mRNA_L-elsbetiae_contig1418.3107.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1418.3107.1
Unique NamemRNA_L-elsbetiae_contig1418.3107.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1418.3107.1 vs. uniprot
Match: A0A6H5KTQ0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ0_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 9.120e-60
Identity = 113/160 (70.62%), Postives = 131/160 (81.88%), Query Frame = 1 
Query:  100 ANGDGAWSVASIWADMVGSATDTKAKVDSTAADVYSELRRKVLVKKERQSLEGQLSSLIRIEGNSMSCKAEDCVRRLASELEALQDNAAAW-PQKTGLAGSWKLIYSSANCGNKAKGGGGSSSKDRLTSIEDISYVSENYRLSHS-DDSVLRVYRRVDAP 573
            ANG+G WS+A++W D+VG A + KAKVDSTAA+VY EL++KVLVKKERQSLEGQLSSLIRIEGNSMSCK +DCVRRLA+ELE+LQDNAA +  QK+GL GSWKLIYS A C  K  G GG    DRL +IE ISYVSENYRLSHS ++  LRVY+RV  P
Sbjct:   54 ANGEGPWSIATLWRDVVGPAMN-KAKVDSTAAEVYHELKKKVLVKKERQSLEGQLSSLIRIEGNSMSCKKQDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSRAACEGKGGGRGG----DRLPTIEVISYVSENYRLSHSGEEDDLRVYKRVSPP 208
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BLAST of mRNA_L-elsbetiae_contig1418.3107.1 vs. uniprot
Match: D7G1W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W5_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.590e-27
Identity = 107/156 (68.59%), Postives = 120/156 (76.92%), Query Frame = 1 
Query:  295 MSCKAEDCVRRLASELEALQDNAAAW-PQKTGLAGSWKLIYSSANCGNKAKGGGGSSSKDRLTSIEDISYVSENYRLSHS-DDSVLRVYRRVDAPARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSGVRLAKQPLRKRMFFGFLRR 756
            +  +  DCVRRLA+ELE+LQDNAA +  QK+GL GSWKLIYSSA C    +G GG    DRLT+IEDISYVSENYRLSHS +   LRVY+RV  P    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  G    ++K PLR+R FFGFLRR
Sbjct:    5 LDSQKRDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSSAAC----EGNGGGRGGDRLTTIEDISYVSENYRLSHSGEQDDLRVYKRVSPPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRG----VSKLPLRRRTFFGFLRR 152
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1418.3107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTQ0_9PHAE9.120e-6070.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G1W5_ECTSI2.590e-2768.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1418contigL-elsbetiae_contig1418:20438..25316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003880.1
Exons4
Model size759
Cds size759
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1418.3107.1prot_L-elsbetiae_contig1418.3107.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1418 20438..25316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.2817705-CDS-L-elsbetiae_contig1418:20437..206261622815564.2817705-CDS-L-elsbetiae_contig1418:20437..20626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1418 20438..20626 +
1691682962.2395928-CDS-L-elsbetiae_contig1418:20437..206261691682962.2395928-CDS-L-elsbetiae_contig1418:20437..20626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1418 20438..20626 +
1622815564.2955856-CDS-L-elsbetiae_contig1418:21354..214711622815564.2955856-CDS-L-elsbetiae_contig1418:21354..21471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1418 21355..21471 +
1691682962.2496767-CDS-L-elsbetiae_contig1418:21354..214711691682962.2496767-CDS-L-elsbetiae_contig1418:21354..21471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1418 21355..21471 +
1622815564.307935-CDS-L-elsbetiae_contig1418:23409..235011622815564.307935-CDS-L-elsbetiae_contig1418:23409..23501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1418 23410..23501 +
1691682962.2606158-CDS-L-elsbetiae_contig1418:23409..235011691682962.2606158-CDS-L-elsbetiae_contig1418:23409..23501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1418 23410..23501 +
1622815564.3220248-CDS-L-elsbetiae_contig1418:24955..253161622815564.3220248-CDS-L-elsbetiae_contig1418:24955..25316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1418 24956..25316 +
1691682962.2707682-CDS-L-elsbetiae_contig1418:24955..253161691682962.2707682-CDS-L-elsbetiae_contig1418:24955..25316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1418 24956..25316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1418.3107.1

>prot_L-elsbetiae_contig1418.3107.1 ID=prot_L-elsbetiae_contig1418.3107.1|Name=mRNA_L-elsbetiae_contig1418.3107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=253bp
SAFVVPGPSTFTHQNTELRSTSSSAIRGMSMSAANGDGAWSVASIWADMV
GSATDTKAKVDSTAADVYSELRRKVLVKKERQSLEGQLSSLIRIEGNSMS
CKAEDCVRRLASELEALQDNAAAWPQKTGLAGSWKLIYSSANCGNKAKGG
GGSSSKDRLTSIEDISYVSENYRLSHSDDSVLRVYRRVDAPARAAATAAA
AAGDDTMAAGASAEGGKKKAGRAAAAAAATGSGVRLAKQPLRKRMFFGFL
RR*
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mRNA from alignment at L-elsbetiae_contig1418:20438..25316+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1418.3107.1 ID=mRNA_L-elsbetiae_contig1418.3107.1|Name=mRNA_L-elsbetiae_contig1418.3107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4879bp|location=Sequence derived from alignment at L-elsbetiae_contig1418:20438..25316+ (Laminarionema elsbetiae ELsaHSoW15)
TCGGCCTTCGTCGTGCCAGGGCCTTCCACCTTCACCCACCAAAACACAGA
GCTGAGATCGACGTCATCATCAGCGATAAGGGGGATGAGCATGTCAGCTG
CTAACGGGGATGGTGCGTGGTCGGTTGCATCGATCTGGGCCGATATGGTG
GGGTCTGCAACCGATACCAAGGCAAAGGTGGACTCGACGGTGAGCATCAA
AGAGAGAAGAGCGGGTGGCGCATGCGTTCGTGTGTTTTTTCAAACCTATC
TTGTCGCTCCGTCCCTCAGTCTCTGCCCGCCGGTGGCAAGAGAAGAAAAT
GGAGAGTTAACTGCGTATATGGTTGTTGCAATGTCACGACAGCGACAGTA
ACATGGGCGATTCGAGGTCGCGCTCCTCTTGCTGATGTCTGTGCACATCT
CGTACTTCGCGGAAAGTGTATTTTATACTTCGTATTTGTTTAGGCGCTCC
GCTCATCAGCCCTTCTGTCTCGGAATATGGGGAATGGCGGGAGATGCCTG
CTGTTGTAACCATTGCTGTGACGATACCGACGCACAGACCGCACTGCTGT
TGTACAAGCGTGGACAGGGGCTGGTCAGCACGTGTGTACCTTCCTTCGCC
TTACCCTACACATGCACGATCACACACGGGTTCCACGCCAACCCTACGCC
TTTTTGGTCCGTTTTTCACGCGAGAGAGTGGTACCCAGCTTTGTGATGAT
GTTGAGCTCTTTTTTTCGTCGTGACCGCTGACAGCAGCAGGCCCATTAGC
ACCGCAGACAGATGATGTCCTTTGCATTCAGACAGAGTAGCATAGCGTGA
TCCGGGGGTGGACACGCGCTTGCCACATCATGACTCGTGGACAGTACATC
CTCGGTCAACACTGGAATCCCCGCTCTCGGAATTTCTCAAGCAGTTTTTT
TTTTTTTTTTCCAACAGGCTGCGGACGTTTACTCGGAGCTCAGGAGAAAG
GTGCTGGTCAAGAAGGAGAGGCAATCACTGGAAGGACAGCTCTCGTCCCT
GATCCGTATCGAGGGCAACAGCATGTCGTGCAAGGTGCGCAGGCAGGGAA
GGGGGTGATGATGAACGTCGTGCGTGTATTTATTTTTTTGAAAAAGTAAA
AAAGTTTTTCACCTGCGGATATATTTTCAGTTTGAGCCAAGCCCGAGAGA
CAAGACGAGACAAACCCAACGCTTGCTCAGACACGCACACCGATCGATTA
ATTGCCCTCTTTTGTTTGTGTGGGGTACGCCAATTGGTACGCCCCCGCTT
GCATCTACCGTCACCGGGCAGTCAGTTGCACTGGGGCTTGCAGGCTCTCC
CTTGCAAGCTATACAGGAGATGACCCCCCACACACCCTGTCCGTGCGTTT
GCGACCGTCAGCTGACGCTATAGAATTTAGCCCACAGCGCGTCGAAACGC
TACACAATATCCATCCATACATACATACGTGTGTGCTTTCCAAGGGGTGG
ACATCTGAGAAAGAGAGAGACGGGCGGGGGGGGGGAGCAGAGAGCAGTGT
GTGCAGGTGCTTGGCAGCGTAATCCCGCTACTACTACCTATGTAGTATGT
TCTTGTCTAAATATGTAATAATGTACCGCACTTTCTGCGATGGGTGCCCG
CAAAACGGCGCTGCCCGTTGGTCGTACTACTCAAATTATTTCCGGCCAGC
ATTAGAGATGTTTGATGTTTGTGACTGCACTTTCAACGTACGTGTACTGC
GTGTTTTTTTTTTTGCGAGTCGGAAAACTCGAAAAAGGAGTCCATGATCA
CCGGAACGATTGTCTGGATTGTACTTACGTCGAAGGATATTTTACGGCCA
ACAAGCTCAAGGGAGCAAGCAGTAACCGTGATGGCAGGCAGCATTATGAT
TGAGCAGACTTTCCGACAATCGAATGCCCCTCTTCCATCTCTGAAATTAG
TGCTGTCGAAAGTTTTTCGCGCGTAACCGTAGATACATACGTCACACGGC
GCCCGGATATAGCAGGGTTGTTCGGCGCAGCTGTCGTTGGATGACGTGGC
TTTGACGATAAACCTTCTCGCAAGCAGTATATACATATGCAGCGCTCACA
AAGTATGCAACATCTCCTCCTCCCATGAATACAGTCCCGATACACAAGAT
GGCAACCGAACTGTCTTTGTTGAGCCTGTTATGAGTAACAGGGGAGATAT
CACTTACATACATACAAAATGCCCATGATAAGACAAACCTACTCGGTTTC
AACGCCTCTTAACTACTGCTGTTGTGTATAGCCCACAAAAGGTATAATTC
GAAGTACGACTGGAGTTGGAGACAAAGAAAAAGTAAAAAATAGTGCAAGA
TTCCTTCCAGTGTTTTGAAGTGTCGCTCCACTACTAAAATACCTGGTCGG
TTAATCAACTTTGTTGCATAGGTGCTTCATTTAATGACTCTACTTGTGTG
ACTCTGTCTGTCTGTCGTACACATGATAAAACTACCTACGAAACGTTTGG
CACGCGGAACGTCTGGGTGTCTAGTGACGTCTGTGACGTCACGTTCGCCC
GGGGCATCTCGGCCCCCCTTCTCTTCTGTGCCGCAAGCAAGCTGTTTATT
GCCTCCAGCATGTGGGTGTAGCATCCCTGGTGCTGCGCCGGGACAGACCG
AAAGCAGCATGCATACCTCTTGATCGCACCCATCTCGGGTGCATAAGGTA
CAACATCCATATGTACGTAGTGTACGACTGGAGCCGAAACGTCGCCAACT
CTTTGCCCCAAAATGCCGCAATGTTTCTTCGCCCCCCCCCCCCCCCGTAA
GACTTACTTTCATCGTGTTTTGTTTTCATTCGCACATCACGACAGACATG
CCTGAAATACAAATGTCTCGTAGTTTCCTTACTCCACACCCACACCACTC
GTCACGCCTTTCGCTTCAAACCCCGAAACCATTCATCGATTCCTTATTCC
ACACCGCCCGCACCACTCGTCACCCCTTTTGCTAAGAATGCAAACTCCCG
AAACCATATTGTAACCATCCAGGCGGAGGACTGCGTGCGGCGGCTGGCCT
CGGAGCTGGAGGCCCTCCAGGACAACGCAGCGGCCTGGCCACAAAAGACG
GGACTTGCGGGAAGGTGCGGTTTGGTTTTTTGCGTGTCGGTGTTTTTGTT
CCGTGTTGGTGTCTGTTTCTGTGTTGCGTGCGTGTGCGTGCGTGCGTGTG
TGTGTGTTGCTGTTGTTTCTCACGTTATTTAGCTCTCTGAAATAGGTCAA
AAACATCCGTCGGAGGCCGTAGTCACAAGAACAGGGCCCGTGGTCACAGA
GACAGGGCACACTCGACGTCGCTCAAGAAAAAATAAAAACCAACTTATAC
ATACGTGCGTAGGCGCCCGGCGATACTAGACTGAATGTCGAAGGGGTCTT
GCGTCATGCTAGCACTAAACACGAACAGCGGGTAGTAGGGTACATACCAC
TCGGAGGATAACATGAAAGAAAGCTATCTAGAAAGAGACCAGCTACCACG
CCAGGTAGAGGAAAGAGAGCTAGGTAGAACCGAGGGCTTCACACACTTGC
CTACAATGCCGGAGATTTCCGTGCCGGGTTCTCGCCCACCAGGCACCTTC
CAAACCCGCGCCGCACTCCTGGGTCCTGGGTACGATTCCAGGGGTGCAGT
GGGGGGGGGGGGGGGTAAAATAAAGCAAAGGGCAGGAAGGCAGAGACCGG
CAGCAGCATTGTGTGTGTGTGTGTGTGTATTCTGTGTATTTATGAACTCA
TGTAGCCACCAAACCAACGTTGGCGGTGTACGTTGGCGGTGTCACAGATT
GCACATGTACATTCTCACGAAAGACGTTTTGATGTGTCGGCCTTCCCGTG
CTGCGCCCACCCGCGACTTTTTAGCATATATGTTCTGCCTGCCCCCTTCG
TCGGGCCCAACCTCGCCCGAAACTGACTGCTGTTGATTAGGAGTACAATA
GAGAGACCCGGGAAGTTGACTTGAAGCAAGTAAAGCCTGCACACGCTTTT
TGAAAGGCGCAAACAAGGCGGTGCAACAGGCAGGATCCACGGGAGCCCCG
TGCGTGTTTCTCGGGACCTAACATGACGTCGGCCCGAGCGATACATAGAT
AGCACCTTGTGCGGTGTTGAGTTTTTTAGTTTTTTCCGTGATTATGTACT
GCAGCAAGGGGATCTCGCGGTTTACAGCTCTCTGCTGCTGCTGCTGCTGC
GGGCCTAACGAAATCCGGCGGACTGACTGCCGTGGGGTAGTAAGCACCGC
CTGTGGGCGCAGAAAACGTTTTGCTACATCAATTTAGCCTGCCGTTTAGA
CCCCCGCCCCAACATTTATTTTGACTGCTTGCTGCCTTGCCTGTGTGTGA
ATCATGCAGAAATATGGAAAATTGTCGACCACCCTTACCCGCCGAATTCA
ACTTGTTTTTGACGTGCAATCCCTCCCTCCCCCCCCCTCCCTCTCCTCTC
TTGTCTGCTCCTCCACCACGCCTTCCGCGTGCGTTGCTCTTTTCGTTTGC
GCGCGTGCGGTGGCACGGAACGGAACGGAACGGAATACCAAAAAACGGCC
ACGAAAACAAAAAAACAGCTGGAAGCTCATCTACTCGAGCGCGAACTGCG
GCAACAAGGCCAAGGGCGGCGGCGGCTCCTCCTCCAAGGACCGCCTGACC
TCGATCGAGGACATCTCGTACGTCTCCGAGAACTACCGCCTCTCCCACTC
GGACGACAGCGTCCTGCGCGTCTACCGCCGCGTCGATGCCCCGGCGCGGG
CGGCGGCAACGGCGGCGGCGGCGGCAGGCGATGACACCATGGCCGCGGGC
GCGTCAGCGGAGGGTGGCAAGAAGAAGGCCGGGCGAGCAGCAGCTGCCGC
GGCCGCCACCGGGTCGGGAGTGCGTCTGGCCAAGCAGCCGCTGCGCAAGC
GCATGTTCTTCGGGTTCCTCCGGCGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1418:20438..25316+

>mRNA_L-elsbetiae_contig1418.3107.1 ID=mRNA_L-elsbetiae_contig1418.3107.1|Name=mRNA_L-elsbetiae_contig1418.3107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1518bp|location=Sequence derived from alignment at L-elsbetiae_contig1418:20438..25316+ (Laminarionema elsbetiae ELsaHSoW15)
TCGGCCTTCGTCGTGCCAGGGCCTTCCACCTTCACCCACCAAAACACAGA
GCTGAGATCGACGTCATCATCAGCGATAAGGGGGATGAGCATGTCAGCTG
CTAACGGGGATGGTGCGTGGTCGGTTGCATCGATCTGGGCCGATATGGTG
GGGTCTGCAACCGATACCAAGGCAAAGGTGGACTCGACGTCGGCCTTCGT
CGTGCCAGGGCCTTCCACCTTCACCCACCAAAACACAGAGCTGAGATCGA
CGTCATCATCAGCGATAAGGGGGATGAGCATGTCAGCTGCTAACGGGGAT
GGTGCGTGGTCGGTTGCATCGATCTGGGCCGATATGGTGGGGTCTGCAAC
CGATACCAAGGCAAAGGTGGACTCGACGGCTGCGGACGTTTACTCGGAGC
TCAGGAGAAAGGTGCTGGTCAAGAAGGAGAGGCAATCACTGGAAGGACAG
CTCTCGTCCCTGATCCGTATCGAGGGCAACAGCATGTCGTGCAAGGCTGC
GGACGTTTACTCGGAGCTCAGGAGAAAGGTGCTGGTCAAGAAGGAGAGGC
AATCACTGGAAGGACAGCTCTCGTCCCTGATCCGTATCGAGGGCAACAGC
ATGTCGTGCAAGGCGGAGGACTGCGTGCGGCGGCTGGCCTCGGAGCTGGA
GGCCCTCCAGGACAACGCAGCGGCCTGGCCACAAAAGACGGGACTTGCGG
GAAGGCGGAGGACTGCGTGCGGCGGCTGGCCTCGGAGCTGGAGGCCCTCC
AGGACAACGCAGCGGCCTGGCCACAAAAGACGGGACTTGCGGGAAGCTGG
AAGCTCATCTACTCGAGCGCGAACTGCGGCAACAAGGCCAAGGGCGGCGG
CGGCTCCTCCTCCAAGGACCGCCTGACCTCGATCGAGGACATCTCGTACG
TCTCCGAGAACTACCGCCTCTCCCACTCGGACGACAGCGTCCTGCGCGTC
TACCGCCGCGTCGATGCCCCGGCGCGGGCGGCGGCAACGGCGGCGGCGGC
GGCAGGCGATGACACCATGGCCGCGGGCGCGTCAGCGGAGGGTGGCAAGA
AGAAGGCCGGGCGAGCAGCAGCTGCCGCGGCCGCCACCGGGTCGGGAGTG
CGTCTGGCCAAGCAGCCGCTGCGCAAGCGCATGTTCTTCGGGTTCCTCCG
GCGCTGACTGGAAGCTCATCTACTCGAGCGCGAACTGCGGCAACAAGGCC
AAGGGCGGCGGCGGCTCCTCCTCCAAGGACCGCCTGACCTCGATCGAGGA
CATCTCGTACGTCTCCGAGAACTACCGCCTCTCCCACTCGGACGACAGCG
TCCTGCGCGTCTACCGCCGCGTCGATGCCCCGGCGCGGGCGGCGGCAACG
GCGGCGGCGGCGGCAGGCGATGACACCATGGCCGCGGGCGCGTCAGCGGA
GGGTGGCAAGAAGAAGGCCGGGCGAGCAGCAGCTGCCGCGGCCGCCACCG
GGTCGGGAGTGCGTCTGGCCAAGCAGCCGCTGCGCAAGCGCATGTTCTTC
GGGTTCCTCCGGCGCTGA
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