mRNA_L-elsbetiae_contig1418.3106.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1418.3106.1
Unique NamemRNA_L-elsbetiae_contig1418.3106.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1418.3106.1 vs. uniprot
Match: A0A6H5KFF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.570e-24
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 MKFSTVAASLCVLGSASAFVFPMPVRSAGATRVSASLEEDAVAKTKAREALIGSAGMEQLIKMV---DGRDAE 210
            MKFSTVAASLCVLGSASAFV P+P RS  ATR+SASL+E A  K KAREALIGSAGMEQLIKMV   DG D E
Sbjct:    1 MKFSTVAASLCVLGSASAFVLPVPARSGVATRMSASLDEAAAEKAKAREALIGSAGMEQLIKMVAQDDGEDEE 73
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BLAST of mRNA_L-elsbetiae_contig1418.3106.1 vs. uniprot
Match: D7G1W7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W7_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 5.190e-6
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   97 VSASLEEDAVAKTKAREALIGSAGMEQLIKMV---DGRDAE 210
            +S+SL+E A  K KAREALIGSAGMEQLIKMV   DG D E
Sbjct:    1 MSSSLDEAAAEKAKAREALIGSAGMEQLIKMVAQDDGEDEE 41
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1418.3106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFF7_9PHAE1.570e-2478.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1W7_ECTSI5.190e-670.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1418contigL-elsbetiae_contig1418:15124..17010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003860.1
Exons2
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.233849-CDS-L-elsbetiae_contig1418:15123..152051622815564.233849-CDS-L-elsbetiae_contig1418:15123..15205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1418 15124..15205 +
1691682962.2220578-CDS-L-elsbetiae_contig1418:15123..152051691682962.2220578-CDS-L-elsbetiae_contig1418:15123..15205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1418 15124..15205 +
1622815564.2481053-CDS-L-elsbetiae_contig1418:16882..170101622815564.2481053-CDS-L-elsbetiae_contig1418:16882..17010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1418 16883..17010 +
1691682962.2311034-CDS-L-elsbetiae_contig1418:16882..170101691682962.2311034-CDS-L-elsbetiae_contig1418:16882..17010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1418 16883..17010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1418.3106.1prot_L-elsbetiae_contig1418.3106.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1418 15124..17010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1418.3106.1

>prot_L-elsbetiae_contig1418.3106.1 ID=prot_L-elsbetiae_contig1418.3106.1|Name=mRNA_L-elsbetiae_contig1418.3106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
MKFSTVAASLCVLGSASAFVFPMPVRSAGATRVSASLEEDAVAKTKAREA
LIGSAGMEQLIKMVDGRDAE
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mRNA from alignment at L-elsbetiae_contig1418:15124..17010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1418.3106.1 ID=mRNA_L-elsbetiae_contig1418.3106.1|Name=mRNA_L-elsbetiae_contig1418.3106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1887bp|location=Sequence derived from alignment at L-elsbetiae_contig1418:15124..17010+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTTCTCCACCGTAGCTGCCTCGTTGTGTGTTCTCGGAAGTGCCTC
GGCGTTCGTGTTCCCGATGCCCGTACGATCTGGTGAGTCGGAACTACATG
CGTTTTGTCTTTCTTGACTCGGCTGACTAGGCGGTTGGGAGCGGCCTCGC
GCACACCGAGCGATTGCGGTTCATGCAGCGACGCCCTGCACCAAGTCCCA
GGGTTTACTGTCTCGGCGCCATTCCATGCTGTCCGTTGCAGTTCTCCTCG
ACTCAGCTGGCTGGGGTGACCGGTGTTTAAGGGGAAAGGCGCAGCGTACG
TTGTAGCTGTTGAGCGCTTGCGTACGGATGCACACGCCTCTCGCCGTAGC
GGACGAGAGACCACCGACTGCCCTCTGCCATGCGGCGTCTTCTCGCCAGA
CTGAAACCTTGGCCTCTCTCCTCGCCTGGTGTTCTACGTCGGATCTCTCT
TCTAGAGTAAATCCCTTGTGTACCGCCCGCGGGCTTGACGCTAAAGCAGC
AGTAGATGCTCGTTCTTTGGTCTCGCGGGTGGCACACCACGTTCACCCTA
GATTAATATTATTTGTAGTAATTCCATGTCCGAATAAACATGTGTCGTGA
CGGCGTGCGTGGTCGGCAGCTTTAGTTGGTGTGAGATTGGGAGAGAGGAC
AGCCCATAGGCGACATGGGGCCCTCCCACATGAACTGGACTGCAGTATTA
TATTAAGCTGCCGCCACGGGGCAGCCTTGGAAATGCAACTGGTAACATGT
ACATAAATGTACTTCGTAGTAGGTACATAACGTCCCTCTTGCTTCAAAAA
CCCTGACTCCTTGGTAGTGAAATTCTGTAGACTTGTGCCATCCATAGAGG
CATCTTTCCACGCAAGCATCCGACCGCTTTGTTTACGCAACCAGTGGAGC
TGTCGTTCGGGTGCTTCGAAGGAACTTTTATGTACAGACCGATTGAAGAG
CAGATGGTCCTTTTTGGTGTATTGTATTGTACCCATAGATAGTCAGAGAC
GCCCTCCAGTTCGATGTGTAGGTGTGTAGCCCAGGCCGGCTCTTGTTTGC
TCTGGAAGGTTCCGCGGAAAGTTGAAGCGCATGTATGCACGGTATATTCA
TGTACTGCAAAAAGGAAGGCAGCGGGCAGCAGTTGTGTGTACTATGTACT
CCAATGTAGGTGTGTACACCGGTCTCCGTTGTATTGTAGCACACGACCTT
TCTGTACTTGTTTCGTGGCGACTGGTTTATTCTCTCGGCGTGCTTCTAAT
TTTCCAATATATTACTCTATATTTTTGTTTCATTTCGGTCGCTCGTTCTA
AAGACCTGTCGTCCTATCTATGTACTGTCGGCACGTGCCACGTGTATTTC
TTTGAAATCTAGTTGTCTCCAGGGGTGGGGGTGTCGGCCCGGAGTCGCCC
TTTTCGAAAGCCGCGGCGAGAGAGGAAAGAGGAAGCAACATGGACACAAC
ACGCCGCTGTTGAAAATCAACCCTCTTTTGACATCGTTCGTATACACACT
TCTCTGAGCTCAACAAACAGCAGCAGTATCGGCTGCGGGCAGGCTCGTGG
TCGCTACGGTTCGATCGATGCTTTTGGGTTGGAAGCACAGTTTTTCACTC
AACACGCCCTTCATAAAATGCAATAAATAGTCGTCAAACGCTGCTACTAC
TTGTGGCGTACTCTCCACTCCCAGCTGGTTGATAACTTGCTGCTGCTAAA
TTTAGATGCATTAACACGTGTTCACACTGAATTGATTGTTAATGCTGATG
TTGCCGCAGCCGGTGCAACTCGCGTGTCCGCGTCTCTCGAAGAGGATGCG
GTGGCGAAGACCAAGGCACGCGAAGCTCTGATCGGATCAGCAGGCATGGA
GCAGCTGATCAAGATGGTGGACGGACGGGACGCTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1418:15124..17010+

>mRNA_L-elsbetiae_contig1418.3106.1 ID=mRNA_L-elsbetiae_contig1418.3106.1|Name=mRNA_L-elsbetiae_contig1418.3106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig1418:15124..17010+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTTCTCCACCGTAGCTGCCTCGTTGTGTGTTCTCGGAAGTGCCTC
GGCGTTCGTGTTCCCGATGCCCGTACGATCTGATGAAGTTCTCCACCGTA
GCTGCCTCGTTGTGTGTTCTCGGAAGTGCCTCGGCGTTCGTGTTCCCGAT
GCCCGTACGATCTGCCGGTGCAACTCGCGTGTCCGCGTCTCTCGAAGAGG
ATGCGGTGGCGAAGACCAAGGCACGCGAAGCTCTGATCGGATCAGCAGGC
ATGGAGCAGCTGATCAAGATGGTGGACGGACGGGACGCTGAGCCGGTGCA
ACTCGCGTGTCCGCGTCTCTCGAAGAGGATGCGGTGGCGAAGACCAAGGC
ACGCGAAGCTCTGATCGGATCAGCAGGCATGGAGCAGCTGATCAAGATGG
TGGACGGACGGGACGCTGAG
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