mRNA_L-elsbetiae_contig14182.3108.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14182.3108.1
Unique NamemRNA_L-elsbetiae_contig14182.3108.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14182.3108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14182contigL-elsbetiae_contig14182:3973..4394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size422
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.3808458-CDS-L-elsbetiae_contig14182:3972..43321622815564.3808458-CDS-L-elsbetiae_contig14182:3972..4332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14182 3973..4332 +
1691682962.280131-CDS-L-elsbetiae_contig14182:3972..43321691682962.280131-CDS-L-elsbetiae_contig14182:3972..4332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14182 3973..4332 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.4769397-UTR-L-elsbetiae_contig14182:4332..43941622815564.4769397-UTR-L-elsbetiae_contig14182:4332..4394Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14182 4333..4394 +
1691682962.289872-UTR-L-elsbetiae_contig14182:4332..43941691682962.289872-UTR-L-elsbetiae_contig14182:4332..4394Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14182 4333..4394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14182.3108.1prot_L-elsbetiae_contig14182.3108.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14182 3973..4332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14182.3108.1

>prot_L-elsbetiae_contig14182.3108.1 ID=prot_L-elsbetiae_contig14182.3108.1|Name=mRNA_L-elsbetiae_contig14182.3108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
IWNSISTGLEGGRRGPYRGCFLPPSEITLGWSVARSLTRARDKQRDETRR
DETNEQPTLLLLPGDSSASKAALAFFAEARYVATGTPGTSDERSARQKGL
CRYATQTLACVFRHKHNIP*
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mRNA from alignment at L-elsbetiae_contig14182:3973..4394+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14182.3108.1 ID=mRNA_L-elsbetiae_contig14182.3108.1|Name=mRNA_L-elsbetiae_contig14182.3108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=422bp|location=Sequence derived from alignment at L-elsbetiae_contig14182:3973..4394+ (Laminarionema elsbetiae ELsaHSoW15)
ATTTGGAATAGCATCTCTACTGGACTAGAAGGAGGGAGACGGGGCCCCTA
CAGAGGTTGCTTTCTTCCCCCTTCGGAAATCACTCTGGGCTGGTCGGTTG
CGCGTTCGTTAACAAGGGCTCGAGATAAGCAGAGAGACGAGACGAGACGA
GACGAGACGAACGAGCAGCCAACACTGCTCCTGCTGCCCGGGGATAGCAG
CGCCTCCAAGGCTGCGTTGGCGTTTTTCGCCGAGGCCAGATATGTAGCTA
CCGGTACACCAGGAACCAGCGACGAGCGTTCGGCACGACAGAAAGGCTTG
TGTAGATACGCTACGCAAACTTTGGCGTGCGTTTTTAGACACAAACATAA
CATACCATAGGTATACACGAGCAGTCTTTCGTTTTGGCGTCTCGTCAACT
CCCAGGGAGTCAACAAGTCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14182:3973..4394+

>mRNA_L-elsbetiae_contig14182.3108.1 ID=mRNA_L-elsbetiae_contig14182.3108.1|Name=mRNA_L-elsbetiae_contig14182.3108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig14182:3973..4394+ (Laminarionema elsbetiae ELsaHSoW15)
ATTTGGAATAGCATCTCTACTGGACTAGAAGGAGGGAGACGGGGCCCCTA
CAGAGGTTGCTTTCTTCCCCCTTCGGAAATCACTCTGGGCTGGTCGGTTG
CGCGTTCGTTAACAAGGGCTCGAGATAAGCAGAGAGACGAGACGAGACGA
GACGAGACGAACGAGCAGCCAACACTGCTCCTGCTGCCCGGGGATAGCAG
CGCCTCCAAGGCTGCGTTGGCGTTTTTCGCCGAGGCCAGATATGTAGCTA
CCGGTACACCAGGAACCAGCGACGAGCGTTCGGCACGACAGAAAGGCTTG
TGTAGATACGCTACGCAAACTTTGGCGTGCGTTTTTAGACACAAACATAA
CATACCATAGATTTGGAATAGCATCTCTACTGGACTAGAAGGAGGGAGAC
GGGGCCCCTACAGAGGTTGCTTTCTTCCCCCTTCGGAAATCACTCTGGGC
TGGTCGGTTGCGCGTTCGTTAACAAGGGCTCGAGATAAGCAGAGAGACGA
GACGAGACGAGACGAGACGAACGAGCAGCCAACACTGCTCCTGCTGCCCG
GGGATAGCAGCGCCTCCAAGGCTGCGTTGGCGTTTTTCGCCGAGGCCAGA
TATGTAGCTACCGGTACACCAGGAACCAGCGACGAGCGTTCGGCACGACA
GAAAGGCTTGTGTAGATACGCTACGCAAACTTTGGCGTGCGTTTTTAGAC
ACAAACATAACATACCATAG
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