mRNA_L-elsbetiae_contig14194.3116.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14194.3116.1
Unique NamemRNA_L-elsbetiae_contig14194.3116.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14194.3116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14194contigL-elsbetiae_contig14194:3513..4531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size452
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14194.3116.1prot_L-elsbetiae_contig14194.3116.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14194 3548..4531 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.2271452-UTR-L-elsbetiae_contig14194:3512..35471622815565.2271452-UTR-L-elsbetiae_contig14194:3512..3547Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14194 3513..3547 +
1691682962.662549-UTR-L-elsbetiae_contig14194:3512..35471691682962.662549-UTR-L-elsbetiae_contig14194:3512..3547Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14194 3513..3547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.238603-CDS-L-elsbetiae_contig14194:3547..36421622815565.238603-CDS-L-elsbetiae_contig14194:3547..3642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14194 3548..3642 +
1691682962.6743464-CDS-L-elsbetiae_contig14194:3547..36421691682962.6743464-CDS-L-elsbetiae_contig14194:3547..3642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14194 3548..3642 +
1622815565.2527177-CDS-L-elsbetiae_contig14194:4209..45311622815565.2527177-CDS-L-elsbetiae_contig14194:4209..4531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14194 4210..4531 +
1691682962.6848488-CDS-L-elsbetiae_contig14194:4209..45311691682962.6848488-CDS-L-elsbetiae_contig14194:4209..4531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14194 4210..4531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14194.3116.1

>prot_L-elsbetiae_contig14194.3116.1 ID=prot_L-elsbetiae_contig14194.3116.1|Name=mRNA_L-elsbetiae_contig14194.3116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MLPVAWTSGTSCRGLPQHSSATWCQSRCILLISSAVVDNGVTRVAAVASH
ALPLMYGRLARAIVVLFSAIMPILKFYFIWTLCEKTCTHVIYDTWVLGTA
SAPLLTSTVPFLLVCQISCSVVSVRVCVLTCQIHFTVLG
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mRNA from alignment at L-elsbetiae_contig14194:3513..4531+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14194.3116.1 ID=mRNA_L-elsbetiae_contig14194.3116.1|Name=mRNA_L-elsbetiae_contig14194.3116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1019bp|location=Sequence derived from alignment at L-elsbetiae_contig14194:3513..4531+ (Laminarionema elsbetiae ELsaHSoW15)
ACACACGATTTGCATGTGCGCGACAAGTCTAGAGGATGCTTCCTGTGGCC
TGGACTAGTGGAACTAGCTGTCGAGGTCTGCCTCAGCATAGCTCTGCGAC
ATGGTGTCAAAGCCGCTGTATACTTTTGATGCTGTCGTTGCCCTGTGGCG
CTCGCGCGGATGCGTGCTTCTGGTGGAAGCATGCACGTTTCGGAGGATCA
TGCAATTTTTTTTTCAGGTTTCTCTTGTTTTTGGATGCGCACACCGGGGC
CGGATAGCTCTGCGCTTATCTGACTCCCTGGGGACGAGCCAGTTCGCTGG
GGACCCTCTCGGTCTCCAGCAGCTGCCTTCGAGCCGGATCGCTGGGGACC
CTCTCGGTCTCCAGCAGCTGTCTTTGAGCCGGATCGCTGGGGACCCTCTC
GGTCTCCAGCAGCTGCCTTCAAGCCGGATCGCTGGGAACTCTGTTGGTCT
CCAGCAGCTGCCTCATAGCTGGACCGCTGGGAACCCTCTCGGTTTCCAGC
AACCGCCTCACAGCGGATCGTTGGGGACCCTCTTGGTTCCCAGCAGCCTT
CGCCGAGACCCGTGCTCTCGCGGCCTTTCGGGAAACAAAAGTGGTGCTCT
TCTCCTGGCGGTGATGTGTTCCGATATTAAGTTCTTGTTTTGAGCAAGTT
GTTTTTTTTTCCTGCCCGCAGGCGTCGCTGTTCATGTATTTTTTGAGATC
TTCGGCAGTAGTGGACAATGGTGTCACGCGAGTTGCTGCCGTGGCTTCGC
ATGCGTTACCACTTATGTATGGTAGACTAGCACGCGCTATTGTTGTTCTT
TTTTCTGCCATCATGCCGATTCTTAAATTTTATTTTATATGGACATTGTG
TGAAAAAACATGTACACATGTAATATACGATACATGGGTACTAGGTACGG
CCTCTGCTCCTTTACTGACATCAACTGTTCCTTTTCTGCTTGTTTGCCAA
ATTTCTTGTTCCGTCGTGTCTGTCCGAGTGTGCGTGCTCACGTGCCAGAT
ACATTTCACTGTGCTTGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14194:3513..4531+

>mRNA_L-elsbetiae_contig14194.3116.1 ID=mRNA_L-elsbetiae_contig14194.3116.1|Name=mRNA_L-elsbetiae_contig14194.3116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig14194:3513..4531+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCCTGTGGCCTGGACTAGTGGAACTAGCTGTCGAGGTCTGCCTCA
GCATAGCTCTGCGACATGGTGTCAAAGCCGCTGTATACTTTTGATATGCT
TCCTGTGGCCTGGACTAGTGGAACTAGCTGTCGAGGTCTGCCTCAGCATA
GCTCTGCGACATGGTGTCAAAGCCGCTGTATACTTTTGATATCTTCGGCA
GTAGTGGACAATGGTGTCACGCGAGTTGCTGCCGTGGCTTCGCATGCGTT
ACCACTTATGTATGGTAGACTAGCACGCGCTATTGTTGTTCTTTTTTCTG
CCATCATGCCGATTCTTAAATTTTATTTTATATGGACATTGTGTGAAAAA
ACATGTACACATGTAATATACGATACATGGGTACTAGGTACGGCCTCTGC
TCCTTTACTGACATCAACTGTTCCTTTTCTGCTTGTTTGCCAAATTTCTT
GTTCCGTCGTGTCTGTCCGAGTGTGCGTGCTCACGTGCCAGATACATTTC
ACTGTGCTTGGAATCTTCGGCAGTAGTGGACAATGGTGTCACGCGAGTTG
CTGCCGTGGCTTCGCATGCGTTACCACTTATGTATGGTAGACTAGCACGC
GCTATTGTTGTTCTTTTTTCTGCCATCATGCCGATTCTTAAATTTTATTT
TATATGGACATTGTGTGAAAAAACATGTACACATGTAATATACGATACAT
GGGTACTAGGTACGGCCTCTGCTCCTTTACTGACATCAACTGTTCCTTTT
CTGCTTGTTTGCCAAATTTCTTGTTCCGTCGTGTCTGTCCGAGTGTGCGT
GCTCACGTGCCAGATACATTTCACTGTGCTTGGA
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