mRNA_L-elsbetiae_contig1420.3128.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1420.3128.1 vs. uniprot
Match: D7G8F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F0_ECTSI) HSP 1 Score: 564 bits (1453), Expect = 2.120e-192 Identity = 333/482 (69.09%), Postives = 374/482 (77.59%), Query Frame = 1 Query: 754 SRSRPSLVGLRALTASAAAGNEPDIRDGDNEXXXXXXXXXXXXG----ISGRIGALQMFVSLVRWVLTGGRAGTRRREQATAAVVARVGAASEARRRDSLQIFFHLFQWMWWPFAALQGGIADSSSRGGRAWKKHGRRPKATGGRGGRAPPPIQRAMLRPTLSAQQVQRAYARPQSTAYPRP--------KVSAPTLLELEVEDTVEALPPREQRLALEAAGKDARASPAPSRDPLWTRFLVWFFERVITSRAVMVEGLQISGGARINITGLDLKVMTLLWKRFGSFKKPFEIEGSYVLTSEDLANSAMVRRLVTNMMNSTLRKLEALATEPLRNSGITIKQVTAKRSRLVIEGEMSYDTAKVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLRKRAAFRYDVAERLSVTFGNLVQNMKILRLQFKPNQA 2163 SRSRPSLVGLRAL +A +EPD XXXXXXXXXXX +S + A Q +SLVRWVLT GR+G +R+EQA A A A +RRD LQ LFQWMW PFA L+GG + + GGRA K RRP+ATG P QRAML+P L+ QQ+Q Y RPQST KVS P+LL LE ++ +E LPP ++R+A+E A + A ++DPLW++ LVW FER IT+RA++VEGL+ISGGAR+NIT LDLKVMTLLWKRFGSFKKPFEIEGSYVLTSEDL+ S+MVRRLVTNMMNSTLRKLE LATEPLR S ITI QV AKRSRLVIEGEM+YD+AKVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLRKRAAFR+DVAERLSVTFGNLVQN+KI LQ +PNQA Sbjct: 56 SRSRPSLVGLRALATGSAGSSEPDRSXXXXXXXXXXXXXXXXSAAAVIVSTPVAAFQALLSLVRWVLTAGRSGMKRQEQAVATGAA---AMERGQRRDGLQ----LFQWMWRPFAVLEGGSVANRNSGGRASKY--RRPQATG-------VPKQRAMLQP-LTTQQLQSRYPRPQSTXXXXXXXXXXXXXKVSPPSLLNLEADEPMEILPPLKERMAMEKADVER----AVTKDPLWSKILVWVFERAITNRAMLVEGLEISGGARMNITNLDLKVMTLLWKRFGSFKKPFEIEGSYVLTSEDLSTSSMVRRLVTNMMNSTLRKLETLATEPLRKSSITITQVLAKRSRLVIEGEMAYDSAKVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLRKRAAFRFDVAERLSVTFGNLVQNIKIFGLQVRPNQA 516
BLAST of mRNA_L-elsbetiae_contig1420.3128.1 vs. uniprot
Match: A0A6H5K8F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F0_9PHAE) HSP 1 Score: 541 bits (1395), Expect = 5.810e-180 Identity = 389/770 (50.52%), Postives = 443/770 (57.53%), Query Frame = 1 Query: 10 LMHVMGILQLSAACARAVAVAGAVLSSTAAARVAANGHDGTTAAGXXXXAGPGLS----SGRSFAFASRGSRKDERPGRLGRTAAGFRSVGRVSGCAS-----VTR--IRVILAARTHLSGPYLRRSGVSRPGRPPSRTTATAAAFVLPLGPA-SHRCCY-SGSRH---QGSGGSGIAYSRRCRPSPSPRIRPSWHSSFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSSLSRPGSFGSGAVDSLLSRSRPSLVGLRALTASAAAGNEPD-IRDGDNEXXXXXXXXXXXXG---ISGRIGALQMFVSLVRWVLTGGRAGTRRREQATAAVVARVGAASEARRRDSLQIFFHLFQWMWWPFAALQGGIADSSSRGGRAWKKHGRRPKATGGRGGRAPPPIQRAMLRPTLSAQQVQRAYARPQSTAYPRPKVSAPTLLELEVEDTVEALPPREQRLALEAAGKDARASPAPSRDPLWTRFLVWFFERVITSRAVMVEGL--------------------------------QISGGARINITGLDLKVMTLLWKRFGSFKKPFEIEGSYVLTSEDLANSAMVRRLVTNMMNSTLRKLEALATEPLRNSGITIKQVTAKRSRLVIEGEMSYDTAKVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLRKRAAFRYDVAERLSVTFGNLVQNMKILRLQFKPNQA 2163 LM V+GIL LSA CARAVAVAGAVLS TA A XXXX S +G+SF R E +++G + AS TR +R R SG R+S VSR AFV PLGP+ S CC+ RH +G S R R S RI P+ ++FS S L PGS+ SGA D SRSRPSL+GLRAL AA G EPD RD D +S + A Q +SLVRWVLT GR+G +R+EQA A A A RRRD LQ LFQWMW PFA L+GG S + GG+A K RRP+ATG KVS P+LL LE ++ +E LPP ++R+A+E G + A ++DPLW++ LVW ER IT+RA++VEGL QISGGAR+NIT LDLKVMTLLWKRFGSFKKPFEIEGSYVLTSEDL+ S++VRRLVTNMMNSTLRKLE LATEPLR S ITI QV+AKRSRLVIEGEM+YD+AKVPFTYRTSIGVKGKGHVVYLKDAEVFWEN+GGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVAS+RKRAAFR+DVAERLSVTFGNLVQNMKIL LQ +PNQA Sbjct: 31 LMQVVGILHLSAVCARAVAVAGAVLSPTAGAXXXXXXXXXXXXXXXXXXXXXXXSVATAAGKSFTDVRTEERAQEARKAFVSSSSGSSXXXXXNSPASGRSRTATRPLLRTTSITREVYSGDRRRKSRVSR---------VATGAFVAPLGPSLSRSCCHRQQQRHPLPRGXXXXXXXXSVR-RSRCSSRIAPAKPTTFSCGAVSEAGGADACVVAPSQKRPWSMSAAAAAVAAAEAMASLAGRVSSPLPSPGSY-SGAGD-FFSRSRPSLIGLRALATGAAGGIEPDRSRDRDRSNGSGGDDSGRSAAAVIVSTPVAAFQALLSLVRWVLTAGRSGMKRQEQAAATGAA---AMERGRRRDGLQ----LFQWMWRPFAGLEGGSVASRNSGGQASKY--RRPQATGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVSPPSLLNLEADEPMEVLPPLKERMAMEETGVER----AVTKDPLWSKILVWVLERAITNRAMLVEGLEVSVDARSNREAMSGLLQSVGITFNHLELENLQISGGARMNITNLDLKVMTLLWKRFGSFKKPFEIEGSYVLTSEDLSTSSIVRRLVTNMMNSTLRKLETLATEPLRKSSITITQVSAKRSRLVIEGEMAYDSAKVPFTYRTSIGVKGKGHVVYLKDAEVFWENIGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASVRKRAAFRFDVAERLSVTFGNLVQNMKILGLQVRPNQA 775
BLAST of mRNA_L-elsbetiae_contig1420.3128.1 vs. uniprot
Match: A0A4D9D3X5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3X5_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.100e-31 Identity = 80/216 (37.04%), Postives = 127/216 (58.80%), Query Frame = 1 Query: 1477 VMVEGLQISGGARINITGLDLKVMTLLW-KRFGSFKKPFEIEGSYVLTSEDLANSAMVRRLVTNMMNSTLRKLEALATEPLRNSGITIKQVTAKRSRLVIEG--EMSYDTAKVPFTYRTSIGVKGKGHVVYLKDAE-VFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQ-VALKARVVISPFPPLLVASLRKRAAFRYDVAERLSVTFG 2109 +++E LQISGG R+ ITGL+++++ LL +R +KPFE+ G YVLT +D++ S ++R +V ++N+ LR L + I +++ +R +L + G ++ + +PFT T +G+ G GH+VYL D E V + +PL + FDVD+G+ ARIE + I + V + AR +I+P PP V + KRAAF YD+ S FG Sbjct: 57 IVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVRISPRR-KLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPKAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFG 271
BLAST of mRNA_L-elsbetiae_contig1420.3128.1 vs. uniprot
Match: W7TXL0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXL0_9STRA) HSP 1 Score: 135 bits (339), Expect = 7.980e-31 Identity = 80/216 (37.04%), Postives = 127/216 (58.80%), Query Frame = 1 Query: 1477 VMVEGLQISGGARINITGLDLKVMTLLW-KRFGSFKKPFEIEGSYVLTSEDLANSAMVRRLVTNMMNSTLRKLEALATEPLRNSGITIKQVTAKRSRLVIEG--EMSYDTAKVPFTYRTSIGVKGKGHVVYLKDAE-VFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQ-VALKARVVISPFPPLLVASLRKRAAFRYDVAERLSVTFG 2109 +++E LQISGG R+ ITGL+++++ LL +R +KPFE+ G YVLT +D++ S ++R +V ++N+ LR L + I +++ +R +L + G ++ + +PFT T +G+ G GH+VYL D E V + +PL + FDVD+G+ ARIE + I + V + AR +I+P PP V + KRAAF YD+ S FG Sbjct: 148 IVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVRISPRR-KLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFG 362
BLAST of mRNA_L-elsbetiae_contig1420.3128.1 vs. uniprot
Match: A0A835YIN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIN5_9STRA) HSP 1 Score: 127 bits (318), Expect = 4.830e-28 Identity = 84/281 (29.89%), Postives = 132/281 (46.98%), Query Frame = 1 Query: 1408 PSRD---PLWTRFLVWFFERVITSRAVMVEGL--------------------------------QISGGARINITGLDLKVMTLLWKRFGSFKKPFEIEGSYVLTSEDLANSAMVRRLVTNMMNSTLRKLEALATEPLRNSGITIKQVTAKRSRLVIEGEMSYDTAKVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGSLSLPL-------LPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLRKRAAFRYDVAERLSVTFGNLVQN 2124 PS D P+ + L W ++I RA+ VEGL QI+GGA + +TG+DLK++ L+ +R G+FKKPF++ G +V TS D S +R +V ++ ++ L A + + +V+ K R+VI+ S F+ ++ GHVV L+ + N G LP + DMG+ RIE++ I NG+ L+ V++P PPL+VA + KR RYDV ER+S +++ N Sbjct: 96 PSDDAPIPVTGKALSWMLAQIIYKRALRVEGLDLLVQAASNRKALSGNLKTVWCKFRTLALPAIQITGGANMVVTGVDLKMLLLMHRRLGAFKKPFQVRGEWVFTSNDFVASNAIRNMVQAILTASFNALSLGA--------VRVTRVSIKGDRIVIDARSS---VLQRFSCSANLATSSDGHVVSLRSLR--YSNQAGEFLFQTPWQLAATLPRDLVSCDMGDNTRIEALTIRNGRATLRGCFVVTPTPPLIVADVGKRGMVRYDVGERISAIVSDVLDN 363
BLAST of mRNA_L-elsbetiae_contig1420.3128.1 vs. uniprot
Match: A0A836CBR5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBR5_9STRA) HSP 1 Score: 117 bits (294), Expect = 4.810e-26 Identity = 68/226 (30.09%), Postives = 120/226 (53.10%), Query Frame = 1 Query: 1462 ITSRAVMVEGLQISGGARINITGLDLKVMTLLWKRFGSFKKPFEIEGSYVLTSEDLANSAMVRRLVTNMMNSTLRKLEALATEPLRNSGITIKQVTAKRSRLVIEGEMSYDTAKVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGSLSLPL-------LPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLRKRAAFRYDVAERLSVTFGNLV 2118 I + + + +QI+GGA + +TG+DLK++ L+ +R G+FKKPF++ G + T+ D S +R +V N++ ++ +L P+R + +V+ R++ EG + F+ ++ GHV+ L+ + + N G LP + DMG+ RIE++ I NG++ ++ V++P PPL+VA + KR RYDV ERLS ++ Sbjct: 21 INFKTLALPQMQITGGASMVVTGVDLKMLYLMHRRLGAFKKPFQVRGEWSFTNNDFIASPAIRNMVQNILAASFARLNL---GPVR-----VSRVSISGDRILFEG---HSDILQRFSCSANLATSQDGHVISLRSLK--YGNQAGEYLFQTPWQVAATLPKDLVSCDMGDNTRIEALSIRNGRLTVRGMFVVTPTPPLIVADVGKRGMVRYDVGERLSALVSEVL 233
BLAST of mRNA_L-elsbetiae_contig1420.3128.1 vs. uniprot
Match: D8LB91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB91_ECTSI) HSP 1 Score: 108 bits (270), Expect = 4.940e-22 Identity = 77/260 (29.62%), Postives = 117/260 (45.00%), Query Frame = 1 Query: 1486 EGLQISGGARINITGLDLKVMTLL---WKRFGSFKKPFEIEGSYVLTSEDLANSAMVRRLVTNMMNSTLR---KLEALATEPLR------------------------------------------NSGITIKQVTAKRSRLVIEGEMSYDTA--KVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLR-KRAAFRYDVAERLSVTFGN 2112 E +Q+SGGA + G+D+ + LL W+R ++P E G T D+A S +RRL ++N LR K A+A +++ V ++L IEGEM+ +VPF Y S+ GHV+Y K + V+W GG + LP++PL++F +D+G+ ARIE +RI G ++L R +++ P VA KR YD+AE LS N Sbjct: 73 EDIQVSGGA-FELLGVDVLTLGLLPGPWRRLRRLRRPCEAIGRSTFTDVDVAYSPAIRRLAQRVVNHALRPRAKRAAVAXXXXXXXXXXXXXXXXXXXXLPXXXXXXXXXXXXXXXXXSEQQQGGLEPSVSVLGVRVHGNKLAIEGEMTNGGTFLRVPFRYHFSLSASADGHVLYFKGSSVYWGTPGGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSLGGRFILTNTPGFTVALPGLKRGDINYDLAESLSRLVSN 331
BLAST of mRNA_L-elsbetiae_contig1420.3128.1 vs. uniprot
Match: A0A0G4EGC3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EGC3_VITBC) HSP 1 Score: 109 bits (273), Expect = 1.790e-21 Identity = 80/223 (35.87%), Postives = 115/223 (51.57%), Query Frame = 1 Query: 1462 ITSRAVMVEGLQISGGARINITGLDLKVMTLLWKRFGSFKKPFEIEGSYVLTSEDLANSAMVRRLVTNMMNSTLRKLEALATEPLRNSG----ITIKQVTAKRSRLVIEG-EMSYDTAKVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGSLSLPL-LPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLRK--RAAFRYDVAERLSVTF 2106 I R + + L ISGGA + I L ++ +LL +R + PFE G+Y LTSEDL +S + RL+ + N L K+E T RN +TI+ VT K RL I G + PF RT +GV GHVVYL+D V VG + + + LE++ +DMG+ I+++ + ++ L AR +S P V + RAAF D+A LS F Sbjct: 293 IRFRKLAFQALSISGGAEVEIRELAIRWGSLLLRRQTFLRGPFETFGTYTLTSEDLEDSPFINRLLRQLANKLLSKMEG--TWDGRNIPKLMLVTIEHVTVKDGRLCITGIAHTVLNTMTPFRIRTGVGVTSNGHVVYLRDTVVTL-GVGTPWEVAVNVRLESWTLDMGDNVEIDTLVLAKNKITLVARCQLSSVEPFQVVPPQSSDRAAFSIDLARLLSKFF 512
BLAST of mRNA_L-elsbetiae_contig1420.3128.1 vs. uniprot
Match: A0A6H5K9J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J0_9PHAE) HSP 1 Score: 105 bits (262), Expect = 1.890e-20 Identity = 73/255 (28.63%), Postives = 115/255 (45.10%), Query Frame = 1 Query: 1486 EGLQISGGARINITGLDLKVMTLL---WKRFGSFKKPFEIEGSYVLTSEDLANSAMVRRLVTNMMNSTLRKLEALA----------------------------------------TEPLRNSGITIKQVTAKRSRLVIEGEMSYDTA--KVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLR-KRAAFRYDVAERLSVTFGN 2112 E +Q+SGGA + G+D+ + LL W+R ++P E G T D+A S +RRL ++N L+ A + +++ V ++L IEGEM+ +VPF Y S+ GHV+Y K + V+W GG + LP++PL++F +D+G+ ARIE +RI G +++ R +++ P VA KR YD+AE LS N Sbjct: 169 EDIQVSGGA-FELLGVDVLTLGLLPGPWRRLRRLRRPCEAIGRSTFTDVDVAYSPAIRRLAQRVVNHALQPRAKRAGVVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSAQQQGRLEPSVSVLGVRVHGNKLAIEGEMTNGGTFLRVPFRYHFSLSASQDGHVLYFKGSSVYWGTPGGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSVGGRFILTNTPGFTVALPGLKRGDINYDLAEGLSRLVSN 422 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1420.3128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1420.3128.1 >prot_L-elsbetiae_contig1420.3128.1 ID=prot_L-elsbetiae_contig1420.3128.1|Name=mRNA_L-elsbetiae_contig1420.3128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=718bp MHVMGILQLSAACARAVAVAGAVLSSTAAARVAANGHDGTTAAGGGAAAGback to top mRNA from alignment at L-elsbetiae_contig1420:18082..24719+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1420.3128.1 ID=mRNA_L-elsbetiae_contig1420.3128.1|Name=mRNA_L-elsbetiae_contig1420.3128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6638bp|location=Sequence derived from alignment at L-elsbetiae_contig1420:18082..24719+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1420:18082..24719+ >mRNA_L-elsbetiae_contig1420.3128.1 ID=mRNA_L-elsbetiae_contig1420.3128.1|Name=mRNA_L-elsbetiae_contig1420.3128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4308bp|location=Sequence derived from alignment at L-elsbetiae_contig1420:18082..24719+ (Laminarionema elsbetiae ELsaHSoW15)back to top |