDTTALDPVPQSDPDDPALVASRELIEMESAEVERDLADLDARLAAALADEDYDEAAELDSQMTE 326
            GS    D     P++  T ++ VP+   DDPA+VASRELIE+E+AEVERDLADLDARLA AL DEDYD+AAELD+QMT+
Sbjct: 1075 GSADGNDVEAAKPEDTATHVEAVPRKAEDDPAMVASRELIELEAAEVERDLADLDARLATALTDEDYDQAAELDAQMTQ 1153
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1421.3131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWK2_ECTSI3.270e-1463.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1421contigL-elsbetiae_contig1421:18816..22949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue3.8e-15
Seed eggNOG ortholog2880.D7FWK2
Hectar predicted targeting categoryother localisation
EggNOG OGs2CNI7@1,2QWH7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1865
Cds size1074
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.5763862-UTR-L-elsbetiae_contig1421:18815..188201622815566.5763862-UTR-L-elsbetiae_contig1421:18815..18820Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1421 18816..18820 +
1691682963.5339336-UTR-L-elsbetiae_contig1421:18815..188201691682963.5339336-UTR-L-elsbetiae_contig1421:18815..18820Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1421 18816..18820 +
1622815566.6338155-UTR-L-elsbetiae_contig1421:22163..229491622815566.6338155-UTR-L-elsbetiae_contig1421:22163..22949Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1421 22164..22949 +
1691682963.6090524-UTR-L-elsbetiae_contig1421:22163..229491691682963.6090524-UTR-L-elsbetiae_contig1421:22163..22949Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1421 22164..22949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.5865142-CDS-L-elsbetiae_contig1421:18820..188771622815566.5865142-CDS-L-elsbetiae_contig1421:18820..18877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1421 18821..18877 +
1691682963.5439901-CDS-L-elsbetiae_contig1421:18820..188771691682963.5439901-CDS-L-elsbetiae_contig1421:18820..18877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1421 18821..18877 +
1622815566.596115-CDS-L-elsbetiae_contig1421:19284..194041622815566.596115-CDS-L-elsbetiae_contig1421:19284..19404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1421 19285..19404 +
1691682963.5625925-CDS-L-elsbetiae_contig1421:19284..194041691682963.5625925-CDS-L-elsbetiae_contig1421:19284..19404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1421 19285..19404 +
1622815566.6055849-CDS-L-elsbetiae_contig1421:19928..200001622815566.6055849-CDS-L-elsbetiae_contig1421:19928..20000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1421 19929..20000 +
1691682963.5801966-CDS-L-elsbetiae_contig1421:19928..200001691682963.5801966-CDS-L-elsbetiae_contig1421:19928..20000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1421 19929..20000 +
1622815566.6150582-CDS-L-elsbetiae_contig1421:20766..208381622815566.6150582-CDS-L-elsbetiae_contig1421:20766..20838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1421 20767..20838 +
1691682963.5909772-CDS-L-elsbetiae_contig1421:20766..208381691682963.5909772-CDS-L-elsbetiae_contig1421:20766..20838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1421 20767..20838 +
1622815566.6243854-CDS-L-elsbetiae_contig1421:21410..221631622815566.6243854-CDS-L-elsbetiae_contig1421:21410..22163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1421 21411..22163 +
1691682963.6015148-CDS-L-elsbetiae_contig1421:21410..221631691682963.6015148-CDS-L-elsbetiae_contig1421:21410..22163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1421 21411..22163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1421.3131.1prot_L-elsbetiae_contig1421.3131.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1421 18821..22163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1421.3131.1

>prot_L-elsbetiae_contig1421.3131.1 ID=prot_L-elsbetiae_contig1421.3131.1|Name=mRNA_L-elsbetiae_contig1421.3131.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=358bp
MTGGSEEDAAEKGGRGEEGDGAVAAVAEGSEKREDENEIPPQEDTTALDP
VPQSDPDDPALVASRELIEMESAEVERDLADLDARLAAALADEDYDEAAE
LDSQMTEVRTRLADFAAQAAALTQPRTARSQIDSVDGGSGGASCGGGGGD
PGGEVSATSPPSGTEQQQQPTEDGVSIAGEDGQGGGSHDAIDSDRVSSDG
VDNDGGGDDGGVDGAGTVEGCATSDTQEGDAVKDVANGPASPVVTDAPEG
STGQEAGAEGAGNGDDDAPARGSDGAEVDEVDVEVSPTLATVEGPAAVDL
DDPRGADETESVAIQAQEGSASEDGDGSNARGGDELESGSVEETPVGQGD
GAGVVDV*
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mRNA from alignment at L-elsbetiae_contig1421:18816..22949+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1421.3131.1 ID=mRNA_L-elsbetiae_contig1421.3131.1|Name=mRNA_L-elsbetiae_contig1421.3131.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4134bp|location=Sequence derived from alignment at L-elsbetiae_contig1421:18816..22949+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGATGACAGGGGGTTCGGAGGAGGATGCGGCGGAGAAGGGGGGGAGG
GGAGAAGAAGGGGTGAGTTGAGAGGGGGCCGTGCTTTACGGCAACCTGGA
TGGGGGTTTGAGGCGAAGGAAACAGGATGCACGGCTGTTGGTCGCCTGAT
ACACAGATACCATCCATGCAAACAATAGATAGGTTGTCTGGCGTTTCTGA
TTGTTGTGTGCTATTTATGTGCGCACAAATCAGTGCGCGCTAATTTTTTG
TTATTGTTGTTGCAAGCAAGAGGTTTGTCATGCGTGCCGCACCGCCAAAG
CGTCGACGCCTACATGGAGTGCTCTCGGTCCTAGCCCGTTGTTGTTTTTG
CCAAATAGGGGCACAAGTGGTGAATAGTGGCCATGCCTGGCCGGAAAAGT
ACTGTAAGTGTGCCTCTTCACATACTTAACCTGCCGTCGCTGTTTCCTCT
GATAAAAAACGCCGCATAGGATGGTGCGGTTGCGGCTGTCGCTGAGGGGT
CAGAGAAAAGAGAGGACGAGAACGAAATACCCCCTCAGGAAGATACCACC
GCGTTGGACCCCGTGCCACAGAGCGACCCCGACGACCCGGTGAGAGAAAT
CACGGTTCCCCTTTCTAAACACGATGTTCTACGCAGTCCGCCTTTTTATC
TACCCAATCTATCGAAAACACGAGCTCGAGTTTGGCCAACTTTTCTCGGC
CATTTTTTTTCTTTCTTTTCCACCCGTTATTGGCTTATTCGTCGTCTGCC
CCACTGGCCCCCTTCTTCCTGTACCGTGCGGTTATGTCACGGGGTTGTGG
AACTGCTGTGTATGGCAGGAGGGGCTTACCGCAGCTCACCTTGCTTTGTT
CCAGTGATCGTCTTGACTCGTGCCGGAAGAGTGAAGTCACGCCAGCCAAC
TCATGCAGATCGCCCGCTGCCATACCTCCCAGCCTTGTGTGCTTCTGTTT
GTCTGTTTTTTGTGTTTATTCATGCTTCTGTTTTTTTTTGTTCCTTCGTG
CTTCTGTTTGTTTGTTTGTTTGTTTGTTTATCCGTGCTTTTGTTTATTTG
TTTGTGTTTTGTTTGTTTATCCGTGTTTCTGTCTGTTTGCTTGTTTATTT
ATTCGTGCTTCAGGCTTTGGTCGCCTCGCGAGAGCTGATCGAGATGGAGT
CTGCCGAGGTCGAGCGTGATCTCGCGGACTTAGATGTGAGTTTCGGGTCG
AAGGGTCCGACCCGGCGTGTACGCGGTTGAATGGTTCAGGCGCGGCGGGG
AATCTACTCAAAGAGTCCAATCTTGGTCCACTAGATAAATGCGGTTATGT
ATCAGGTTTCAATATTTTCGTTGATTAGCCCCGCGGTTGGTAGAACTCGG
TTGGTAGAATAAGCATGAGAGCTAGATTCGATTCGGTTCGATTTGATTCG
CAGCAGCAGTGGGTGCCACTCGTTGGCACGACAGCAACCCAAGGTGGTTC
GCGTTGACGGTTTGACCCCCTCTGCCCGCGCGCGCACCTCGGTGTGCGTT
GTTGAAACCCAACCCGGACCGGGAGATGGACCGGTCTCTGCTTCGTTCTC
GTGAAATTCGATGCAGAATACGCGAGCGAAAGAAGGGCACGAAACAGCTA
CCTAGTTTCCTTCTAAACGGGGGACGGACGCTCAACAGCCACAGCAGTAG
AAAACATAAGAGCCTACGTACCGTCTCGTCTACTCAGCTGGTCTTCTCGA
CTTGGTGCTCGGTTTTATGGCGTGCGCCTGCCTTGTTTGGGTTCTCGATC
AGAACGTCCGCCCTGCTCACAGCCCATGTGGTGTATTTTTGCGTTTCCTG
CCTTTTAGATACAAAAAAACAAAAAAGGAGGTCGGTCCTCTTGCTTGGTT
GCATTTTCGTTCCACTCTCCATTGTTTTCGCGGTCGGTCGTTTTGTTGCG
ATCGTGTTTCCTTTTCTCGCGGTGTGGTTGGTTGTTTGATGCCTATTTCA
GGCTCGGTTGGCGGCGGCACTGGCGGACGAGGATTACGACGAGGCGGCTG
AACTGGACTCTCAGATGACGGAGGTATATACTGCTTGTAGTATATAGGAG
CACGGCATCATATATTTTATGTTTACCCACAACAAGTGTGCATTTGTCCC
ATTCCGTCGACCCCGTGTCTTTTTGCTGCGCAGTTGTCTGATGGTGCCTT
TCGTATCTATTTTGTTTTCAACGTGCGCTTCCGATGAGCAAAGCGATGAC
AGCGCGGCTGCGAGCGAGGTTGCGGCGGCGCTCACAGAAGTGTAATGGAG
ATGCTGCTTTTTCCTCATGTACCCCGCACAGTTTGCACAACGCGCCGAAA
ACTCTCGGTGCAAGTAGGTATTAGTATGAAGCAACATTTGGGCGTATTTT
CACCGGTGGGCCCCGCAACAAGCTCTGGGTTATGGGTACATAGATTTTTG
TTGTTTTGCCCCTCCCACAACGCTGCGGATTCAACGTCCGTCGAAGTCAC
AAAGCAACAGTAGTATTTCCGTACCAGCTTCGCTCAAGAATAGTTTCGTA
CAGCGCTGTCTTGTATCGGGCCCGTCTTCTTTTTAGCACCGGGTGCACGC
ATAAACGACCTTCGCCTCCCGCTTTGCTTCCCCCTCTTTGGCCAGGTACG
CACTCGCCTTGCTGATTTCGCCGCGCAGGCCGCCGCTCTCACCCAACCCA
GGACCGCCCGCAGCCAAATCGACTCCGTTGATGGAGGCAGTGGCGGCGCA
AGCTGCGGCGGCGGCGGTGGTGACCCTGGGGGCGAGGTTTCGGCAACCTC
ACCACCAAGCGGCACCGAACAGCAGCAGCAGCCTACGGAAGATGGCGTTT
CTATCGCTGGTGAGGATGGTCAAGGCGGTGGGAGTCACGATGCAATCGAC
AGTGACAGAGTCAGCAGTGATGGTGTCGACAATGATGGCGGCGGCGATGA
TGGTGGAGTGGACGGTGCCGGCACTGTCGAGGGGTGTGCGACATCTGATA
CCCAGGAGGGCGACGCGGTGAAAGATGTTGCCAATGGTCCGGCAAGCCCT
GTTGTGACTGACGCGCCGGAAGGGTCGACAGGTCAAGAGGCTGGTGCCGA
AGGTGCAGGAAACGGCGACGACGACGCACCGGCGCGTGGCAGCGACGGCG
CCGAGGTCGACGAGGTCGACGTCGAGGTCAGCCCGACCCTGGCTACCGTC
GAAGGTCCTGCTGCTGTGGATCTCGACGATCCTAGGGGCGCAGACGAGAC
GGAGAGCGTTGCCATCCAGGCGCAAGAAGGCTCGGCAAGTGAGGATGGGG
ATGGCAGCAATGCAAGAGGGGGCGATGAGCTGGAGAGCGGCAGTGTAGAG
GAGACCCCGGTGGGGCAGGGGGACGGCGCGGGTGTGGTGGATGTCTAGCC
CGGCAACGGCAAATTGGGGCCAGAAGTGGGCGAAGTAGCGGGTCCCGTGT
TTTCTGTCCGAGGCGATGCGGAGGTGGGCAGTGGAGTTTTACATTCGTAT
TGACTGTGATGAGTGTTGTGTGTTGGGTCTCTCCGCGTGGTGGTGGTGTC
TCGTTGGGTTTTTCTTCTCGTCAATTTCGATATCTTGCACGTTCATTCAA
GCATCAAGCTGGGTGTCGGCATACCTCGATGACGAGGTGGTGGGCCCACC
CAGTGCTTGCTAGTTTCGCCCTCGTTGAACGAGCCTGGAAGTTTGCGACC
TCCTCCTTTGTTTGGCCGCAGGGCGTTCGTGGCCGACATCCTGTGCCGGC
GCCATTCAGTTTGGTTTTCACGCCTGACAAAAACAAATTCATATATTTAC
GTTGTACGTTACCTTTTGTTGTGTTTGCCCGGACAGATTGGTGAGTGTTC
GTGCTTTCCCTAAATCAATGCGTTTCCGCTTTCAGAGACTTGACGGAGAC
TATCTTTGACCACGAGCAAAGTTCGGGCCAAGTTGTTGGCGGTGTGTGAG
TATGTAGCGCGGCTTGACACATGGCAACAATAGTGTGCGATGCCGATGTT
CCTGTCGAAGCGTGTAGTCACAGCAGTGGGGTCGTGGCTGGCTCCGGCCA
GCGTTGCATGATGCAATCAATTGTGGTGTACATTACAGATGAACGACGTC
GGTTGTTCTTGTTGGTTGTGCTGGAGGTTAGGTTTTCCATCTTGTGGACG
AAACAATACGAAAACTGATTTAACAACTTTTACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1421:18816..22949+

>mRNA_L-elsbetiae_contig1421.3131.1 ID=mRNA_L-elsbetiae_contig1421.3131.1|Name=mRNA_L-elsbetiae_contig1421.3131.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2148bp|location=Sequence derived from alignment at L-elsbetiae_contig1421:18816..22949+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAGGGGGTTCGGAGGAGGATGCGGCGGAGAAGGGGGGGAGGGGAGA
AGAAGGGATGACAGGGGGTTCGGAGGAGGATGCGGCGGAGAAGGGGGGGA
GGGGAGAAGAAGGGGATGGTGCGGTTGCGGCTGTCGCTGAGGGGTCAGAG
AAAAGAGAGGACGAGAACGAAATACCCCCTCAGGAAGATACCACCGCGTT
GGACCCCGTGCCACAGAGCGACCCCGACGACCCGGATGGTGCGGTTGCGG
CTGTCGCTGAGGGGTCAGAGAAAAGAGAGGACGAGAACGAAATACCCCCT
CAGGAAGATACCACCGCGTTGGACCCCGTGCCACAGAGCGACCCCGACGA
CCCGGCTTTGGTCGCCTCGCGAGAGCTGATCGAGATGGAGTCTGCCGAGG
TCGAGCGTGATCTCGCGGACTTAGATGCTTTGGTCGCCTCGCGAGAGCTG
ATCGAGATGGAGTCTGCCGAGGTCGAGCGTGATCTCGCGGACTTAGATGC
TCGGTTGGCGGCGGCACTGGCGGACGAGGATTACGACGAGGCGGCTGAAC
TGGACTCTCAGATGACGGAGGCTCGGTTGGCGGCGGCACTGGCGGACGAG
GATTACGACGAGGCGGCTGAACTGGACTCTCAGATGACGGAGGTACGCAC
TCGCCTTGCTGATTTCGCCGCGCAGGCCGCCGCTCTCACCCAACCCAGGA
CCGCCCGCAGCCAAATCGACTCCGTTGATGGAGGCAGTGGCGGCGCAAGC
TGCGGCGGCGGCGGTGGTGACCCTGGGGGCGAGGTTTCGGCAACCTCACC
ACCAAGCGGCACCGAACAGCAGCAGCAGCCTACGGAAGATGGCGTTTCTA
TCGCTGGTGAGGATGGTCAAGGCGGTGGGAGTCACGATGCAATCGACAGT
GACAGAGTCAGCAGTGATGGTGTCGACAATGATGGCGGCGGCGATGATGG
TGGAGTGGACGGTGCCGGCACTGTCGAGGGGTGTGCGACATCTGATACCC
AGGAGGGCGACGCGGTGAAAGATGTTGCCAATGGTCCGGCAAGCCCTGTT
GTGACTGACGCGCCGGAAGGGTCGACAGGTCAAGAGGCTGGTGCCGAAGG
TGCAGGAAACGGCGACGACGACGCACCGGCGCGTGGCAGCGACGGCGCCG
AGGTCGACGAGGTCGACGTCGAGGTCAGCCCGACCCTGGCTACCGTCGAA
GGTCCTGCTGCTGTGGATCTCGACGATCCTAGGGGCGCAGACGAGACGGA
GAGCGTTGCCATCCAGGCGCAAGAAGGCTCGGCAAGTGAGGATGGGGATG
GCAGCAATGCAAGAGGGGGCGATGAGCTGGAGAGCGGCAGTGTAGAGGAG
ACCCCGGTGGGGCAGGGGGACGGCGCGGGTGTGGTGGATGTCTAGGTACG
CACTCGCCTTGCTGATTTCGCCGCGCAGGCCGCCGCTCTCACCCAACCCA
GGACCGCCCGCAGCCAAATCGACTCCGTTGATGGAGGCAGTGGCGGCGCA
AGCTGCGGCGGCGGCGGTGGTGACCCTGGGGGCGAGGTTTCGGCAACCTC
ACCACCAAGCGGCACCGAACAGCAGCAGCAGCCTACGGAAGATGGCGTTT
CTATCGCTGGTGAGGATGGTCAAGGCGGTGGGAGTCACGATGCAATCGAC
AGTGACAGAGTCAGCAGTGATGGTGTCGACAATGATGGCGGCGGCGATGA
TGGTGGAGTGGACGGTGCCGGCACTGTCGAGGGGTGTGCGACATCTGATA
CCCAGGAGGGCGACGCGGTGAAAGATGTTGCCAATGGTCCGGCAAGCCCT
GTTGTGACTGACGCGCCGGAAGGGTCGACAGGTCAAGAGGCTGGTGCCGA
AGGTGCAGGAAACGGCGACGACGACGCACCGGCGCGTGGCAGCGACGGCG
CCGAGGTCGACGAGGTCGACGTCGAGGTCAGCCCGACCCTGGCTACCGTC
GAAGGTCCTGCTGCTGTGGATCTCGACGATCCTAGGGGCGCAGACGAGAC
GGAGAGCGTTGCCATCCAGGCGCAAGAAGGCTCGGCAAGTGAGGATGGGG
ATGGCAGCAATGCAAGAGGGGGCGATGAGCTGGAGAGCGGCAGTGTAGAG
GAGACCCCGGTGGGGCAGGGGGACGGCGCGGGTGTGGTGGATGTCTAG
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