mRNA_L-elsbetiae_contig14160.3093.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14160.3093.1
Unique NamemRNA_L-elsbetiae_contig14160.3093.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14160.3093.1 vs. uniprot
Match: D8LE51_ECTSI (SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE51_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 5.890e-121
Identity = 275/540 (50.93%), Postives = 325/540 (60.19%), Query Frame = 1
Query:    4 ANLDVVPTEFAALLDYQRIMSQLVLKEALAGVQE--ARDASRSRSLSVKGEIYAACLLDVDDESNGGKQGKKGGKXXXXXXXXXXPCSSPYSPXXXSXXXSPGDGKLYSLKVKPG-PXXXXXGHHRDQAPKSPFWGNELVALSSPTWTTATSSVLGVVQSWDPVYDKLSKRPFGRDTVL-IRLLVCASPGGGDGAGGAGGWLPLGHARECLGRSKKVAGVPVTLSGGASLMTACREFQAVMSVSGLPEAVRRCLLDPSVVGKESRAAXXXXXXXXXXXXXREGPSWRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAWGSAPPP---NVPAKLWRSLLQVFNRSQVQAIRKVAEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGGGGXXXXXXXXAAAPRGPGARVMVGSSVAGGGVAGTEGGEGAEGKGKKXXXXXXKRIVSPLEAATTRVLIVAPSNAAVDELVLRLCQDGIPSPEGGVRFPRVVRVGGGRVDRDAXXXXXXXXXXXXXXXXTNGGGKDGLRSEVVE 1602
            ANL  VPTEFA+LLDYQ+ MSQLVLKEA+AG+Q+  A   SR   L V+GE+  A LLDVD E   GK+GK G              S+P  P   S      DGKLYSL+VK   P     G+ +D  P SPF G ELV+L+SP W  +++++LGVVQ+WDPVYDKLS++P  +  V+ IR+LVC S  GGDG GG GGWLPL   +ECLG      GVPVT+S   SL+TACREFQAVMS+  LPE V   LL+PS        A                 S RG      XXXXXXXXXXXXX          +  +   PPP   +VP KLW SL+Q FN SQVQA+RKV +GSPSGFTLLQGPPGTGKTRTIMGIVGVLLAG CPFP G                G GA+V +GSS++G         +G       XXX    RIVSPLE A+ R+LIVAPSNAAVDELVLRLCQ+G+P  +G VRFPRVVRVGG R D +                    GG+DG+ S +VE
Sbjct:  202 ANLVPVPTEFASLLDYQKTMSQLVLKEAVAGLQQESATKMSRGNVLMVRGEVETANLLDVDGEKRAGKKGKGG---------QPSSASAPLPPPSVSSS----DGKLYSLRVKLILPTVPAYGNGKDYVPASPFRGQELVSLTSPMWRASSNALLGVVQAWDPVYDKLSRKPSTKTVVVKIRILVCVSSTGGDGVGGRGGWLPLKDIQECLGNDN--CGVPVTISSAGSLVTACREFQAVMSLPELPERVHEFLLNPS-------KAPTTLLPRFVVINHLPVSSSRGGREAGGXXXXXXXXXXXXXDLSPP-----SSVYTPXPPPGPSSVPPKLWMSLIQKFNSSQVQAMRKVVDGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGACPFPSGHNSEGGEGGAS-----GSGAKVTIGSSISG---------KGKXXXXXXXXXQKAARIVSPLEKASPRILIVAPSNAAVDELVLRLCQEGVPGVDGRVRFPRVVRVGGPRADGERSGTVDGRG---------GSGGRDGVTSTMVE 691          
BLAST of mRNA_L-elsbetiae_contig14160.3093.1 vs. uniprot
Match: A0A6H5JS06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS06_9PHAE)

HSP 1 Score: 397 bits (1019), Expect = 2.600e-120
Identity = 290/579 (50.09%), Postives = 338/579 (58.38%), Query Frame = 1
Query:    4 ANLDVVPTEFAALLDYQRIMSQLVLKEALAGVQE--ARDASRSRSLSVKGEIYAACLLDVDDESNGGKQGKKGGKXXXXXXXXXXPCSSPYSPXXXSXXXSPGDGKLYSLKVKPG-PXXXXXGHHRDQAPKSPFWGNELVALSSPTWTTATSSVLGVVQSWDPVYDKLSKRPFGRDTVLIRLLVCASPGGGDGAGGAGGWLPLGHARECLGRSKKVAGVPVTLSGGASLMTACREFQAVMSVSGLPEAVRRCLLDPSVVGKESRAAXXXXXXXXXXXXXREGPSWRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAWGSA----------------------------------------PPPN---VPAKLWRSLLQVFNRSQVQAIRKVAEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGGGGXXXXXXXXAAAPRGPGARVMVGSSVAGGGVAGTEGGEGAEGKGKKXXXXXXKRIVSPLEAATTRVLIVAPSNAAVDELVLRLCQDGIPSPEGGVRFPRVVRVGGGRVDRDAXXXXXXXXXXXXXXXXTNGGGKDGLRSEVVE 1602
            ANL  +PTEFA+LLDYQ+ MSQLVLKEA+AG+Q+  A   SR   L V+GE+  A LLDVD E+ G K+G+ G              S+P  P   S      DGKLYSL+VK   P     G+ +D  P SPF G ELV LSSP W  +++++LGVVQ+WDPVYDKLS++P  +  V IR+LVC S  GGDG GG GGWLP    +ECLG      GVPVT+SG  SL+TACREFQAVMS+  LPE V   L++PS   K S                   PS RG     XXXXXXXXXXXXXXXXXXXXXXXX                                               PPP    VP KLW SL+Q FN SQVQA+RKV +GSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFP G                G GA+V +GSS++G         +G   KGK+       RIVSPLE A+ R+LIVAPSNAAVDELVLRLCQ+G+P  +G VRFPRVVRVGG R D +                  +GGGKDG+ S VVE
Sbjct:  356 ANLVPIPTEFASLLDYQKTMSQLVLKEAVAGLQQESATKMSRGNVLMVRGEVETANLLDVDGENMGRKKGEGG---------EPSSASAPLPPPSVSSS----DGKLYSLRVKLILPTVPAYGNGKDYVPASPFRGQELVYLSSPRWRASSNALLGVVQAWDPVYDKLSRKPSTKTVVKIRILVCVSSTGGDGVGGRGGWLPFKDIQECLGNDN--CGVPVTISGAGSLVTACREFQAVMSLPELPERVHEFLVNPS---KASTTLLPRLFVINHLPV----PSSRGGREAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPPGPSGVPPKLWMSLIQKFNSSQVQAMRKVVDGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPSGHSSEGEVS--------GSGAKVTIGSSISG---------KGKGKKGKQKGQQKAARIVSPLEKASPRILIVAPSNAAVDELVLRLCQEGVPGVDGRVRFPRVVRVGGPRADDERSGDVDGRGG--------SGGGKDGMTSTVVE 887          
BLAST of mRNA_L-elsbetiae_contig14160.3093.1 vs. uniprot
Match: A0A8J2WTU9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTU9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.680e-14
Identity = 66/177 (37.29%), Postives = 88/177 (49.72%), Query Frame = 1
Query:  970 PNVPAKLWRSLLQVFNRSQVQAIRKVAEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGGGGXXXXXXXXAAAPRGPGARVMVGSSVAGGGVAGTEGGEGAEGKGKKXXXXXXKRIVSP---LEAA--TTRVLIVAPSNAAVDELVLRLCQDGIPSPEGGVRFPRVVRVG 1485
            P  PA LW++L    N SQ  AI   A+ +P  F L+QGPPGTGKTRTI+G+   LL G    PP              + RGPG   M+ S  +                          RI +P   L+AA  + R+L+ APSNAAVDE+  R  ++G+P P+G +R  R+ RVG
Sbjct:  206 PRTPAPLWQALRSSSNASQFAAIAAGADATP--FALVQGPPGTGKTRTILGVCAALLHGDLAEPP----------PPQRSRRGPG---MLSSQTS---------------------MRATTRINAPGGLLQAAERSRRILVTAPSNAAVDEVAARFVREGVPGPDGRIRRVRLCRVG 346          
BLAST of mRNA_L-elsbetiae_contig14160.3093.1 vs. uniprot
Match: A0A7S3MCA3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCA3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.090e-12
Identity = 113/413 (27.36%), Postives = 166/413 (40.19%), Query Frame = 1
Query:  400 GNELVALSSPTWTTATSSVLGVVQSWDPVYD-------------KLSKRPFGRD--------TVLIRLLVCASPGGG-DGAGGAGGWLPLGHARECLGRSKKVAGVPVTLSGGASLMTACREFQAVMSVSGLPEAVRRCLLDPSVVGKESRAAXXXXXXXXXXXXXREG---------PSWRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAWGSAP---PPNVPAKLWRSLLQVFNRSQVQAIRKVAEG------------SPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGGGGXXXXXXXXAAAPRGPGARVMVGSSVAG--GGVAGTEGGEGAEGKGKKXXXXXXKRIVSPLEAA--TTRVLIVAPSNAAVDELVLRLCQDGIPSPEGG-VRFPRVVRVG 1485
            G +L+ L SP W+     +LG++Q WDP YD              +S +   RD          ++ +LVC   G G  G+   GGW   G           V GV  +++   ++MT  RE QA+MS+  + ++++  +L        + A                G              XXXXXXX                        A    P   P NVP  LW +L + +N SQ++AI  V+              + +  +LLQGPPGTGKTRTI+GIV V LAG       G                   R++ G+S+ G   G A T+  +    + +         +    ++    TRVLI APSN AVDE+V RL   G+   +G  +    V+R+G
Sbjct:  320 GGDLMVLHSPQWS---HPLLGIIQPWDPDYDIKYGINFSVNQSTYISTQQPARDGGKLGQPPLQVVNILVCVDQGDGLSGSADIGGWATQGSI---------VPGVGFSMTAIGNVMTYIRECQALMSLKLINKSLQNMVLTGCFSPNYTAALRAATADQSAADGTSSGYGSSXXXXXXXXXXXXXXXXXDGGIAFASHKPRADKVNRVLSPRRALMEQPINCPENVPMPLWLALRRQYNESQLRAICMVSRRFQEKEYHTGQSTTEASLSLLQGPPGTGKTRTILGIVSVFLAGALNLTAQGT-----------------TRIVAGASLYGETAGEASTKWSDEKLQRPRGGSISHTNTVNGDGQSGGKRTRVLICAPSNTAVDEVVYRLITQGVLDSQGKRMNDLSVIRIG 703          
BLAST of mRNA_L-elsbetiae_contig14160.3093.1 vs. uniprot
Match: A0A1V9ZPB7_9STRA (ATP-dependent helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZPB7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.800e-11
Identity = 68/181 (37.57%), Postives = 89/181 (49.17%), Query Frame = 1
Query:  976 VPAKLWRSLLQVFNRSQVQAIRKVAEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGGGGXXXXXXXXAAAPRGPGARVMV---GSSVAGGGVA-----------GTEGGEGAEGKGKKXXXXXXK---RIVSPLEAA-----TTRVLIVAPSNAAVDELVLRLCQDGIPSPEG 1452
            +PA +W  L + +N SQ+Q++  +     +G +LLQGPPGTGKT+TIMGI+  LLA   P P               APR      +V   G+S  G   A           G +  EGA   GK       K   R VS L  A     +  +LI APSN AVDEL+LRL +DG+  P+G
Sbjct: 1355 LPAPVWSQLRETYNSSQLQSVHSILNNYTTGVSLLQGPPGTGKTKTIMGIISGLLAIALPTP-----------TLETAPRKAIKPALVDFSGTSSLGSVKASSIQQIKNASMGRQRLEGAM-AGKATFRPRPKPTARTVSVLPQAQRGHQSNHILICAPSNGAVDELILRLRKDGLIGPDG 1523          
BLAST of mRNA_L-elsbetiae_contig14160.3093.1 vs. uniprot
Match: A0A067CG60_SAPPC (TFIIS N-terminal domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CG60_SAPPC)

HSP 1 Score: 75.9 bits (185), Expect = 1.330e-10
Identity = 70/189 (37.04%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  958 SAPPPNVPAKLWRSLLQVFNRSQVQAIRKVAEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGGGGXXXXXXXXAAAPRGPGA-RVMVGSSVAGGGVAGTEGGEGAEGKGK---KXXXXXXKRIVSPLEAA-----TTRVLIVAPSNAAVDELVLRLCQDGIPSPEGG---VRFPRVVRVGG 1488
            S  P  +P  +W  L   +N SQ+Q++  +     +G +LLQGPPGTGKT+TIMGI+  LLA   P P             A+    PGA +      +   G++  +  EGA   G+   K       R VS L  A     T  +LI APSN AVDEL+LRL  DG+  P+G    V  P+V  V G
Sbjct: 1372 STTPLFLPPPVWDQLQTTYNASQLQSVHSILNNYSTGVSLLQGPPGTGKTKTIMGIISGLLAISLPTPTA---PALVDFSGASTSSLPGAVKATSIQQIKNKGMS-RQRLEGAM-AGRPMFKPRPASGPRTVSVLPIANKGPETNHILICAPSNGAVDELILRLRTDGLVGPDGKPVLVSTPKVHAVSG 1555          
BLAST of mRNA_L-elsbetiae_contig14160.3093.1 vs. uniprot
Match: A0A485KG19_9STRA (Aste57867_3966 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KG19_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.610e-9
Identity = 61/195 (31.28%), Postives = 88/195 (45.13%), Query Frame = 1
Query:  967 PPNVPAKLWRSLLQVFNRSQVQAIRKVAEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGGGGXXXXXXXXAAAPRGP-------------GARVMVGSSVAGGGVAGTEGGEGAEGKGKKXXXXXXKRIVSPL------EAATTRVLIVAPSNAAVDELVLRLCQDGIPSPEGG---VRFPRVVRVG 1485
            P  VP  LW  +  ++N+SQ+Q+I  V     +G +LLQGPPGTGKT+TI+G+V  LL+   P P              A    P             G + +VG+                  +G+       +R+  PL      ++ +  +LI APSN AVDEL+ RL  DG+  P G    V+ P + R G
Sbjct: 1384 PAFVPQALWDVVKPMYNQSQLQSIHSVLSNYDTGVSLLQGPPGTGKTKTILGLVSGLLSVELPTPAKLAPVNRPALNFNAQSDQPKRVSIQQIKNQQLGRQRLVGAM-----------------EGRSSRMGLIQRVSIPLGKSSMTKSQSNHILICAPSNGAVDELISRLLADGLVDPTGNKIRVKAPSIRRQG 1561          
BLAST of mRNA_L-elsbetiae_contig14160.3093.1 vs. uniprot
Match: A0A0M0J369_9EUKA (DNA2 nam7 helicase family protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J369_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 3.650e-9
Identity = 63/182 (34.62%), Postives = 84/182 (46.15%), Query Frame = 1
Query:  955 GSAPPPNV--PAKLWRSLLQVFNRSQVQAIRKVAEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGGGGXXXXXXXXAAAPRGPGARVMVGSSVAGGGVAGTEGGEGAEGKGKKXXXXXXKRIVSPLEAATTRVLIVAPSNAAVDELVLRLCQD---GIPSPEGGVRFPRVVRVG 1485
            GSAPPP +  P  LW ++    N SQ+ AIR    G   G TL+QGPPGTGKT+TI+GI+ VLLA                           A  +  S  +    +  + GEG +           + +    E     VL+ APSNAA+DE+V RL +    G+ +  G    P VVRVG
Sbjct:  226 GSAPPPRLQKPPSLWPAIKATHNPSQLAAIRTCLCGR--GVTLIQGPPGTGKTKTILGILSVLLASHS------------------------AHTLTKSERS----SWRDVGEGGDAASTDRHVHLGRAVA---EEPPKHVLVCAPSNAAIDEIVSRLLRHTGPGMLNARGESFLPYVVRVG 374          
BLAST of mRNA_L-elsbetiae_contig14160.3093.1 vs. uniprot
Match: W4GB66_9STRA (TFIIS N-terminal domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB66_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.870e-9
Identity = 58/171 (33.92%), Postives = 79/171 (46.20%), Query Frame = 1
Query:  976 VPAKLWRSLLQVFNRSQVQAIRKVAEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGGGGXXXXXXXXAAAPRGPGARVMVG------------SSVAGGGVAGTEGGEGAEGKGKKXXXXXXKRIVSPLEAATTRVLIVAPSNAAVDELVLRLCQDGIPSPEG 1452
            VP  LW  L  ++N SQ+Q+I  V     SG +LLQGPPGTGKT+TI+G+V  LLA     P                     +R  +             SSV    +AGT    G      +       +++S  +  +  +LI APSN AVDEL+ RL  DG+  P+G
Sbjct: 1434 VPQSLWDVLRPMYNSSQLQSIHSVLSNYESGVSLLQGPPGTGKTKTILGLVSGLLA--IQLPAAAKTQMPKPAMRFNVQSDAVSRTSIQQIKNQSLGRQRLSSV----MAGTSSRMGV----LQRVPLSSSKLLSEKKVQSNHILICAPSNGAVDELIARLVADGLVGPDG 1594          
BLAST of mRNA_L-elsbetiae_contig14160.3093.1 vs. uniprot
Match: A0A1E4THA5_9ASCO (UvrD-like helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4THA5_9ASCO)

HSP 1 Score: 70.1 bits (170), Expect = 6.270e-9
Identity = 56/167 (33.53%), Postives = 75/167 (44.91%), Query Frame = 1
Query:  997 SLLQVFNRSQVQAIRKVAEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGGGGXXXXXXXXAAAPRGPGARVMVGSSVAGGGVAGTEGGEGAEGKGKKXXXXXXKRIVSPLEAATT----RVLIVAPSNAAVDELVLRLCQDGIPSPEGGVRFPRVVRVG 1485
            +L +V   ++ QA    A  + SGFTL+QGPPGTGKT+TI+ IVG LL                                                  A+ KGK       +++ S  E        R+LI APSNAAVDELV+RL ++G+ S  G    PR+VR+G
Sbjct:  228 ALCKVHRCNEPQAAAVFAALNSSGFTLIQGPPGTGKTKTILSIVGSLLT-------------------------------------------------AQSKGKSIAIAGARKVSSADEKTAQKSKKRILICAPSNAAVDELVVRL-KNGLTSTAGQSISPRIVRLG 344          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14160.3093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE51_ECTSI5.890e-12150.93SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JS06_9PHAE2.600e-12050.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2WTU9_9STRA1.680e-1437.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3MCA3_9STRA1.090e-1227.36Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A1V9ZPB7_9STRA5.800e-1137.57ATP-dependent helicase n=1 Tax=Achlya hypogyna Tax... [more]
A0A067CG60_SAPPC1.330e-1037.04TFIIS N-terminal domain-containing protein n=2 Tax... [more]
A0A485KG19_9STRA1.610e-931.28Aste57867_3966 protein n=1 Tax=Aphanomyces stellat... [more]
A0A0M0J369_9EUKA3.650e-934.62DNA2 nam7 helicase family protein n=1 Tax=Chrysoch... [more]
W4GB66_9STRA4.870e-933.92TFIIS N-terminal domain-containing protein n=11 Ta... [more]
A0A1E4THA5_9ASCO6.270e-933.53UvrD-like helicase ATP-binding domain-containing p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14160contigL-elsbetiae_contig14160:238..4166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score400.2
Seed ortholog evalue1.5e-108
Seed eggNOG ortholog2880.D8LE51
KEGG koko:K10706
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
EggNOG OGsCOG1112@1,KOG1801@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Ec32 ortholog descriptionSEN1 protein
Ec32 orthologEc-00_000970.1
Exons5
Model size1602
Cds size1602
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14160.3093.1prot_L-elsbetiae_contig14160.3093.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14160 238..4166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.0480816-CDS-L-elsbetiae_contig14160:237..3871622815563.0480816-CDS-L-elsbetiae_contig14160:237..387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14160 238..387 +
1691682961.5387309-CDS-L-elsbetiae_contig14160:237..3871691682961.5387309-CDS-L-elsbetiae_contig14160:237..387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14160 238..387 +
1622815563.0620499-CDS-L-elsbetiae_contig14160:1417..15971622815563.0620499-CDS-L-elsbetiae_contig14160:1417..1597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14160 1418..1597 +
1691682961.551325-CDS-L-elsbetiae_contig14160:1417..15971691682961.551325-CDS-L-elsbetiae_contig14160:1417..1597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14160 1418..1597 +
1622815563.0733507-CDS-L-elsbetiae_contig14160:1779..22961622815563.0733507-CDS-L-elsbetiae_contig14160:1779..2296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14160 1780..2296 +
1691682961.5605927-CDS-L-elsbetiae_contig14160:1779..22961691682961.5605927-CDS-L-elsbetiae_contig14160:1779..2296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14160 1780..2296 +
1622815563.0852997-CDS-L-elsbetiae_contig14160:2371..26071622815563.0852997-CDS-L-elsbetiae_contig14160:2371..2607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14160 2372..2607 +
1691682961.5725687-CDS-L-elsbetiae_contig14160:2371..26071691682961.5725687-CDS-L-elsbetiae_contig14160:2371..2607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14160 2372..2607 +
1622815563.0979424-CDS-L-elsbetiae_contig14160:3647..41661622815563.0979424-CDS-L-elsbetiae_contig14160:3647..4166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14160 3648..4166 +
1691682961.5805871-CDS-L-elsbetiae_contig14160:3647..41661691682961.5805871-CDS-L-elsbetiae_contig14160:3647..4166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14160 3648..4166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14160.3093.1

>prot_L-elsbetiae_contig14160.3093.1 ID=prot_L-elsbetiae_contig14160.3093.1|Name=mRNA_L-elsbetiae_contig14160.3093.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=534bp
QANLDVVPTEFAALLDYQRIMSQLVLKEALAGVQEARDASRSRSLSVKGE
IYAACLLDVDDESNGGKQGKKGGKGKGKGKGKQTPCSSPYSPPPSSSSSS
PGDGKLYSLKVKPGPPPPPPGHHRDQAPKSPFWGNELVALSSPTWTTATS
SVLGVVQSWDPVYDKLSKRPFGRDTVLIRLLVCASPGGGDGAGGAGGWLP
LGHARECLGRSKKVAGVPVTLSGGASLMTACREFQAVMSVSGLPEAVRRC
LLDPSVVGKESRAAAAAAAAAAAAANTREGPSWRGGGGAGAGAARGEGGG
GRGGGAGAGADADAAEAWGSAPPPNVPAKLWRSLLQVFNRSQVQAIRKVA
EGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGGGGGVGGGVGG
AAAPRGPGARVMVGSSVAGGGVAGTEGGEGAEGKGKKKGKKKGKRIVSPL
EAATTRVLIVAPSNAAVDELVLRLCQDGIPSPEGGVRFPRVVRVGGGRVD
RDADGEGGGGGGGVGGGRGTNGGGKDGLRSEVVE
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mRNA from alignment at L-elsbetiae_contig14160:238..4166+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14160.3093.1 ID=mRNA_L-elsbetiae_contig14160.3093.1|Name=mRNA_L-elsbetiae_contig14160.3093.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3929bp|location=Sequence derived from alignment at L-elsbetiae_contig14160:238..4166+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCCAACCTCGACGTGGTGCCGACCGAGTTCGCCGCCCTCCTCGACTA CCAGAGGATCATGTCCCAGCTCGTCCTAAAGGAGGCGCTCGCCGGCGTGC AGGAGGCCCGCGACGCCAGCCGGAGCAGGTCCCTGAGCGTGAAGGGGGAG GTGAGGGGCGAGGCGGGCAGGCAGGCTCGTCGGGGGCGGGACGTGTGTGG CTTGTTGTTGTGGGGTGCGAACGGGTGCGGGCGTGGGCGTGGGCGTGGGC GTGGGCGTGGGCGTGGGCGTGAAAGGCTCCTGTTTCCTGTTTGAGTCCTT TCTTTGGGTGCTGCCGCCTACGTACACACGGTTGAGTCCAAACAGGAGCC TTTCACACCCACGCCTGCACCCGCCCTTTCGGTGCTGGCCCACGTACATG TCTATAACCTGCAGCTCACGCAAGAGAGAGAGTGTGGGTGCTATTTACAT GTGTGCATGCATCGTGAGCCTCTGGGCGTGTCACGGAAGCGTCCGGCTGT TGGCTTGGGTTGTTGTGTGTCCGCCCATGGTGTGGTTGTTTGGTTGGCCC TTGGCGGCTGTGGAGCTGCTGCAGTGCTGAGGTTTCTCCGCCGCCGCCGC GAGCAGCTTAGCTTGTGTACAACAACGAGGAGATTTTCTCGATGTTGTCG GCCCAGCTGCAGCGCAACGCGCAGGCGTGTGGTGTTTTAAGTCCGGTTCT TGATTAAACAGTCACCATTTTCGCAAAGAAGCGTCTGCTCAGTGTCTATG GCCCCGAGACTCGAATCGGACGTACGTAGCTTCCGCCAGCTCGTTTTTAC GTGAGCGGCCGTGGTCTTCTACGCTTGTGATTTGTTTTTGTCATTTTGCG ACGGATTGCTGCTCGCTTCTCCTAACCTTTACAACCTAGGGCGCCACGTG TTGTGCTGATGCAGTATAGAGCACCACTACTGCTCCACTGCACTGCACTC CACTGCACTGCCGCACGCTGGTTGGCGTGAAAGGGCGAAGCTACAAATGC GTCCAATCCCTGACCCTGAAGATGAGCGCTTAAGCTTGGAAAACGATACG GCCACGAGCCCCCCTCTCTCAAAAGTGTGTGCCCCCTCTGCTCGTGTTTT TCGTATTTTTTATTTCCGCCGCGTGCTTGTTGTGCTAACGCCGCCGCCGC CGCCACCGCCGCCGCCCTCGGGCGGCGCAGATCTACGCCGCCTGTTTGCT GGACGTAGACGACGAGAGCAACGGAGGCAAGCAAGGCAAGAAAGGCGGAA AAGGCAAGGGCAAGGGCAAGGGCAAGCAGACCCCGTGCTCCTCCCCCTAC TCCCCCCCCCCCTCCTCCTCCTCGTCGTCCCCAGGCGACGGCAAGCTGTA CTCTCTCAAGGTCAAGCTCGAGCTACCCCCCCCCCCCCCCCCCCCCCCCC CGGGCCCGGGGCCCGGGGCGCCCTTCCGGGGGCCCGGGCGGGGGCGGCGG CGCACGCCCGACGGGGCCGNNNNNCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCTCCGCCCCCGGCGCCGGCCAGCTGTTCCCCCCCAAGGTCAAGCC CGGGCCCCCCCCCCCCCCCCCCGGCCACCACCGGGACCAGGCGCCGAAGT CGCCTTTCTGGGGCAACGAGCTGGTCGCGCTCAGCTCTCCGACGTGGACG ACGGCGACGTCGTCGGTGTTGGGGGTGGTGCAGTCGTGGGACCCGGTGTA CGACAAGCTGAGCAAGAGGCCCTTCGGCAGGGACACCGTGCTGATCAGGC TGCTGGTGTGCGCCAGCCCCGGCGGGGGCGACGGGGCCGGGGGGGCCGGC GGATGGCTGCCCCTCGGCCACGCGCGGGAGTGCCTGGGGAGGAGCAAGAA GGTCGCCGGGGTGCCCGTCACGCTGTCCGGCGGCGCGTCGCTGATGACGG CGTGCCGCGAGTTCCAGGCGGTCATGTCGGTGTCGGGGCTGCCCGAGGCC GTCCGCCGGTGCCTGCTGGACCCCTCCGTGGTGGGCAAGGAGTCGAGGGC AGCGGCGGCGGCGGCAGCGGCGGCGGCAGCGGCGGCGAACACGCGGGAAG GACCATCTTGTTTGTCTGGTACTTCTTCTTCTTCTTTTTGTTCCGACGGC CGAGCCGTAATCTCGAGCGGGCGTAGCGGGGAAGGGCGAGGAGGAGGAGG CGCTGGCGCTGGCGCTGCTCGCGGGGAGGGCGGTGGCGGCAGGGGCGGCG GCGCCGGTGCCGGTGCCGATGCCGATGCTGCGGAGGCCTGGGGTTCGGCG CCCCCGCCCAACGTGCCCGCCAAGCTGTGGCGGTCTCTGCTGCAGGTGTT CAACCGCTCTCAGGTGCAGGCCATCCGGAAGGTTGCCGAGGGCTCCCCGT CGGGCTTCACGCTCCTGCAGGTAAAGCACGGCAACAAGAGACTACTAAAT CGGGCTGGTGGACTGCTGTTTGTTGTCCGTGCTGTTTGCCGACTGCCGTC GTCCAGGCTTGCGGGGGGGGGGGGTGGAACCGACCAGCCCTCGCTACACT TTTGCGCTGCCGGGGGATGGTATGCAGATGATGTGTGGTGTGCGTGTAGT CTTACTCTCGTGTAGTTCGTTTTAGGGTCGATTCGCACAGCAGGGTGTAC AAAAAGCAGGAGAGCAATAGGGCGCTTGGATGGTGGGTTTCCAGAAACCA TCATGAAGCGCCATAAAGCACGAAGTTAAGTACTATCCGTGACTTTGCGG TGCACGTATACTTCTAGGTATACAAGCGCACCCCTTTTGGCCTTAATTCG CGTTTTCTCGCCTGAAACAGACGAAACGTACCCGCTACATATGTACAATA GCCCGTCCGAAATCAATCACCCGTCCGAAATTAATTACCCGTGCCTCGCG ATGTATACTTCGTATGTAGCATCCGTTTTTGCATTGCATTGCATTGCATT GCATTGCATTGCATTGCATTGCATTGCATTGCATTGCATTGCATTGCATT GCATTGCATTGCATTGCATTGCATTGCATTGCATTGCATTGATTCGCGTT TTCTCCTCGCTTGAAGCAGACGGAACGTACTTGCCATTTAGCCGAAGGAG ATGCCTCGCTCGCTCGCAGCACACTTCTGGGCGGGTCGCGCCGCATCGCG TGCTTCCTCTCCCGCTATTAAATACTCTGTCCGGAACTCATCCACCTCGG TGCTTTCGCTTGAACGGCTTATCGCGCCCGTCCGCCATGACGTCATCACC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCGCCCCCC CCCCCTCCCCTCCGCCGTCTGCTGTGCTGTTCGGTTGGGGCCCGCGGTTC CCGCTCTGACGTCCTGCTCTCTCCATATTCATTGGCACCTGCACGTATTA TATCTCTCCCCCTTTCCCTTTCCCTTTTCCCTTTTCCCGCTCTGCCGGCC CCCCCCTCAGGGTCCCCCGGGGACAGGAAAGACGCGCACGATCATGGGCA TTGTCGGGGTTCTGCTCGCGGGGGGCTGCCCCTTTCCCCCAGGCGGCGGC GGGGGTGTAGGAGGAGGGGTCGGAGGAGCTGCAGCCCCGAGGGGGCCGGG GGCGAGGGTGATGGTGGGCTCCTCCGTAGCCGGCGGCGGCGTCGCCGGCA CAGAGGGGGGGGAGGGGGCGGAGGGCAAGGGCAAGAAAAAGGGCAAGAAA AAAGGCAAGAGGATCGTTTCTCCGCTAGAGGCCGCCACAACGAGGGTGCT GATCGTGGCCCCCTCCAACGCCGCCGTGGACGAACTCGTGCTGCGGCTGT GCCAGGACGGCATCCCCAGCCCCGAAGGGGGGGTGCGCTTTCCGAGGGTG GTGAGGGTCGGCGGGGGCAGGGTGGACAGGGACGCGGATGGCGAGGGCGG CGGCGGCGGCGGCGGGGTGGGAGGGGGGAGGGGCACGAACGGAGGAGGCA AGGATGGGCTGCGATCGGAAGTGGTCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14160:238..4166+

>mRNA_L-elsbetiae_contig14160.3093.1 ID=mRNA_L-elsbetiae_contig14160.3093.1|Name=mRNA_L-elsbetiae_contig14160.3093.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3204bp|location=Sequence derived from alignment at L-elsbetiae_contig14160:238..4166+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCCAACCTCGACGTGGTGCCGACCGAGTTCGCCGCCCTCCTCGACTA
CCAGAGGATCATGTCCCAGCTCGTCCTAAAGGAGGCGCTCGCCGGCGTGC
AGGAGGCCCGCGACGCCAGCCGGAGCAGGTCCCTGAGCGTGAAGGGGGAG
CAGGCCAACCTCGACGTGGTGCCGACCGAGTTCGCCGCCCTCCTCGACTA
CCAGAGGATCATGTCCCAGCTCGTCCTAAAGGAGGCGCTCGCCGGCGTGC
AGGAGGCCCGCGACGCCAGCCGGAGCAGGTCCCTGAGCGTGAAGGGGGAG
ATCTACGCCGCCTGTTTGCTGGACGTAGACGACGAGAGCAACGGAGGCAA
GCAAGGCAAGAAAGGCGGAAAAGGCAAGGGCAAGGGCAAGGGCAAGCAGA
CCCCGTGCTCCTCCCCCTACTCCCCCCCCCCCTCCTCCTCCTCGTCGTCC
CCAGGCGACGGCAAGCTGTACTCTCTCAAGATCTACGCCGCCTGTTTGCT
GGACGTAGACGACGAGAGCAACGGAGGCAAGCAAGGCAAGAAAGGCGGAA
AAGGCAAGGGCAAGGGCAAGGGCAAGCAGACCCCGTGCTCCTCCCCCTAC
TCCCCCCCCCCCTCCTCCTCCTCGTCGTCCCCAGGCGACGGCAAGCTGTA
CTCTCTCAAGGTCAAGCCCGGGCCCCCCCCCCCCCCCCCCGGCCACCACC
GGGACCAGGCGCCGAAGTCGCCTTTCTGGGGCAACGAGCTGGTCGCGCTC
AGCTCTCCGACGTGGACGACGGCGACGTCGTCGGTGTTGGGGGTGGTGCA
GTCGTGGGACCCGGTGTACGACAAGCTGAGCAAGAGGCCCTTCGGCAGGG
ACACCGTGCTGATCAGGCTGCTGGTGTGCGCCAGCCCCGGCGGGGGCGAC
GGGGCCGGGGGGGCCGGCGGATGGCTGCCCCTCGGCCACGCGCGGGAGTG
CCTGGGGAGGAGCAAGAAGGTCGCCGGGGTGCCCGTCACGCTGTCCGGCG
GCGCGTCGCTGATGACGGCGTGCCGCGAGTTCCAGGCGGTCATGTCGGTG
TCGGGGCTGCCCGAGGCCGTCCGCCGGTGCCTGCTGGACCCCTCCGTGGT
GGGCAAGGAGTCGAGGGCAGCGGCGGCGGCGGCAGCGGCGGCGGCAGCGG
CGGCGAACACGCGGGAAGGACCATCTTGTCAAGCCCGGGCCCCCCCCCCC
CCCCCCCGGCCACCACCGGGACCAGGCGCCGAAGTCGCCTTTCTGGGGCA
ACGAGCTGGTCGCGCTCAGCTCTCCGACGTGGACGACGGCGACGTCGTCG
GTGTTGGGGGTGGTGCAGTCGTGGGACCCGGTGTACGACAAGCTGAGCAA
GAGGCCCTTCGGCAGGGACACCGTGCTGATCAGGCTGCTGGTGTGCGCCA
GCCCCGGCGGGGGCGACGGGGCCGGGGGGGCCGGCGGATGGCTGCCCCTC
GGCCACGCGCGGGAGTGCCTGGGGAGGAGCAAGAAGGTCGCCGGGGTGCC
CGTCACGCTGTCCGGCGGCGCGTCGCTGATGACGGCGTGCCGCGAGTTCC
AGGCGGTCATGTCGGTGTCGGGGCTGCCCGAGGCCGTCCGCCGGTGCCTG
CTGGACCCCTCCGTGGTGGGCAAGGAGTCGAGGGCAGCGGCGGCGGCGGC
AGCGGCGGCGGCAGCGGCGGCGAACACGCGGGAAGGACCATCTTGGCGAG
GAGGAGGAGGCGCTGGCGCTGGCGCTGCTCGCGGGGAGGGCGGTGGCGGC
AGGGGCGGCGGCGCCGGTGCCGGTGCCGATGCCGATGCTGCGGAGGCCTG
GGGTTCGGCGCCCCCGCCCAACGTGCCCGCCAAGCTGTGGCGGTCTCTGC
TGCAGGTGTTCAACCGCTCTCAGGTGCAGGCCATCCGGAAGGTTGCCGAG
GGCTCCCCGTCGGGCTTCACGCTCCTGCAGGGCGAGGAGGAGGAGGCGCT
GGCGCTGGCGCTGCTCGCGGGGAGGGCGGTGGCGGCAGGGGCGGCGGCGC
CGGTGCCGGTGCCGATGCCGATGCTGCGGAGGCCTGGGGTTCGGCGCCCC
CGCCCAACGTGCCCGCCAAGCTGTGGCGGTCTCTGCTGCAGGTGTTCAAC
CGCTCTCAGGTGCAGGCCATCCGGAAGGTTGCCGAGGGCTCCCCGTCGGG
CTTCACGCTCCTGCAGGGTCCCCCGGGGACAGGAAAGACGCGCACGATCA
TGGGCATTGTCGGGGTTCTGCTCGCGGGGGGCTGCCCCTTTCCCCCAGGC
GGCGGCGGGGGTGTAGGAGGAGGGGTCGGAGGAGCTGCAGCCCCGAGGGG
GCCGGGGGCGAGGGTGATGGTGGGCTCCTCCGTAGCCGGCGGCGGCGTCG
CCGGCACAGAGGGGGGGGAGGGGGCGGAGGGCAAGGGCAAGAAAAAGGGC
AAGAAAAAAGGCAAGAGGATCGTTTCTCCGCTAGAGGCCGCCACAACGAG
GGTGCTGATCGTGGCCCCCTCCAACGCCGCCGTGGACGAACTCGTGCTGC
GGCTGTGCCAGGACGGCATCCCCAGCCCCGAAGGGGGGGTGCGCTTTCCG
AGGGTGGTGAGGGTCGGCGGGGGCAGGGTGGACAGGGACGCGGATGGCGA
GGGCGGCGGCGGCGGCGGCGGGGTGGGAGGGGGGAGGGGCACGAACGGAG
GAGGCAAGGATGGGCTGCGATCGGAAGTGGTCGAGGGTCCCCCGGGGACA
GGAAAGACGCGCACGATCATGGGCATTGTCGGGGTTCTGCTCGCGGGGGG
CTGCCCCTTTCCCCCAGGCGGCGGCGGGGGTGTAGGAGGAGGGGTCGGAG
GAGCTGCAGCCCCGAGGGGGCCGGGGGCGAGGGTGATGGTGGGCTCCTCC
GTAGCCGGCGGCGGCGTCGCCGGCACAGAGGGGGGGGAGGGGGCGGAGGG
CAAGGGCAAGAAAAAGGGCAAGAAAAAAGGCAAGAGGATCGTTTCTCCGC
TAGAGGCCGCCACAACGAGGGTGCTGATCGTGGCCCCCTCCAACGCCGCC
GTGGACGAACTCGTGCTGCGGCTGTGCCAGGACGGCATCCCCAGCCCCGA
AGGGGGGGTGCGCTTTCCGAGGGTGGTGAGGGTCGGCGGGGGCAGGGTGG
ACAGGGACGCGGATGGCGAGGGCGGCGGCGGCGGCGGCGGGGTGGGAGGG
GGGAGGGGCACGAACGGAGGAGGCAAGGATGGGCTGCGATCGGAAGTGGT
CGAG
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