mRNA_L-elsbetiae_contig14195.3117.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14195.3117.1
Unique NamemRNA_L-elsbetiae_contig14195.3117.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14195.3117.1 vs. uniprot
Match: D7FLU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU1_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 3.220e-82
Identity = 136/194 (70.10%), Postives = 156/194 (80.41%), Query Frame = 1 
Query:    1 QVALIYKDIRDWWEQTLFLYKTGKLSYTYWRGFERYDQAWGLSTKYTEAVAKVSKEALELDRQYKIRQKTLRAGKRLTKLSRQVGSSAAKEVTTFASSATGWGSDQLREWGLLGDDPAAVDRGSPGLFGGLLKSKKGLAGGARGSGGAKRRRPLGFSVLLDGVFGERSRSIYSAPPAGGSRKPGYRGDPVIPVR 582
            QVAL+YKD+RDWWEQT+FLYKTGKLSYTYWRGFERYDQAWGLS KYTE VAKVSKEALELDRQYKIRQKTLRAGKRLT++SRQVGSSA +EVTT A SA+ WG ++LR+WGL+GDD     R        +LK KK   GGA+        RPLG SV+LDG+FGERSRS+YSAPPAGG+R   ++ DP+IP R
Sbjct:  220 QVALMYKDVRDWWEQTVFLYKTGKLSYTYWRGFERYDQAWGLSAKYTETVAKVSKEALELDRQYKIRQKTLRAGKRLTRISRQVGSSAKREVTTLAGSASDWGGNKLRKWGLMGDD--LDPRRKRTKLTEILKLKKSKVGGAK--------RPLGVSVVLDGMFGERSRSMYSAPPAGGTRIKTHKADPIIPAR 403
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BLAST of mRNA_L-elsbetiae_contig14195.3117.1 vs. uniprot
Match: A0A6H5KZI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI1_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 1.350e-79
Identity = 137/194 (70.62%), Postives = 156/194 (80.41%), Query Frame = 1 
Query:    1 QVALIYKDIRDWWEQTLFLYKTGKLSYTYWRGFERYDQAWGLSTKYTEAVAKVSKEALELDRQYKIRQKTLRAGKRLTKLSRQVGSSAAKEVTTFASSATGWGSDQLREWGLLGDDPAAVDRGSPGLFGGLLKSKKGLAGGARGSGGAKRRRPLGFSVLLDGVFGERSRSIYSAPPAGGSRKPGYRGDPVIPVR 582
            QVAL+YKD+RDWWEQT+FLYKTGKLSYTYWR FERYDQAWGLS KYTE VAKVSKEALELDRQYKIRQKTLRAGKR+T++SRQVGSSA +EVTT A + + WG ++LR+WGL+GDD     R        LLK KK      RG GGAKR  PLG SV+LDG+FGERSRS+YSAPPAGG+R   Y+ DP+IP R
Sbjct:  361 QVALMYKDVRDWWEQTVFLYKTGKLSYTYWRVFERYDQAWGLSAKYTETVAKVSKEALELDRQYKIRQKTLRAGKRITRISRQVGSSAKQEVTTLAGTVSDWGGNKLRKWGLMGDD--LDPRRKRNKLTELLKLKK------RGDGGAKR--PLGVSVVLDGMFGERSRSMYSAPPAGGTRIKTYKADPLIPAR 544
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BLAST of mRNA_L-elsbetiae_contig14195.3117.1 vs. uniprot
Match: A0A836CAQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAQ6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.190e-18
Identity = 48/100 (48.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:    1 QVALIYKDIRDWWEQTLFLYKTGKLSYTYWRGFERYDQAWGLSTKYTEAVAKVSKEALELDRQYKIRQKTLRAGKRLTKLSRQVGSSAAKEVTTFASSAT 300
            +VAL+YKDI+D+++QT+FLYKTGKLSY YW  ++ YD+ + L+ KY   +A+VSKEA E+DRQYKIR K L      ++  R +G +A +       +AT
Sbjct:  149 KVALVYKDIKDFYDQTVFLYKTGKLSYQYWSMWDDYDRRFQLTAKYNGFMARVSKEAYEIDRQYKIRNKALGIWGSTSRSVRVIGGAAGEGALKVLRNAT 248
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BLAST of mRNA_L-elsbetiae_contig14195.3117.1 vs. uniprot
Match: A0A7S3YL52_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YL52_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 5.310e-6
Identity = 31/94 (32.98%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:    4 VALIYKDIRDWWEQTLFLYKTGKLSYTYWRGFERYDQAWGLSTKYTEAVAKVSKEALELDRQYKIRQKTLRAGKRLTKLSRQVGSSAAKEVTTF 285
            VAL Y D+  +++ T++LYKTG L  TY++ FE  D+ + +  KY  AVA++  E  ++DR++ I +K+    + L   +R       K++ T+
Sbjct:  103 VALRYIDVAKFYQDTVYLYKTGVLGATYYKKFEELDKQYKIVDKYESAVARIQGEYAKVDREFDITEKS----RNLIVWARGAADDTMKQIQTY 192
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14195.3117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FLU1_ECTSI3.220e-8270.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZI1_9PHAE1.350e-7970.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAQ6_9STRA1.190e-1848.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3YL52_HETAK5.310e-632.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14195contigL-elsbetiae_contig14195:972..4404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001260.1
Exons3
Model size606
Cds size606
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14195.3117.1prot_L-elsbetiae_contig14195.3117.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14195 972..4404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.302007-CDS-L-elsbetiae_contig14195:971..10381622815565.302007-CDS-L-elsbetiae_contig14195:971..1038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14195 972..1038 +
1691682962.6995795-CDS-L-elsbetiae_contig14195:971..10381691682962.6995795-CDS-L-elsbetiae_contig14195:971..1038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14195 972..1038 +
1622815565.314339-CDS-L-elsbetiae_contig14195:3124..32721622815565.314339-CDS-L-elsbetiae_contig14195:3124..3272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14195 3125..3272 +
1691682962.7169232-CDS-L-elsbetiae_contig14195:3124..32721691682962.7169232-CDS-L-elsbetiae_contig14195:3124..3272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14195 3125..3272 +
1622815565.3271034-CDS-L-elsbetiae_contig14195:4013..44041622815565.3271034-CDS-L-elsbetiae_contig14195:4013..4404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14195 4014..4404 +
1691682962.7274177-CDS-L-elsbetiae_contig14195:4013..44041691682962.7274177-CDS-L-elsbetiae_contig14195:4013..4404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14195 4014..4404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14195.3117.1

>prot_L-elsbetiae_contig14195.3117.1 ID=prot_L-elsbetiae_contig14195.3117.1|Name=mRNA_L-elsbetiae_contig14195.3117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=202bp
QVALIYKDIRDWWEQTLFLYKTGKLSYTYWRGFERYDQAWGLSTKYTEAV
AKVSKEALELDRQYKIRQKTLRAGKRLTKLSRQVGSSAAKEVTTFASSAT
GWGSDQLREWGLLGDDPAAVDRGSPGLFGGLLKSKKGLAGGARGSGGAKR
RRPLGFSVLLDGVFGERSRSIYSAPPAGGSRKPGYRGDPVIPVREKRRSK
G*
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mRNA from alignment at L-elsbetiae_contig14195:972..4404+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14195.3117.1 ID=mRNA_L-elsbetiae_contig14195.3117.1|Name=mRNA_L-elsbetiae_contig14195.3117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3433bp|location=Sequence derived from alignment at L-elsbetiae_contig14195:972..4404+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGCCTTGATCTACAAAGATATCCGGGACTGGTGGGAGCAGACCCT
ATTCCTCTACAAAACCGGTGAGTCCAGAAGACGAGAGGTAGAAAGAGCGG
CGCAGCATGCGCCCTTCAGCGCTTTTTACGGCGGGGTAGAACAGGGGTGC
ACCCAGCTGTGTGCATCGTCGGCCGAGTTTTTTTTGTTCTGTTGGTGGTA
TGTAACGCTTCATGAAGAGGAACATAGGCAAGCGTGAGAACCAAAAAGAG
GGGCAACTCGGACCCCCACACTAGCCAGGCACGTAGTGTAGTCGACCGCA
GTCGTCACCGTGCCCCTTGTCCCACCCATAAGCCAGACCTCCACCCACCC
CGAGTTCCGGGCTGCTCAAGCTTGCCTTTCAACCCCCTGGCACACCTGGT
CCTGGAAGGTTAACTCGGAGGGCAGTGGCAGCAGTAAGTTTTCCTAAAAA
GCTGTTTGGGGCGGGCGGCAGCTTTACTTTAGGAGGGGAGGGCGCCGCGT
GTTAATTTGCCTGTCCGCGGGATTGTTTGAAAGCGCCGAGGACTGGGAGA
CATACATTGCCAACGGCGGTAGGGGTCACGTGACTGGGTGGGTGGCCGCA
CGGACGGAATTTTTCATGAGAACGGGAAAGGGTTTCCGTGTTGTGTAGGC
GCGCCTTTACGTGCGGGGGCTCGCTGCACGTATATATGTACGTACTGCAT
CGCTGGGAAGGATGGAGGATTGGTGCGGCGGGGCGCCCCTTGCACCGACT
GAGTACATTGTGTCGATGTACATATATCATATATTTATGTAGATAGCTCT
AAATAATCATTTATTTTTGGTCCAAAGGTTAAATGTATTGGTGTGAAACT
TATAGAATATTCTGAAAAAAGTTCCCGCAATATTTTTATAAGCCAAGGGA
ATATATGTAAATATATAAAGGCACGTATAAAAACAAGCGCTAACTATTAA
AAGGTTGAATGTCGCTTCAGCTTCATAAAGACAAAGACCTGGTCGTAAAA
AAAGATATATGTACTTGTAGTTGTGTAAGGGTCACAATAAGATTAAAGCT
AAAACTTAGAATATTGCCTTTTATTTTCACCCTCTCCGGTCTTGGCGTTT
TTACACGACGCGCTTGTGTGCCTATCTATGTCTGTCTAGAAGCCAGCTCT
CTGCTTTCTATTACACCATTACACCTGGTTTCCTTCGTCACCGCGTCGAA
GCTTCGAAGCTCGCATTGCGTGTAAATACAACACCCTGGAGATGGAGATG
GAGATGGAGATGTTTTTTTTTTGTTTTAACTTCACGTTAATTTTCAATGC
TCGACGGGGGCATCTTGCCACAAGGGCATCTTGCCAGAGTACTGAACCGT
GGTCGCACAGATGGTGGGCGTTTTTTTTTGTCGGGAGTAAATGTAAATAT
TCTTGAGCCTGTGCGCACTCTTTGTTGCGGTCTGTGGCTGCCCAAGCTGG
TTTGGCACTGAAGACGTCGCTATTTAGCCCTCACCTACCTCGCCCCCAAT
ACAACGGAAAACAAGCTAGCGAAGCTGTCGTCTGCGCGCAAGTTACGGAT
GTAAACAATGTCCCAGTCAATGTGCGTCCAACCTGTCAAAAAAAGTGCGA
AAAAAGAAGTTCCAAGGGTCACCTAGTACAAATCTGGCCATTTCGGCCGT
TTCTTTATCGCCGCACGACCACTGCAAGAACAGGCCTCACATGCGCTACA
TATTTCATATTTTTGTATCTATCCGTGGATGTAAGCTTTTATTTTATTGT
TTTTTAATGTGAAACGCCTTTCAGCAAGTAATTTGTTCCTCTCATTTGTG
TTCGCCCGCTGAGGCTGCTTGCTGCATGGGTTCTGACGGGCCATCCAACC
CGCTAGCGCGGTCGATGCTTCTCTTCTTCCTCAACTACCGTAGGTGACAC
AAGATACCACACCCCCTGGACAGGTTTTCAAAGCTCGATTTCTCCCCAGC
AAGAAGAGTGTCAGCGCCGAAAGGGGGCGGCGTTTGATGTGTCTAGTCGA
GCGCTGTCCGAAAATGTGTCGTTTGGTGCTGGCGCCCTCTTCGTTGCGGA
GTAATGGAGCTCTAAAATTCGGTCCAAGGGGTGTGGTATCTTGTGTCACC
TACGGTAAATACTACAACTACTGCTGTTGTTAACGAATGGAATGGACCAC
CAGGGAAGCTATCGTACACGTACTGGCGGGGCTTTGAGCGGTACGACCAA
GCCTGGGGGCTGTCCACAAAGTACACCGAAGCGGTTGCCAAGGTGTCCAA
GGAGGCCCTGGAGCTGGACCGCCAGTACAAGATTCGACAAAAGACCTTGA
GGTATTCATTTTTCCGTGTAATTTATTACAGAGTACGAAGGATCTAGTGT
TGTGAATGCGGTAAAATTTGGGGGGGCGGGCGGGGGGATACGCCGTAGGA
TCGTGATAGCTCTTCGTAAACGCATTTTTGTTGTAACCTATGTACGTAAA
ACAGCCATCGCTTTCAAGTCAGAGGTGGGTCGGTACGAGGCAGCCGAGAC
GGGACGAATACAAGCGGCAGTTTTGGTAAAAATGGCGCGGGTTAGGAGAG
ATTGCTTGCTGGTCCTCTACTGGAGAGGGGGTGTGAAGCCACTGCCTGCT
TGTTCCGAAGCTTCGAGGAGGCGACGCAGTCTAGATAGACACGGCTCGAA
ACTGCACCGGCATGTATCCCGCCAACACTAACGCTAGTTATAGTACATGG
GCATCACCCATCTATCTCCACGGGGGCGCTAGTTGGACTGAAGACACCGG
TCGAGTCGCGTTCTCTTTTTTGGGTCAAGAGATTTCGGTGCCTCCTGCAT
GGGTACAATAAATGAAGGCCTCGGTGTCTACATATCATTGTACACGATAG
GTCCATGGTATGATGGATATTGTGAAACGCAGCGCCTCGACTTGCCCCCC
CCCCCCCCCCCCCCCAACACCGATCTCCGGCGCCCCCTTTCTCTCCTGCC
GTTGTCCTCACCTCCGCCCATCCCATCCGCCAACAACAACGCCGACTCCA
ACATCTAACTCCCCATGAACCGAACGAACGAAAAAAACACAGAGCCGGAA
AACGCCTGACCAAGCTCTCCCGGCAGGTGGGATCATCCGCAGCCAAGGAA
GTGACAACGTTCGCGAGCTCCGCCACGGGGTGGGGGAGTGACCAGCTGAG
GGAGTGGGGCCTGCTAGGAGACGATCCGGCCGCCGTCGACCGGGGGAGCC
CGGGGTTGTTCGGGGGGCTGCTCAAGTCGAAGAAGGGCTTGGCCGGGGGG
GCGCGCGGCAGTGGCGGCGCGAAGCGGCGGCGCCCCCTGGGGTTCTCCGT
CTTGCTGGACGGCGTTTTCGGCGAGAGGAGTCGGTCGATTTACTCTGCCC
CGCCAGCGGGGGGCAGCAGAAAGCCGGGCTACAGAGGGGACCCCGTGATT
CCGGTGAGAGAAAAAAGACGGAGCAAGGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14195:972..4404+

>mRNA_L-elsbetiae_contig14195.3117.1 ID=mRNA_L-elsbetiae_contig14195.3117.1|Name=mRNA_L-elsbetiae_contig14195.3117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig14195:972..4404+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGCCTTGATCTACAAAGATATCCGGGACTGGTGGGAGCAGACCCT
ATTCCTCTACAAAACCGCAGGTGGCCTTGATCTACAAAGATATCCGGGAC
TGGTGGGAGCAGACCCTATTCCTCTACAAAACCGGGAAGCTATCGTACAC
GTACTGGCGGGGCTTTGAGCGGTACGACCAAGCCTGGGGGCTGTCCACAA
AGTACACCGAAGCGGTTGCCAAGGTGTCCAAGGAGGCCCTGGAGCTGGAC
CGCCAGTACAAGATTCGACAAAAGACCTTGAGGGAAGCTATCGTACACGT
ACTGGCGGGGCTTTGAGCGGTACGACCAAGCCTGGGGGCTGTCCACAAAG
TACACCGAAGCGGTTGCCAAGGTGTCCAAGGAGGCCCTGGAGCTGGACCG
CCAGTACAAGATTCGACAAAAGACCTTGAGAGCCGGAAAACGCCTGACCA
AGCTCTCCCGGCAGGTGGGATCATCCGCAGCCAAGGAAGTGACAACGTTC
GCGAGCTCCGCCACGGGGTGGGGGAGTGACCAGCTGAGGGAGTGGGGCCT
GCTAGGAGACGATCCGGCCGCCGTCGACCGGGGGAGCCCGGGGTTGTTCG
GGGGGCTGCTCAAGTCGAAGAAGGGCTTGGCCGGGGGGGCGCGCGGCAGT
GGCGGCGCGAAGCGGCGGCGCCCCCTGGGGTTCTCCGTCTTGCTGGACGG
CGTTTTCGGCGAGAGGAGTCGGTCGATTTACTCTGCCCCGCCAGCGGGGG
GCAGCAGAAAGCCGGGCTACAGAGGGGACCCCGTGATTCCGGTGAGAGAA
AAAAGACGGAGCAAGGGGTGAAGCCGGAAAACGCCTGACCAAGCTCTCCC
GGCAGGTGGGATCATCCGCAGCCAAGGAAGTGACAACGTTCGCGAGCTCC
GCCACGGGGTGGGGGAGTGACCAGCTGAGGGAGTGGGGCCTGCTAGGAGA
CGATCCGGCCGCCGTCGACCGGGGGAGCCCGGGGTTGTTCGGGGGGCTGC
TCAAGTCGAAGAAGGGCTTGGCCGGGGGGGCGCGCGGCAGTGGCGGCGCG
AAGCGGCGGCGCCCCCTGGGGTTCTCCGTCTTGCTGGACGGCGTTTTCGG
CGAGAGGAGTCGGTCGATTTACTCTGCCCCGCCAGCGGGGGGCAGCAGAA
AGCCGGGCTACAGAGGGGACCCCGTGATTCCGGTGAGAGAAAAAAGACGG
AGCAAGGGGTGA
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