mRNA_L-elsbetiae_contig14197.3118.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14197.3118.1
Unique NamemRNA_L-elsbetiae_contig14197.3118.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14197.3118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14197contigL-elsbetiae_contig14197:22..773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size752
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14197.3118.1prot_L-elsbetiae_contig14197.3118.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14197 240..683 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.36158-UTR-L-elsbetiae_contig14197:21..2391622815565.36158-UTR-L-elsbetiae_contig14197:21..239Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14197 22..239 +
1691682962.736785-UTR-L-elsbetiae_contig14197:21..2391691682962.736785-UTR-L-elsbetiae_contig14197:21..239Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14197 22..239 +
1622815565.3851893-UTR-L-elsbetiae_contig14197:683..7731622815565.3851893-UTR-L-elsbetiae_contig14197:683..773Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14197 684..773 +
1691682962.7609491-UTR-L-elsbetiae_contig14197:683..7731691682962.7609491-UTR-L-elsbetiae_contig14197:683..773Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14197 684..773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.3738253-CDS-L-elsbetiae_contig14197:239..6831622815565.3738253-CDS-L-elsbetiae_contig14197:239..683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14197 240..683 +
1691682962.7497506-CDS-L-elsbetiae_contig14197:239..6831691682962.7497506-CDS-L-elsbetiae_contig14197:239..683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14197 240..683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14197.3118.1

>prot_L-elsbetiae_contig14197.3118.1 ID=prot_L-elsbetiae_contig14197.3118.1|Name=mRNA_L-elsbetiae_contig14197.3118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
MSVDAACCEKTTRIVYLYCSFVCALFLWMEREARRAILLLLCNLLLFEVV
GFRTSWKKKSHAEVVKGGREAGYVMGYCTSLFSPFNMWLMFRAECFVCAL
NLAFPLHTPEICGPTRPRLYTIHAALTRSSMYITSKSKCPLSNLQLI*
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mRNA from alignment at L-elsbetiae_contig14197:22..773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14197.3118.1 ID=mRNA_L-elsbetiae_contig14197.3118.1|Name=mRNA_L-elsbetiae_contig14197.3118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=752bp|location=Sequence derived from alignment at L-elsbetiae_contig14197:22..773+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCTCCTGCGGTGCCTGCCTAGTTTTTTTTTATCGCGAGCAGGGTTCA
GCACTCCCCACCCTCGTCAACAATGAAGTCGAAGTAGTATTTACTCACGA
AATATGTACATTTGTGTTTCGCAGTTTTGTGTTTGTCGTCTCCAACCGTC
ACCTCATATTTTTGCCCGGACTGTGTTGTTAGCCGCCTGAAGGGTAGGTG
AGTGATAAAATCATTTAGATGAGTGTAGACGCAGCCTGCTGCGAAAAAAC
GACACGTATTGTATATCTATACTGTAGCTTTGTTTGTGCCCTATTTTTAT
GGATGGAGCGCGAAGCAAGGCGGGCGATATTACTGTTGCTGTGTAACCTT
CTACTTTTTGAAGTTGTCGGGTTTCGAACAAGTTGGAAGAAAAAGTCACA
CGCTGAAGTTGTCAAGGGAGGTCGAGAAGCTGGGTATGTAATGGGGTACT
GTACGTCGTTATTTTCACCGTTCAACATGTGGTTGATGTTTCGTGCGGAA
TGCTTCGTGTGTGCACTTAACCTTGCGTTTCCGTTACATACGCCTGAAAT
TTGCGGTCCAACCAGACCCAGACTCTATACCATACACGCAGCCCTAACCC
GATCTTCCATGTACATAACCTCAAAATCTAAATGTCCCCTTTCTAATCTT
CAACTTATTTGACCTCTTTAATATACATGTACATAATCTTTTTTATTTAT
TTATTTCATTTTTTTTAATTTAGTACGAGGGGCCCGTGACCCCACACAAG
AC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14197:22..773+

>mRNA_L-elsbetiae_contig14197.3118.1 ID=mRNA_L-elsbetiae_contig14197.3118.1|Name=mRNA_L-elsbetiae_contig14197.3118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig14197:22..773+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTGTAGACGCAGCCTGCTGCGAAAAAACGACACGTATTGTATATCT
ATACTGTAGCTTTGTTTGTGCCCTATTTTTATGGATGGAGCGCGAAGCAA
GGCGGGCGATATTACTGTTGCTGTGTAACCTTCTACTTTTTGAAGTTGTC
GGGTTTCGAACAAGTTGGAAGAAAAAGTCACACGCTGAAGTTGTCAAGGG
AGGTCGAGAAGCTGGGTATGTAATGGGGTACTGTACGTCGTTATTTTCAC
CGTTCAACATGTGGTTGATGTTTCGTGCGGAATGCTTCGTGTGTGCACTT
AACCTTGCGTTTCCGTTACATACGCCTGAAATTTGCGGTCCAACCAGACC
CAGACTCTATACCATACACGCAGCCCTAACCCGATCTTCCATGTACATAA
CCTCAAAATCTAAATGTCCCCTTTCTAATCTTCAACTTATTTGAATGAGT
GTAGACGCAGCCTGCTGCGAAAAAACGACACGTATTGTATATCTATACTG
TAGCTTTGTTTGTGCCCTATTTTTATGGATGGAGCGCGAAGCAAGGCGGG
CGATATTACTGTTGCTGTGTAACCTTCTACTTTTTGAAGTTGTCGGGTTT
CGAACAAGTTGGAAGAAAAAGTCACACGCTGAAGTTGTCAAGGGAGGTCG
AGAAGCTGGGTATGTAATGGGGTACTGTACGTCGTTATTTTCACCGTTCA
ACATGTGGTTGATGTTTCGTGCGGAATGCTTCGTGTGTGCACTTAACCTT
GCGTTTCCGTTACATACGCCTGAAATTTGCGGTCCAACCAGACCCAGACT
CTATACCATACACGCAGCCCTAACCCGATCTTCCATGTACATAACCTCAA
AATCTAAATGTCCCCTTTCTAATCTTCAACTTATTTGA
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