mRNA_L-elsbetiae_contig14144.3086.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14144.3086.1
Unique NamemRNA_L-elsbetiae_contig14144.3086.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14144.3086.1 vs. uniprot
Match: D8LFT7_ECTSI (Plastid phosphoglycerate mutase protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT7_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 2.270e-49
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 1
Query:    1 RYPARDLWERASKAWDQIRSLQSIQDQHRTLVVAHNAINQALLWTALGCDTSYFRKISWPNCAVLELQWRRGAERAERYRWVVPE 255
            RYPARDLW+RAS AWDQIRSLQSIQDQ RTLVVAHNAINQALLWTALGCDT+YFRK+SWPNCAVLELQWRRG  RAERYRWVVPE
Sbjct:  212 RYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPE 296          
BLAST of mRNA_L-elsbetiae_contig14144.3086.1 vs. uniprot
Match: Q00GN2_KARBR (Plastid phosphoglycerate mutase protein (Fragment) n=1 Tax=Karenia brevis TaxID=156230 RepID=Q00GN2_KARBR)

HSP 1 Score: 78.6 bits (192), Expect = 2.220e-15
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    4 YPARDLWERASKAWDQIRSLQSIQDQHR-----TLVVAHNAINQALLWTALGCDTSYFRKISWPNCAVLELQWRRGAERAERYRWVVP 252
            YP  +LW+RA +AW  IR+ +   D  R     TL+V HN I QAL ++A+G D SYFR++S+PN   LE  W  G   A R+RW +P
Sbjct:  222 YPLVELWQRAKEAWAAIRASE---DGKRDIDGVTLIVCHNGIGQALFFSAIGLDASYFRQLSFPNAGALECDWPLGELHASRWRWRLP 306          
BLAST of mRNA_L-elsbetiae_contig14144.3086.1 vs. uniprot
Match: A0A2J6K5X6_LACSA (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6K5X6_LACSA)

HSP 1 Score: 69.3 bits (168), Expect = 6.950e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    4 YPARDLWERASKAWDQIRSLQSIQDQHRTLVVAHNAINQALLWTALGCDTSYFRKISWPNCAVLELQW 207
            YP R+LWERAS  W++I     I D    LVVAHNA+NQAL+ TA+G  T YFR +   NC V  L +
Sbjct:  199 YPVRELWERASNCWNKI----LIHDSRSVLVVAHNAVNQALVATAMGLGTEYFRILLQSNCGVSVLDF 262          
BLAST of mRNA_L-elsbetiae_contig14144.3086.1 vs. uniprot
Match: UPI0007EF521C (LOW QUALITY PROTEIN: probable 2-carboxy-D-arabinitol-1-phosphatase n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF521C)

HSP 1 Score: 68.6 bits (166), Expect = 1.290e-11
Identity = 34/68 (50.00%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    4 YPARDLWERASKAWDQIRSLQSIQDQHRTLVVAHNAINQALLWTALGCDTSYFRKISWPNCAVLELQW 207
            YP R LWERA   WD+I     + D    LVVAHNA+NQAL+ TA+G  T YFR +   NC V  L +
Sbjct:  168 YPVRQLWERARNCWDKI----LLHDSRSVLVVAHNAVNQALIATAMGLGTEYFRVLLQSNCGVSVLDF 231          
BLAST of mRNA_L-elsbetiae_contig14144.3086.1 vs. uniprot
Match: A0A067KHA5_JATCU (Uncharacterized protein n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067KHA5_JATCU)

HSP 1 Score: 68.6 bits (166), Expect = 1.290e-11
Identity = 35/73 (47.95%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    4 YPARDLWERASKAWDQIRSLQSIQDQHRTLVVAHNAINQALLWTALGCDTSYFRKISWPNCAVLELQWRRGAE 222
            YP R+LW RA   W+QI     + +    LVVAHNA+NQAL+ TA+G  T YFR +   NC V  L +  GAE
Sbjct:  181 YPVRELWARARNCWNQI----LLHESRSVLVVAHNAVNQALVATAIGLGTEYFRILLQSNCGVSVLDFTPGAE 249          
BLAST of mRNA_L-elsbetiae_contig14144.3086.1 vs. uniprot
Match: A0A166C816_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166C816_DAUCS)

HSP 1 Score: 68.6 bits (166), Expect = 1.350e-11
Identity = 34/68 (50.00%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    4 YPARDLWERASKAWDQIRSLQSIQDQHRTLVVAHNAINQALLWTALGCDTSYFRKISWPNCAVLELQW 207
            YP R LWERA   WD+I     + D    LVVAHNA+NQAL+ TA+G  T YFR +   NC V  L +
Sbjct:  947 YPVRQLWERARNCWDKI----LLHDSRSVLVVAHNAVNQALIATAMGLGTEYFRVLLQSNCGVSVLDF 1010          
BLAST of mRNA_L-elsbetiae_contig14144.3086.1 vs. uniprot
Match: A0A803M654_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803M654_CHEQI)

HSP 1 Score: 67.8 bits (164), Expect = 2.410e-11
Identity = 37/78 (47.44%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    4 YPARDLWERASKAWDQIRSLQSIQDQHRTLVVAHNAINQALLWTALGCDTSYFRKISWPNCAVLELQWRRGAERAERY 237
            YP R+LW RA   WD+I + QS    +  LVVAHNA+NQAL+ TA+G  T YFR +   NC V  L +   AE    Y
Sbjct:  179 YPVRELWTRARSCWDRILAHQS----NSVLVVAHNAVNQALVATAIGLGTEYFRVLLQSNCGVSVLDFIPQAENKSPY 252          
BLAST of mRNA_L-elsbetiae_contig14144.3086.1 vs. uniprot
Match: A0A7C9CGL9_OPUST (2-carboxy-D-arabinitol-1-phosphatase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9CGL9_OPUST)

HSP 1 Score: 67.8 bits (164), Expect = 2.420e-11
Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    4 YPARDLWERASKAWDQIRSLQSIQDQHRTLVVAHNAINQALLWTALGCDTSYFRKISWPNCAVLELQWRRGAERAERY 237
            YP R+LW RA   WD+I + QS       LVVAHNA+NQAL+ TA+G  T YFR +   NC V  L +   AE    Y
Sbjct:  197 YPVRELWARARNCWDRILAYQS----KSVLVVAHNAVNQALIATAIGLGTEYFRVLLQSNCGVSVLDFIPRAEGGSPY 270          
BLAST of mRNA_L-elsbetiae_contig14144.3086.1 vs. uniprot
Match: UPI001CB8FD64 (probable 2-carboxy-D-arabinitol-1-phosphatase n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8FD64)

HSP 1 Score: 67.4 bits (163), Expect = 3.310e-11
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    4 YPARDLWERASKAWDQIRSLQSIQDQHRTLVVAHNAINQALLWTALGCDTSYFRKISWPNCAVLELQW 207
            YP R+LW+RAS  W +I     + D    LVVAHNA+NQAL+ TA+G  T YFR +   NC V  L +
Sbjct:  197 YPVRELWDRASSCWQKI----LVHDSRSVLVVAHNAVNQALVATAMGLGTEYFRILLQSNCGVSVLDF 260          
BLAST of mRNA_L-elsbetiae_contig14144.3086.1 vs. uniprot
Match: A0A059AAS2_EUCGR (Uncharacterized protein n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059AAS2_EUCGR)

HSP 1 Score: 67.4 bits (163), Expect = 3.340e-11
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    4 YPARDLWERASKAWDQIRSLQSIQDQHRTLVVAHNAINQALLWTALGCDTSYFRKISWPNCAVLELQWRRGAE 222
            YP R+LW+RA   W++I + +S       LVVAHNA+NQAL+ TA+G  T YFR +   NC V  L +  GAE
Sbjct:  282 YPVRELWQRARDCWNKILAHES----RSVLVVAHNAVNQALVATAIGLGTEYFRILLQSNCGVSVLDFTPGAE 350          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14144.3086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFT7_ECTSI2.270e-4991.76Plastid phosphoglycerate mutase protein n=2 Tax=Ec... [more]
Q00GN2_KARBR2.220e-1545.45Plastid phosphoglycerate mutase protein (Fragment)... [more]
A0A2J6K5X6_LACSA6.950e-1251.47Uncharacterized protein n=2 Tax=Lactuca TaxID=4235... [more]
UPI0007EF521C1.290e-1150.00LOW QUALITY PROTEIN: probable 2-carboxy-D-arabinit... [more]
A0A067KHA5_JATCU1.290e-1147.95Uncharacterized protein n=2 Tax=Jatropha curcas Ta... [more]
A0A166C816_DAUCS1.350e-1150.00Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A803M654_CHEQI2.410e-1147.44Uncharacterized protein n=2 Tax=Chenopodium quinoa... [more]
A0A7C9CGL9_OPUST2.420e-1147.442-carboxy-D-arabinitol-1-phosphatase n=1 Tax=Opunt... [more]
UPI001CB8FD643.310e-1148.53probable 2-carboxy-D-arabinitol-1-phosphatase n=1 ... [more]
A0A059AAS2_EUCGR3.340e-1147.95Uncharacterized protein n=1 Tax=Eucalyptus grandis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14144contigL-elsbetiae_contig14144:4372..4626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue3.1e-40
Seed eggNOG ortholog2880.D8LFT7
KEGG koko:K22200
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0047538
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
EC3.1.3.63
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Ec32 ortholog descriptionplastid phosphoglycerate mutase protein precursor
Ec32 orthologEc-01_000980.1
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.3118405-CDS-L-elsbetiae_contig14144:4371..46261622815562.3118405-CDS-L-elsbetiae_contig14144:4371..4626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14144 4372..4626 -
1691682961.0998344-CDS-L-elsbetiae_contig14144:4371..46261691682961.0998344-CDS-L-elsbetiae_contig14144:4371..4626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14144 4372..4626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14144.3086.1prot_L-elsbetiae_contig14144.3086.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14144 4372..4626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14144.3086.1

>prot_L-elsbetiae_contig14144.3086.1 ID=prot_L-elsbetiae_contig14144.3086.1|Name=mRNA_L-elsbetiae_contig14144.3086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
RYPARDLWERASKAWDQIRSLQSIQDQHRTLVVAHNAINQALLWTALGCD
TSYFRKISWPNCAVLELQWRRGAERAERYRWVVPE
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mRNA from alignment at L-elsbetiae_contig14144:4372..4626-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14144.3086.1 ID=mRNA_L-elsbetiae_contig14144.3086.1|Name=mRNA_L-elsbetiae_contig14144.3086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=255bp|location=Sequence derived from alignment at L-elsbetiae_contig14144:4372..4626- (Laminarionema elsbetiae ELsaHSoW15)
AGGTACCCCGCGAGAGACCTCTGGGAAAGGGCCAGCAAGGCGTGGGACCA GATCCGGTCCCTCCAGTCCATCCAGGACCAGCACCGAACCCTCGTCGTCG CGCACAACGCCATCAACCAGGCCCTGCTGTGGACCGCGCTCGGCTGCGAC ACCTCGTACTTCCGAAAGATCTCGTGGCCCAACTGCGCGGTGCTCGAGCT GCAGTGGCGGCGCGGCGCGGAGAGGGCCGAGCGGTACCGGTGGGTGGTGC CCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14144:4372..4626-

>mRNA_L-elsbetiae_contig14144.3086.1 ID=mRNA_L-elsbetiae_contig14144.3086.1|Name=mRNA_L-elsbetiae_contig14144.3086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig14144:4372..4626- (Laminarionema elsbetiae ELsaHSoW15)
AGGTACCCCGCGAGAGACCTCTGGGAAAGGGCCAGCAAGGCGTGGGACCA
GATCCGGTCCCTCCAGTCCATCCAGGACCAGCACCGAACCCTCGTCGTCG
CGCACAACGCCATCAACCAGGCCCTGCTGTGGACCGCGCTCGGCTGCGAC
ACCTCGTACTTCCGAAAGATCTCGTGGCCCAACTGCGCGGTGCTCGAGCT
GCAGTGGCGGCGCGGCGCGGAGAGGGCCGAGCGGTACCGGTGGGTGGTGC
CCGAGAGGTACCCCGCGAGAGACCTCTGGGAAAGGGCCAGCAAGGCGTGG
GACCAGATCCGGTCCCTCCAGTCCATCCAGGACCAGCACCGAACCCTCGT
CGTCGCGCACAACGCCATCAACCAGGCCCTGCTGTGGACCGCGCTCGGCT
GCGACACCTCGTACTTCCGAAAGATCTCGTGGCCCAACTGCGCGGTGCTC
GAGCTGCAGTGGCGGCGCGGCGCGGAGAGGGCCGAGCGGTACCGGTGGGT
GGTGCCCGAG
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