mRNA_L-elsbetiae_contig14139.3084.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14139.3084.1
Unique NamemRNA_L-elsbetiae_contig14139.3084.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14139.3084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14139contigL-elsbetiae_contig14139:1551..4341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1364
Cds size969
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14139.3084.1prot_L-elsbetiae_contig14139.3084.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14139 1920..4315 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.811055-UTR-L-elsbetiae_contig14139:1550..19191622815561.811055-UTR-L-elsbetiae_contig14139:1550..1919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14139 1551..1919 -
1691682960.768103-UTR-L-elsbetiae_contig14139:1550..19191691682960.768103-UTR-L-elsbetiae_contig14139:1550..1919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14139 1551..1919 -
1622815561.8619313-UTR-L-elsbetiae_contig14139:4315..43411622815561.8619313-UTR-L-elsbetiae_contig14139:4315..4341Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14139 4316..4341 -
1691682960.8168097-UTR-L-elsbetiae_contig14139:4315..43411691682960.8168097-UTR-L-elsbetiae_contig14139:4315..4341Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14139 4316..4341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.826723-CDS-L-elsbetiae_contig14139:1919..19401622815561.826723-CDS-L-elsbetiae_contig14139:1919..1940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14139 1920..1940 -
1691682960.7782288-CDS-L-elsbetiae_contig14139:1919..19401691682960.7782288-CDS-L-elsbetiae_contig14139:1919..1940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14139 1920..1940 -
1622815561.8391454-CDS-L-elsbetiae_contig14139:2473..25711622815561.8391454-CDS-L-elsbetiae_contig14139:2473..2571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14139 2474..2571 -
1691682960.7941372-CDS-L-elsbetiae_contig14139:2473..25711691682960.7941372-CDS-L-elsbetiae_contig14139:2473..2571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14139 2474..2571 -
1622815561.8520195-CDS-L-elsbetiae_contig14139:3465..43151622815561.8520195-CDS-L-elsbetiae_contig14139:3465..4315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14139 3466..4315 -
1691682960.8045943-CDS-L-elsbetiae_contig14139:3465..43151691682960.8045943-CDS-L-elsbetiae_contig14139:3465..4315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14139 3466..4315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14139.3084.1

>prot_L-elsbetiae_contig14139.3084.1 ID=prot_L-elsbetiae_contig14139.3084.1|Name=mRNA_L-elsbetiae_contig14139.3084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=323bp
MVDVVHKRCAHHGCTKHPYFGVEGSKLAGFCSAHKKDGMMDVINKRCAHR
GCTKRPYFGVEGSKLAELCSEHKKDGMVDVVHKRCIRPGCTKLPSYGVAG
SRTRKCCARHADEGMVNLGKFSRGSSGVGIRASEFGRDRSAGSQLAAAEK
QRRNCSSSLSSPAEVSSASSNSSSSSSRGGGSRGARQIPTDEPAPPSPLG
TAEDEGSVPREDDHSSKAQGDVAVKTEVTVPSKVDPNEDPPGGAAGAAGG
MPPFEQAVPFSEPESSVKPEVGYSFPSRGKGTGGVGGPSEDAAGSHPRGR
RGAAEEGREEGQRRVKRSRRGQ*
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mRNA from alignment at L-elsbetiae_contig14139:1551..4341-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14139.3084.1 ID=mRNA_L-elsbetiae_contig14139.3084.1|Name=mRNA_L-elsbetiae_contig14139.3084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2791bp|location=Sequence derived from alignment at L-elsbetiae_contig14139:1551..4341- (Laminarionema elsbetiae ELsaHSoW15)
TGTGCTCTGAACACAAGAAGGACGGGATGGTAGATGTCGTCCACAAGAGG
TGTGCCCACCATGGCTGCACCAAACACCCGTATTTCGGTGTGGAGGGGAG
CAAGCTCGCGGGGTTCTGCTCTGCACACAAGAAGGACGGGATGATGGATG
TCATCAACAAGAGGTGTGCCCACCGTGGCTGCACCAAGCGGCCGTATTTC
GGTGTGGAGGGGAGCAAGCTCGCGGAGTTGTGCTCTGAACACAAGAAGGA
CGGGATGGTTGATGTCGTCCACAAGAGGTGTATCCGCCCAGGGTGCACCA
AGCTACCATCCTACGGCGTGGCAGGGAGTCGAACGAGAAAGTGCTGTGCC
CGGCACGCAGACGAAGGAATGGTCAACCTTGGCAAATTCAGCCGTGGGTC
AAGCGGTGTTGGTATAAGGGCCAGCGAGTTCGGGCGTGACAGATCAGCAG
GGTCACAGCTTGCCGCCGCGGAAAAACAGCGGAGGAACTGCTCGTCCTCT
TTGTCCAGCCCGGCAGAGGTATCCTCAGCCAGCAGCAACAGCAGCAGCAG
CAGCAGCAGGGGGGGGGGCAGCAGGGGTGCCCGCCAGATCCCCACCGACG
AACCGGCGCCTCCATCCCCGTTAGGAACAGCCGAAGACGAAGGGTCTGTC
CCAAGAGAAGACGACCATTCTTCGAAGGCACAAGGAGACGTTGCGGTGAA
GACGGAAGTGACGGTCCCCTCGAAAGTGGACCCCAACGAAGACCCCCCCG
GAGGAGCAGCGGGAGCAGCAGGAGGAATGCCCCCCTTCGAGCAAGCTGTT
CCATTCTCGGAGCCAGAGTCATCGGTGAAGCCGGAAGTGGGGTACTCTTT
CCCGTCAAGGGGCAAGGGAACTGGAGGTGAGCAAGCACTGTTTTTCCTTT
CCTGGCTGGAAGTTTGGTTGGTGTGGTCTACAGCCTTCACTGCCGGCAGG
AACCGCTGGTCTAGACCTGGCACGCTCTTTTGTATTCTGGCTGTCGTGTA
GGCATGTCTGCCGACTGTAACATGTCACCGTCGGTATCACCAGTCTCATA
TCCTTTGCACGTACTCCCTGCGGCACCACGGATGGGAACTATCACAGATG
ATAGCTTAGCTCTCGGCCCAAATGATCTAGAACCGTGGGCACACGCCGGC
ATCCCCCCGCATGCTTTTTGTCGTTGGGGAAATTGCCATGTCACGTTCAA
CTTGTGTGTCCGTTCGTGTCCCGTTTAATGTCGTATTGACTTCCAACTTT
CCTGATGGCTCGTTCGAGTCTTACATGATGCGAAATTGTACCCCGTCCTT
ACTCCCGACGGTTTACGACCGAACATGTTGGTGCCACATCTCTTATGCAC
ATCTCTTATGCACATCTCTTCAGTGTCGCTGCGAGGCCCCGAGTAGTACA
GGCACTCTCGAAACGTTTTTGTTCTGTGCACACGTGGAGACGTCCAGACC
CCCGACTGCGACCCGGCTCATAACCACACCAAAACCAGCTAACTCATGGT
ATTCAGTTCGCTGCTGATTTCTCTAGCGCTCGGGGTTCTTCCGCTCCTCC
GCGCTGTTTTGCTGTTTTGCTTACGTGTCTAGCGGCACGATGCCTTGACG
ACAGACGATCAGATCGTTCCCGGCTGAACTCACCACCCTCAAGGTCGGCG
GTAGAGTCGTTCATTAATTTCGTAATGTATCTCCCCTGCATCCCTCAAGC
GATCGCCGACCAACGCTGCTGTTTTGCGCCGTTTTGGTTCCGTGGGTCGT
CCCTCCCCTTTTGGGTGCAGGTGTCGGCGGCCCTAGTGAAGACGCTGCAG
GGAGCCATCCTCGAGGGCGGCGCGGAGCGGCTGAAGAAGGGCGCGAAGAG
GGCCAAAGACGGGTCAAGGTGAGGAACGCCAGCTGCGCTGCGGATGATGG
TACTGCCTGTGTAGTCTTGCTGGTTGCTGACTTGTGTTTGCGCGTAGATG
GCTGCTCGTGGGCGCTGCCCGGGGCATATAGAGCCATCCACCAGCGGATG
TCGGCGCCGGATCCAAGAGAATATATCTCGCGCCGCACAGTTTTTTATCG
TGTGCCGGTGAATTGCGCATGGCATGGTGTTCGATGTGTTTTCATGGTAC
GGCGGTGTCAATTGTTCTGGGCAAGATTGGATTGGTTTGTCGTTTTATAC
CTGCATATTCGGTTTCACATGGCTGCTTGTTGCTTTGGTTGCCGCTCGCT
AAACTCTCTTGGCGGACCTACCCCGCTGGAAAAATATGCAGACCACTCGC
TTCACCACGCCACACTGACACTGGAAGGAAGATGCGATTTGAGAACGGAT
AGTCGGCACGATTTGCACGCCACTGCCTGCGACCGTTTTAACTTGTTCTA
ACGTCGTGTTTACCACTCCACCTCCCGTTTGTATTGATGTCTTTTTCGAA
GCGCTCTCGACGAGGCCAATGACGTGCCAGACGGGGCGACGTAAAGAGAG
AGGGACGTGGGGTCTTGGCAAGGTCGCCAAGGTTGCAGGACCGAAGATAA
GGCAAGACGTTGCCGGAGATGTCACGGTATCGTCATGAGGGCATGTGATT
TTATTGGTGGGGATGGAGTATTTCTTGTCTTTTGGGTTATTGTTTGACCT
TGACTTGCTGTGTTTGTGTCGTCTTAGGGTGACTACTGCAGCTGCATCGG
AGATGCTTCAAACGTTGTGAGTATGACGCGTTCAAGGACTTGTCAAGCAG
GTTTTCTGCTCTGAACATCTTGCCGGGACCGAAGTCCCGCTACGTAAACG
TAGCGCACGCTGGCATTTTGGTGGCGCAGATACCATCTCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14139:1551..4341-

>mRNA_L-elsbetiae_contig14139.3084.1 ID=mRNA_L-elsbetiae_contig14139.3084.1|Name=mRNA_L-elsbetiae_contig14139.3084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1938bp|location=Sequence derived from alignment at L-elsbetiae_contig14139:1551..4341- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAGATGTCGTCCACAAGAGGTGTGCCCACCATGGCTGCACCAAACA
CCCGTATTTCGGTGTGGAGGGGAGCAAGCTCGCGGGGTTCTGCTCTGCAC
ACAAGAAGGACGGGATGATGGATGTCATCAACAAGAGGTGTGCCCACCGT
GGCTGCACCAAGCGGCCGTATTTCGGTGTGGAGGGGAGCAAGCTCGCGGA
GTTGTGCTCTGAACACAAGAAGGACGGGATGGTTGATGTCGTCCACAAGA
GGTGTATCCGCCCAGGGTGCACCAAGCTACCATCCTACGGCGTGGCAGGG
AGTCGAACGAGAAAGTGCTGTGCCCGGCACGCAGACGAAGGAATGGTCAA
CCTTGGCAAATTCAGCCGTGGGTCAAGCGGTGTTGGTATAAGGGCCAGCG
AGTTCGGGCGTGACAGATCAGCAGGGTCACAGCTTGCCGCCGCGGAAAAA
CAGCGGAGGAACTGCTCGTCCTCTTTGTCCAGCCCGGCAGAGGTATCCTC
AGCCAGCAGCAACAGCAGCAGCAGCAGCAGCAGGGGGGGGGGCAGCAGGG
GTGCCCGCCAGATCCCCACCGACGAACCGGCGCCTCCATCCCCGTTAGGA
ACAGCCGAAGACGAAGGGTCTGTCCCAAGAGAAGACGACCATTCTTCGAA
GGCACAAGGAGACGTTGCGGTGAAGACGGAAGTGACGGTCCCCTCGAAAG
TGGACCCCAACGAAGACCCCCCCGGAGGAGCAGCGGGAGCAGCAGGAGGA
ATGCCCCCCTTCGAGCAAGCTGTTCCATTCTCGGAGCCAGAGTCATCGGT
GAAGCCGGAAGTGGGGTACTCTTTCCCGTCAAGGGGCAAGGGAACTGGAG
ATGGTAGATGTCGTCCACAAGAGGTGTGCCCACCATGGCTGCACCAAACA
CCCGTATTTCGGTGTGGAGGGGAGCAAGCTCGCGGGGTTCTGCTCTGCAC
ACAAGAAGGACGGGATGATGGATGTCATCAACAAGAGGTGTGCCCACCGT
GGCTGCACCAAGCGGCCGTATTTCGGTGTGGAGGGGAGCAAGCTCGCGGA
GTTGTGCTCTGAACACAAGAAGGACGGGATGGTTGATGTCGTCCACAAGA
GGTGTATCCGCCCAGGGTGCACCAAGCTACCATCCTACGGCGTGGCAGGG
AGTCGAACGAGAAAGTGCTGTGCCCGGCACGCAGACGAAGGAATGGTCAA
CCTTGGCAAATTCAGCCGTGGGTCAAGCGGTGTTGGTATAAGGGCCAGCG
AGTTCGGGCGTGACAGATCAGCAGGGTCACAGCTTGCCGCCGCGGAAAAA
CAGCGGAGGAACTGCTCGTCCTCTTTGTCCAGCCCGGCAGAGGTATCCTC
AGCCAGCAGCAACAGCAGCAGCAGCAGCAGCAGGGGGGGGGGCAGCAGGG
GTGCCCGCCAGATCCCCACCGACGAACCGGCGCCTCCATCCCCGTTAGGA
ACAGCCGAAGACGAAGGGTCTGTCCCAAGAGAAGACGACCATTCTTCGAA
GGCACAAGGAGACGTTGCGGTGAAGACGGAAGTGACGGTCCCCTCGAAAG
TGGACCCCAACGAAGACCCCCCCGGAGGAGCAGCGGGAGCAGCAGGAGGA
ATGCCCCCCTTCGAGCAAGCTGTTCCATTCTCGGAGCCAGAGTCATCGGT
GAAGCCGGAAGTGGGGTACTCTTTCCCGTCAAGGGGCAAGGGAACTGGAG
GTGTCGGCGGCCCTAGTGAAGACGCTGCAGGGAGCCATCCTCGAGGGCGG
CGCGGAGCGGCTGAAGAAGGGCGCGAAGAGGGCCAAAGACGGGTCAAGGT
GTCGGCGGCCCTAGTGAAGACGCTGCAGGGAGCCATCCTCGAGGGCGGCG
CGGAGCGGCTGAAGAAGGGCGCGAAGAGGGCCAAAGACGGGTCAAGCGCT
CTCGACGAGGCCAATGACGCTCTCGACGAGGCCAATGA
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