mRNA_L-elsbetiae_contig14203.3129.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14203.3129.1
Unique NamemRNA_L-elsbetiae_contig14203.3129.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14203.3129.1 vs. uniprot
Match: A0A4V6WK43_9PEZI (Uncharacterized protein n=2 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4V6WK43_9PEZI)

HSP 1 Score: 58.2 bits (139), Expect = 1.200e-7
Identity = 33/92 (35.87%), Postives = 46/92 (50.00%), Query Frame = 1
Query:   25 QLVSMAALIRAGANPNSGRPDNWETPLHMAVRYKHVKAARLLLRAGTVLSARNSKGWTALHIAAMVYSLDTVNLLLRYGALETDKGGIGETP 300
            +L  + + ++ G N N   P    TP+  A RY+   AARLLL++G  L AR+  G TALH AA     +   +LL  GA   D   +   P
Sbjct:  474 RLSDITSALKDGYNVNESDPTTGVTPIMEAARYRRWDAARLLLKSGAKLRARDKDGNTALHFAAKEGDTEMCQMLLDAGAHAADCNKLNSQP 565          
BLAST of mRNA_L-elsbetiae_contig14203.3129.1 vs. uniprot
Match: E2AFM2_CAMFO (Transient receptor potential cation channel protein painless n=1 Tax=Camponotus floridanus TaxID=104421 RepID=E2AFM2_CAMFO)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-7
Identity = 37/84 (44.05%), Postives = 47/84 (55.95%), Query Frame = 1
Query:    1 LHNATEHEQLVSMAALIRAGANPNSGRPDNWETPLHMAVRYKHVKAARLLLRAGTVLSARNSKGWTALHIAAMVYSLDTVNLLL 252
            +H ATE   + ++AAL+ A    N       +T LH+AVR K +K A LLL  G   S  NSKG TALH+AAM    D   L+L
Sbjct:  106 IHFATEGGHVDTLAALL-AEPTINPNLEAGQQTALHIAVRKKDLKCADLLLERGASASIPNSKGLTALHLAAMKGQRDMAELIL 188          
BLAST of mRNA_L-elsbetiae_contig14203.3129.1 vs. uniprot
Match: A0A0J7L592_LASNI (Transient receptor potential cation channel protein painless-like protein n=3 Tax=Formicinae TaxID=7479 RepID=A0A0J7L592_LASNI)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-7
Identity = 37/85 (43.53%), Postives = 47/85 (55.29%), Query Frame = 1
Query:    1 LHNATEHEQLVSMAALIRAGANPNSGRPDNWETPLHMAVRYKHVKAARLLLRAGTVLSARNSKGWTALHIAAMVYSLDTVNLLLR 255
            +H ATE   + ++AAL+ A    N       +T LH+AVR K +  A LLL  G   S  NSKG TALH+AAM    D V L+L 
Sbjct:  106 IHFATEGGHVDTLAALL-AEPTINPNLEAGQQTALHIAVRKKDLACADLLLERGASASIPNSKGLTALHLAAMKTQRDMVELILN 189          
BLAST of mRNA_L-elsbetiae_contig14203.3129.1 vs. uniprot
Match: A0A8J5R244_9HYME (Uncharacterized protein n=1 Tax=Cotesia typhae TaxID=2053667 RepID=A0A8J5R244_9HYME)

HSP 1 Score: 55.1 bits (131), Expect = 1.370e-6
Identity = 37/109 (33.94%), Postives = 53/109 (48.62%), Query Frame = 1
Query:    1 LHNATEHEQLVSMAALIRAGANPNSGRPDNWETPLHMAVRYKHVKAARLLLRAGT---------VLSARNSKGWTALHIAAMVYSLDTVNLLLRYGALETDKGGIGETP 300
            LH A        + AL++AGA+PN+ +    ETPLH A       +  LLL  G           ++A+NS+G T LH+AA+  S DT+  L+  G     +   G TP
Sbjct:  267 LHYAVMSNAADCVEALLKAGASPNNPQVYT-ETPLHAAASLGAACSVSLLLHYGADVRVQSAEAPINAKNSRGQTPLHLAALAQSADTMESLIVAGXXXXAEDDDGRTP 374          
BLAST of mRNA_L-elsbetiae_contig14203.3129.1 vs. uniprot
Match: UPI001746FF7D (transient receptor potential cation channel protein painless n=1 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI001746FF7D)

HSP 1 Score: 55.1 bits (131), Expect = 1.440e-6
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    1 LHNATEHEQLVSMAALIRAGA-NPN--SGRPDNWETPLHMAVRYKHVKAARLLLRAGTVLSARNSKGWTALHIAAMVYSLDTVNLLLR 255
            +H ATE   + ++A L+     NPN  +GR    +T LH+AVR   +  A LLL+ G  ++  NSKG TALH+AA+    D V L+L 
Sbjct:  105 IHFATEGGHVDTLAVLLAEPTINPNLEAGR----QTALHIAVRRNDLMCADLLLKKGASINIPNSKGMTALHLAAIKSKRDMVKLILE 188          
BLAST of mRNA_L-elsbetiae_contig14203.3129.1 vs. uniprot
Match: A0A3L8DGE4_OOCBI (Ion_trans domain-containing protein n=4 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A3L8DGE4_OOCBI)

HSP 1 Score: 53.9 bits (128), Expect = 3.670e-6
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    1 LHNATEHEQLVSMAALIRAGANPNSGRPDNWETPLHMAVRYKHVKAARLLLRAGTVLSARNSKGWTALHIAAMVYSLDTVNLLLR 255
            +H ATE   + ++AAL+ A    N       +T LH+AVR K++  A LLL  G   S  +SKG TALH+AAM    D   L+L+
Sbjct:  117 IHFATEGGHVDALAALL-AELTINPNLEAGQQTALHIAVRKKNLACAGLLLDKGASASIPDSKGLTALHLAAMRGQRDMTELILQ 200          
BLAST of mRNA_L-elsbetiae_contig14203.3129.1 vs. uniprot
Match: UPI0005F05539 (transient receptor potential cation channel protein painless-like n=1 Tax=Wasmannia auropunctata TaxID=64793 RepID=UPI0005F05539)

HSP 1 Score: 53.1 bits (126), Expect = 6.830e-6
Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 1
Query:    1 LHNATEHEQLVSMAALIRAGANPNSGRPDNWETPLHMAVRYKHVKAARLLLRAGTVLSARNSKGWTALHIAAMVYSLDTVNLLLR 255
            +H ATE   + ++ AL++     N       +T LH+AVR   +  A LLL  G   S  NSKG TALH+AA+    D V L+L+
Sbjct:  103 IHFATEGGHVSTLEALLKESTT-NPDFEAGHQTALHIAVRRNDLTCAGLLLENGASASIPNSKGLTALHLAAVKGQRDMVKLILK 186          
BLAST of mRNA_L-elsbetiae_contig14203.3129.1 vs. uniprot
Match: A0A8B6CNR1_MYTGA (Uncharacterized protein (Fragment) n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6CNR1_MYTGA)

HSP 1 Score: 52.8 bits (125), Expect = 8.350e-6
Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:    1 LHNATEHEQLVSMAALIRAGANPNSGRPDNWETPLHMAVRYKHVKAARLLLRAGTVLSARNSKGWTALHIAAMVYSLDTVNLLLRYGALETDKGGIGETP 300
            LH A  + Q  +M  LIR GAN +     N ETPL +A   K+++ A +++R G  +   NS+G +ALH+AA     + V  L+  GA  + +   G+TP
Sbjct:  219 LHQAAYNGQNDTMKYLIRIGANTSVQNNKN-ETPLDLA---KNLEVAEIIIRNGDDV---NSRGDSALHVAASKLDSNAVKCLISLGANVSARNNEGQTP 311          
BLAST of mRNA_L-elsbetiae_contig14203.3129.1 vs. uniprot
Match: A0A4S2JVW8_9HYME (Ion_trans domain-containing protein n=1 Tax=Temnothorax longispinosus TaxID=300112 RepID=A0A4S2JVW8_9HYME)

HSP 1 Score: 52.8 bits (125), Expect = 9.600e-6
Identity = 36/86 (41.86%), Postives = 46/86 (53.49%), Query Frame = 1
Query:    1 LHNATEHEQLVSMAALIRAGA-NPNSGRPDNWETPLHMAVRYKHVKAARLLLRAGTVLSARNSKGWTALHIAAMVYSLDTVNLLLR 255
            +H ATE   + ++ AL+     NPN       +T LH+AVR   +  A LLL  G   S  NSKG TALH+AAM    D V L+L 
Sbjct:  508 IHFATEGGHVDTLLALLAEPTINPNIEAGQ--QTALHIAVRKNDLTCAGLLLENGASASIPNSKGLTALHLAAMKGQRDMVELILE 591          
BLAST of mRNA_L-elsbetiae_contig14203.3129.1 vs. uniprot
Match: F6X8J8_MONDO (Ubiquitin-like domain-containing protein n=2 Tax=Monodelphis domestica TaxID=13616 RepID=F6X8J8_MONDO)

HSP 1 Score: 52.4 bits (124), Expect = 1.100e-5
Identity = 30/65 (46.15%), Postives = 36/65 (55.38%), Query Frame = 1
Query:  103 LHMAVRYKHVKAARLLLRAGTVLSARNSKGWTALHIAAMVYSLDTVNLLLRYGALETDKGGIGET 297
            L++     H +A R LL  GT    R   G TALH AA    + T+NLLL YGAL +DK   GET
Sbjct:  119 LYITAHRGHSEALRFLLANGTNCQGRTPLGRTALHAAAATGQITTINLLLDYGALLSDKDFKGET 183          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14203.3129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4V6WK43_9PEZI1.200e-735.87Uncharacterized protein n=2 Tax=Friedmanniomyces e... [more]
E2AFM2_CAMFO1.630e-744.05Transient receptor potential cation channel protei... [more]
A0A0J7L592_LASNI1.630e-743.53Transient receptor potential cation channel protei... [more]
A0A8J5R244_9HYME1.370e-633.94Uncharacterized protein n=1 Tax=Cotesia typhae Tax... [more]
UPI001746FF7D1.440e-640.91transient receptor potential cation channel protei... [more]
A0A3L8DGE4_OOCBI3.670e-641.18Ion_trans domain-containing protein n=4 Tax=Oocera... [more]
UPI0005F055396.830e-638.82transient receptor potential cation channel protei... [more]
A0A8B6CNR1_MYTGA8.350e-636.00Uncharacterized protein (Fragment) n=1 Tax=Mytilus... [more]
A0A4S2JVW8_9HYME9.600e-641.86Ion_trans domain-containing protein n=1 Tax=Temnot... [more]
F6X8J8_MONDO1.100e-546.15Ubiquitin-like domain-containing protein n=2 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14203contigL-elsbetiae_contig14203:1072..1569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.2
Seed ortholog evalue2.6e-09
Seed eggNOG ortholog1158762.KB898039_gene1641
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ankyrin repeat
EggNOG OGs1RBYV@1224,1SE9G@1236,COG0666@1,COG0666@2
COG Functional cat.ET
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.48885-CDS-L-elsbetiae_contig14203:1071..12361622815566.48885-CDS-L-elsbetiae_contig14203:1071..1236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14203 1072..1236 +
1691682963.5079286-CDS-L-elsbetiae_contig14203:1071..12361691682963.5079286-CDS-L-elsbetiae_contig14203:1071..1236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14203 1072..1236 +
1622815566.5031283-CDS-L-elsbetiae_contig14203:1425..15691622815566.5031283-CDS-L-elsbetiae_contig14203:1425..1569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14203 1426..1569 +
1691682963.517115-CDS-L-elsbetiae_contig14203:1425..15691691682963.517115-CDS-L-elsbetiae_contig14203:1425..1569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14203 1426..1569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14203.3129.1prot_L-elsbetiae_contig14203.3129.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14203 1072..1569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14203.3129.1

>prot_L-elsbetiae_contig14203.3129.1 ID=prot_L-elsbetiae_contig14203.3129.1|Name=mRNA_L-elsbetiae_contig14203.3129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
LHNATEHEQLVSMAALIRAGANPNSGRPDNWETPLHMAVRYKHVKAARLL
LRAGTVLSARNSKGWTALHIAAMVYSLDTVNLLLRYGALETDKGGIGETP
FL*
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mRNA from alignment at L-elsbetiae_contig14203:1072..1569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14203.3129.1 ID=mRNA_L-elsbetiae_contig14203.3129.1|Name=mRNA_L-elsbetiae_contig14203.3129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig14203:1072..1569+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCACAATGCCACGGAGCACGAGCAGCTGGTGTCGATGGCGGCGTTGAT CCGAGCGGGCGCGAATCCAAACAGCGGCAGGCCGGATAACTGGGAAACGC CCCTTCACATGGCGGTGCGATACAAGCACGTGAAGGCCGCCAGGCTCCTC CTGCGTGCGGGCACGGTCGCGGACAAGAAAGACTACGACGGCATGACCCC GTTGCACTGCGCGGTCAGCAACGGCTACACGGAAATGGTGTCCGAGATGC TGAGCTGCATCAGGCGGCAAGACAACGGCCTCCTGTCTTATCAAGGGCAG CAGCAGCAGCAGCATCGCGGCGCCTGGGGTGCCGTGGGGCCCGGCATGCG CCAGGTGCTGTCTGCGCGCAACAGCAAGGGTTGGACAGCCCTACACATTG CCGCTATGGTCTACAGCCTGGATACCGTCAACCTGCTGCTTCGCTATGGA GCTCTCGAGACCGACAAGGGCGGGATCGGGGAGACGCCCTTTCTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14203:1072..1569+

>mRNA_L-elsbetiae_contig14203.3129.1 ID=mRNA_L-elsbetiae_contig14203.3129.1|Name=mRNA_L-elsbetiae_contig14203.3129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig14203:1072..1569+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCACAATGCCACGGAGCACGAGCAGCTGGTGTCGATGGCGGCGTTGAT
CCGAGCGGGCGCGAATCCAAACAGCGGCAGGCCGGATAACTGGGAAACGC
CCCTTCACATGGCGGTGCGATACAAGCACGTGAAGGCCGCCAGGCTCCTC
CTGCGTGCGGGCACGCTTCACAATGCCACGGAGCACGAGCAGCTGGTGTC
GATGGCGGCGTTGATCCGAGCGGGCGCGAATCCAAACAGCGGCAGGCCGG
ATAACTGGGAAACGCCCCTTCACATGGCGGTGCGATACAAGCACGTGAAG
GCCGCCAGGCTCCTCCTGCGTGCGGGCACGGTGCTGTCTGCGCGCAACAG
CAAGGGTTGGACAGCCCTACACATTGCCGCTATGGTCTACAGCCTGGATA
CCGTCAACCTGCTGCTTCGCTATGGAGCTCTCGAGACCGACAAGGGCGGG
ATCGGGGAGACGCCCTTTCTGTGAGTGCTGTCTGCGCGCAACAGCAAGGG
TTGGACAGCCCTACACATTGCCGCTATGGTCTACAGCCTGGATACCGTCA
ACCTGCTGCTTCGCTATGGAGCTCTCGAGACCGACAAGGGCGGGATCGGG
GAGACGCCCTTTCTGTGA
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