mRNA_L-elsbetiae_contig14189.3111.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14189.3111.1
Unique NamemRNA_L-elsbetiae_contig14189.3111.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14189.3111.1 vs. uniprot
Match: D8LQR5_ECTSI (Similar to retinoic acid induced 17, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR5_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.680e-22
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    4 TYTRILCKCTPTQVPITCPGRGRNCKHLQCFDLQTFLNFNKDCAGAAWKCGVCN 165
            T TR+  +C    VPITCPGRGR CKHLQCFDL TFL+FNKDCAGAAWKCGVCN
Sbjct:  320 TATRLSLRCPLGLVPITCPGRGRYCKHLQCFDLNTFLSFNKDCAGAAWKCGVCN 373
[Close]
BLAST of mRNA_L-elsbetiae_contig14189.3111.1 vs. uniprot
Match: A0A6H5KI42_9PHAE (SP-RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI42_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.680e-22
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    4 TYTRILCKCTPTQVPITCPGRGRNCKHLQCFDLQTFLNFNKDCAGAAWKCGVCN 165
            T TR+  +C    VPITCPGRGR CKHLQCFDL TFL+FNKDCAGAAWKCGVCN
Sbjct:  370 TATRLSLRCPLGLVPITCPGRGRYCKHLQCFDLNTFLSFNKDCAGAAWKCGVCN 423
[Close]
BLAST of mRNA_L-elsbetiae_contig14189.3111.1 vs. uniprot
Match: K0RHT1_THAOC (SP-RING-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RHT1_THAOC)

HSP 1 Score: 70.1 bits (170), Expect = 1.100e-12
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 VTYTRILCKCTPTQVPITCPGRGRNCKHLQCFDLQTFLNFNKDCAGAAWKCGVCN 165
            VT T++   C  T++PI  P RGR+CKHLQCFDL T+L+ NK   G+ W+C VCN
Sbjct: 1354 VTCTKLSLLCPLTRMPIKTPVRGRDCKHLQCFDLLTYLHSNKTVTGSRWRCPVCN 1408
[Close]
BLAST of mRNA_L-elsbetiae_contig14189.3111.1 vs. uniprot
Match: A0A7S2FT40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FT40_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.240e-11
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   10 TRILCKCTPTQVPITCPGRGRNCKHLQCFDLQTFLNFNKDCAGAAWKCGVCN 165
            TR+  +C     PI  P RGR C HLQCFDL TFL  NK+   A W+CGVC+
Sbjct:   15 TRLSVRCPIGLGPIGIPVRGRGCTHLQCFDLVTFLQMNKNYGVARWRCGVCS 66
[Close]
BLAST of mRNA_L-elsbetiae_contig14189.3111.1 vs. uniprot
Match: A0A7S3PM10_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PM10_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.140e-10
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   25 KCTPTQVPITCPGRGRNCKHLQCFDLQTFLNFNKDCAGAAWKCGVCN 165
            KC  +   ++ P RG+ C HL CFDL+TFLNF +D   A+WKC VCN
Sbjct:  324 KCPLSLKRLSIPARGKTCTHLGCFDLETFLNFQRDAKNASWKCIVCN 370
[Close]
BLAST of mRNA_L-elsbetiae_contig14189.3111.1 vs. uniprot
Match: Q16PW9_AEDAE (AAEL011495-PA n=2 Tax=Stegomyia TaxID=53541 RepID=Q16PW9_AEDAE)

HSP 1 Score: 62.0 bits (149), Expect = 7.770e-10
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    4 TYTRILCKCTPTQVPITCPGRGRNCKHLQCFDLQTFLNFNKDCAGAAWKCGVCN 165
            T T++  KCT T   I  P RGR+CKH+QCFDL+ +L  N  C    W+C VCN
Sbjct:  500 TSTKVSLKCTVTTKRIALPARGRDCKHIQCFDLEAYLALN--CERGNWRCPVCN 551
[Close]
BLAST of mRNA_L-elsbetiae_contig14189.3111.1 vs. uniprot
Match: A0A6I8TI10_AEDAE (SP-RING-type domain-containing protein n=3 Tax=Stegomyia TaxID=53541 RepID=A0A6I8TI10_AEDAE)

HSP 1 Score: 62.0 bits (149), Expect = 7.790e-10
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    4 TYTRILCKCTPTQVPITCPGRGRNCKHLQCFDLQTFLNFNKDCAGAAWKCGVCN 165
            T T++  KCT T   I  P RGR+CKH+QCFDL+ +L  N  C    W+C VCN
Sbjct:  500 TSTKVSLKCTVTTKRIALPARGRDCKHIQCFDLEAYLALN--CERGNWRCPVCN 551
[Close]
BLAST of mRNA_L-elsbetiae_contig14189.3111.1 vs. uniprot
Match: A0A7I8W8W4_9ANNE (DgyrCDS12834 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W8W4_9ANNE)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-9
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    4 TYTRILCKCTPTQVPITCPGRGRNCKHLQCFDLQTFLNFNKDCAGAAWKCGVCN 165
            T TR+  KC  T   I  P RG +C+H+QCFDL+T+L  N  C    WKC VCN
Sbjct:  357 TATRVSLKCPVTYRKIQLPARGHDCRHIQCFDLETYLQMN--CERPTWKCPVCN 408
[Close]
BLAST of mRNA_L-elsbetiae_contig14189.3111.1 vs. uniprot
Match: A0A7I8W8W1_9ANNE (DgyrCDS12826 n=8 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W8W1_9ANNE)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-9
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    4 TYTRILCKCTPTQVPITCPGRGRNCKHLQCFDLQTFLNFNKDCAGAAWKCGVCN 165
            T TR+  KC  T   I  P RG +C+H+QCFDL+T+L  N  C    WKC VCN
Sbjct:  527 TATRVSLKCPVTYRKIQLPARGHDCRHIQCFDLETYLQMN--CERPTWKCPVCN 578
[Close]
BLAST of mRNA_L-elsbetiae_contig14189.3111.1 vs. uniprot
Match: A0A553PTQ7_TIGCA (SP-RING-type domain-containing protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PTQ7_TIGCA)

HSP 1 Score: 61.6 bits (148), Expect = 1.070e-9
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    4 TYTRILCKCTPTQVPITCPGRGRNCKHLQCFDLQTFLNFNKDCAGAAWKCGVCN 165
            T  +++  C  T   +T P RG++C+HLQCFDL+++L +N +  G  WKC VCN
Sbjct:  620 TSLKVMLTCPLTFRRMTLPSRGQDCRHLQCFDLESYLKYNAEKGGNGWKCPVCN 673
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14189.3111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQR5_ECTSI2.680e-2277.78Similar to retinoic acid induced 17, partial n=1 T... [more]
A0A6H5KI42_9PHAE2.680e-2277.78SP-RING-type domain-containing protein n=1 Tax=Ect... [more]
K0RHT1_THAOC1.100e-1254.55SP-RING-type domain-containing protein n=1 Tax=Tha... [more]
A0A7S2FT40_9STRA6.240e-1153.85Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3PM10_9STRA4.140e-1053.19Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
Q16PW9_AEDAE7.770e-1050.00AAEL011495-PA n=2 Tax=Stegomyia TaxID=53541 RepID=... [more]
A0A6I8TI10_AEDAE7.790e-1050.00SP-RING-type domain-containing protein n=3 Tax=Ste... [more]
A0A7I8W8W4_9ANNE1.060e-950.00DgyrCDS12834 n=1 Tax=Dimorphilus gyrociliatus TaxI... [more]
A0A7I8W8W1_9ANNE1.060e-950.00DgyrCDS12826 n=8 Tax=Dimorphilus gyrociliatus TaxI... [more]
A0A553PTQ7_TIGCA1.070e-944.44SP-RING-type domain-containing protein n=1 Tax=Tig... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14189contigL-elsbetiae_contig14189:3239..3403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog2880.D8LQR5
Preferred nameSIZ1
KEGG koko:K04706,ko:K10706,ko:K16063,ko:K22403
KEGG Pathwayko04120,ko04630,ko05160,map04120,map04630,map05160
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000902,GO:0001101,GO:0002682,GO:0002683,GO:0002831,GO:0002832,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006807,GO:0006935,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0008152,GO:0009266,GO:0009267,GO:0009408,GO:0009409,GO:0009414,GO:0009415,GO:0009553,GO:0009593,GO:0009605,GO:0009628,GO:0009653,GO:0009787,GO:0009791,GO:0009826,GO:0009856,GO:0009908,GO:0009909,GO:0009910,GO:0009966,GO:0009987,GO:0009991,GO:0010035,GO:0010112,GO:0010113,GO:0010183,GO:0010247,GO:0010286,GO:0010337,GO:0010565,GO:0010646,GO:0010817,GO:0016036,GO:0016043,GO:0016049,GO:0016740,GO:0016925,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0019787,GO:0019789,GO:0022414,GO:0023051,GO:0031323,GO:0031347,GO:0031348,GO:0031667,GO:0031668,GO:0031669,GO:0032101,GO:0032102,GO:0032350,GO:0032446,GO:0032501,GO:0032502,GO:0032989,GO:0033554,GO:0035670,GO:0036211,GO:0040007,GO:0040008,GO:0040011,GO:0042221,GO:0042330,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0044706,GO:0045088,GO:0045824,GO:0048229,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048519,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048589,GO:0048608,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0048868,GO:0048869,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050826,GO:0050896,GO:0050918,GO:0051093,GO:0051171,GO:0051239,GO:0051241,GO:0051301,GO:0051606,GO:0051704,GO:0051716,GO:0060560,GO:0061458,GO:0061659,GO:0061665,GO:0062012,GO:0065007,GO:0065008,GO:0070647,GO:0071496,GO:0071704,GO:0071840,GO:0080134,GO:0090352,GO:0090567,GO:0099402,GO:0140096,GO:1901419,GO:1901564,GO:1901700,GO:1903314,GO:1905957,GO:2000026,GO:2000070,GO:2000241,GO:2000242
EggNOG free text desc.SUMO transferase activity
EggNOG OGsKOG2169@1,KOG2169@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko04121,ko04812
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.8865724-CDS-L-elsbetiae_contig14189:3238..34031622815564.8865724-CDS-L-elsbetiae_contig14189:3238..3403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14189 3239..3403 -
1691682962.4552763-CDS-L-elsbetiae_contig14189:3238..34031691682962.4552763-CDS-L-elsbetiae_contig14189:3238..3403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14189 3239..3403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14189.3111.1prot_L-elsbetiae_contig14189.3111.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14189 3239..3403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14189.3111.1

>prot_L-elsbetiae_contig14189.3111.1 ID=prot_L-elsbetiae_contig14189.3111.1|Name=mRNA_L-elsbetiae_contig14189.3111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
VTYTRILCKCTPTQVPITCPGRGRNCKHLQCFDLQTFLNFNKDCAGAAWK
CGVCN
back to top

mRNA from alignment at L-elsbetiae_contig14189:3239..3403-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14189.3111.1 ID=mRNA_L-elsbetiae_contig14189.3111.1|Name=mRNA_L-elsbetiae_contig14189.3111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig14189:3239..3403- (Laminarionema elsbetiae ELsaHSoW15)
GTTACATACACACGTATTTTGTGTAAATGTACACCAACACAGGTCCCCAT
CACCTGCCCCGGACGAGGCCGAAACTGCAAACACCTGCAGTGCTTCGACC
TCCAGACGTTCCTCAACTTCAACAAGGACTGCGCGGGGGCGGCGTGGAAG
TGCGGGGTGTGCAAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14189:3239..3403-

>mRNA_L-elsbetiae_contig14189.3111.1 ID=mRNA_L-elsbetiae_contig14189.3111.1|Name=mRNA_L-elsbetiae_contig14189.3111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig14189:3239..3403- (Laminarionema elsbetiae ELsaHSoW15)
GTTACATACACACGTATTTTGTGTAAATGTACACCAACACAGGTCCCCAT
CACCTGCCCCGGACGAGGCCGAAACTGCAAACACCTGCAGTGCTTCGACC
TCCAGACGTTCCTCAACTTCAACAAGGACTGCGCGGGGGCGGCGTGGAAG
TGCGGGGTGTGCAACGTTACATACACACGTATTTTGTGTAAATGTACACC
AACACAGGTCCCCATCACCTGCCCCGGACGAGGCCGAAACTGCAAACACC
TGCAGTGCTTCGACCTCCAGACGTTCCTCAACTTCAACAAGGACTGCGCG
GGGGCGGCGTGGAAGTGCGGGGTGTGCAAC
back to top