mRNA_L-elsbetiae_contig14167.3095.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14167.3095.1
Unique NamemRNA_L-elsbetiae_contig14167.3095.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14167.3095.1 vs. uniprot
Match: J3L2B6_ORYBR (Uncharacterized protein n=2 Tax=Oryza brachyantha TaxID=4533 RepID=J3L2B6_ORYBR)

HSP 1 Score: 49.3 bits (116), Expect = 5.030e-5
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:   25 DKYAYTTAIHAAGQLGRWARCVRYLDEMDANGVEKDVVTISCAISACA-----DKGQW 183
            D  ++T+ I A  + G+W + +R+L EM A G+  + VTI   +SACA     DKG+W
Sbjct:  187 DVVSWTSMISALARCGQWDKVLRFLSEMQAEGINPNKVTIISVLSACAQTQAVDKGRW 244
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14167.3095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
J3L2B6_ORYBR5.030e-539.66Uncharacterized protein n=2 Tax=Oryza brachyantha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14167contigL-elsbetiae_contig14167:3644..3862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.1974902-CDS-L-elsbetiae_contig14167:3643..38621622815563.1974902-CDS-L-elsbetiae_contig14167:3643..3862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14167 3644..3862 -
1691682961.609011-CDS-L-elsbetiae_contig14167:3643..38621691682961.609011-CDS-L-elsbetiae_contig14167:3643..3862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14167 3644..3862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14167.3095.1prot_L-elsbetiae_contig14167.3095.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14167 3644..3862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14167.3095.1

>prot_L-elsbetiae_contig14167.3095.1 ID=prot_L-elsbetiae_contig14167.3095.1|Name=mRNA_L-elsbetiae_contig14167.3095.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MQEDGVWVDKYAYTTAIHAAGQLGRWARCVRYLDEMDANGVEKDVVTISC
AISACADKGQWAQVCGGPRALV*
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mRNA from alignment at L-elsbetiae_contig14167:3644..3862-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14167.3095.1 ID=mRNA_L-elsbetiae_contig14167.3095.1|Name=mRNA_L-elsbetiae_contig14167.3095.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=219bp|location=Sequence derived from alignment at L-elsbetiae_contig14167:3644..3862- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGAGGATGGGGTGTGGGTGGACAAGTACGCCTACACCACGGCGAT
CCACGCGGCCGGGCAGCTCGGCAGGTGGGCGCGGTGCGTGCGCTACCTGG
ACGAGATGGATGCGAACGGGGTGGAGAAGGACGTCGTCACCATCAGCTGC
GCCATCAGCGCCTGCGCCGACAAGGGCCAGTGGGCACAGGTGTGCGGAGG
GCCTCGTGCGCTTGTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14167:3644..3862-

>mRNA_L-elsbetiae_contig14167.3095.1 ID=mRNA_L-elsbetiae_contig14167.3095.1|Name=mRNA_L-elsbetiae_contig14167.3095.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig14167:3644..3862- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGAGGATGGGGTGTGGGTGGACAAGTACGCCTACACCACGGCGAT
CCACGCGGCCGGGCAGCTCGGCAGGTGGGCGCGGTGCGTGCGCTACCTGG
ACGAGATGGATGCGAACGGGGTGGAGAAGGACGTCGTCACCATCAGCTGC
GCCATCAGCGCCTGCGCCGACAAGGGCCAGTGGGCACAGGTGTGCGGAGG
GCCTCGTGCGCTTGTGTGAATGCAAGAGGATGGGGTGTGGGTGGACAAGT
ACGCCTACACCACGGCGATCCACGCGGCCGGGCAGCTCGGCAGGTGGGCG
CGGTGCGTGCGCTACCTGGACGAGATGGATGCGAACGGGGTGGAGAAGGA
CGTCGTCACCATCAGCTGCGCCATCAGCGCCTGCGCCGACAAGGGCCAGT
GGGCACAGGTGTGCGGAGGGCCTCGTGCGCTTGTGTGA
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