mRNA_L-elsbetiae_contig14130.3082.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14130.3082.1
Unique NamemRNA_L-elsbetiae_contig14130.3082.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14130.3082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14130contigL-elsbetiae_contig14130:696..1264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size569
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14130.3082.1prot_L-elsbetiae_contig14130.3082.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14130 778..1146 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.7094371-UTR-L-elsbetiae_contig14130:695..7771622815561.7094371-UTR-L-elsbetiae_contig14130:695..777Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14130 696..777 +
1691682960.7206397-UTR-L-elsbetiae_contig14130:695..7771691682960.7206397-UTR-L-elsbetiae_contig14130:695..777Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14130 696..777 +
1622815561.7311897-UTR-L-elsbetiae_contig14130:1146..12641622815561.7311897-UTR-L-elsbetiae_contig14130:1146..1264Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14130 1147..1264 +
1691682960.7402384-UTR-L-elsbetiae_contig14130:1146..12641691682960.7402384-UTR-L-elsbetiae_contig14130:1146..1264Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14130 1147..1264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.721343-CDS-L-elsbetiae_contig14130:777..11461622815561.721343-CDS-L-elsbetiae_contig14130:777..1146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14130 778..1146 +
1691682960.7319713-CDS-L-elsbetiae_contig14130:777..11461691682960.7319713-CDS-L-elsbetiae_contig14130:777..1146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14130 778..1146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14130.3082.1

>prot_L-elsbetiae_contig14130.3082.1 ID=prot_L-elsbetiae_contig14130.3082.1|Name=mRNA_L-elsbetiae_contig14130.3082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MTDRCHVVAVGAYSFVPAKPPTFREFPDDVFGFRPFMYGLSYPKRFPAGA
RPNRTKYYKRHRTADDASQQPFRHQPREANYPTLHRGEQDDAEPSHYLED
TSYSKRWLPGKNHALLSVLGQP*
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mRNA from alignment at L-elsbetiae_contig14130:696..1264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14130.3082.1 ID=mRNA_L-elsbetiae_contig14130.3082.1|Name=mRNA_L-elsbetiae_contig14130.3082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=569bp|location=Sequence derived from alignment at L-elsbetiae_contig14130:696..1264+ (Laminarionema elsbetiae ELsaHSoW15)
GCCATCACCGGTGTTGGACACGCGGAAATCAGCTGCAGAAACATAAACAT
TTTCACGGGCCCATGGAAATTCATCCTCGGAAATGACTGACCGGTGCCAT
GTTGTAGCGGTTGGCGCGTACTCTTTTGTACCAGCGAAGCCGCCCACTTT
CCGTGAATTTCCTGACGATGTTTTCGGATTTCGTCCGTTTATGTATGGGT
TGAGCTATCCAAAACGTTTTCCCGCGGGTGCTCGCCCCAATCGGACCAAA
TACTATAAACGCCATCGAACTGCCGATGACGCCTCCCAACAACCGTTCAG
GCACCAACCTCGAGAGGCAAACTATCCGACGCTGCATAGGGGCGAACAGG
ATGATGCTGAGCCTTCCCACTATTTAGAGGACACATCCTACAGCAAAAGG
TGGTTGCCAGGGAAGAATCACGCACTTCTCTCTGTCCTGGGACAACCATA
AAAACAGAAAATAGTATGCAATGTCGAGCTTTCCTGGCAAACGGAAACTG
CAGTACCATACAATACTATTAGTTTGTCGACAAAAAAATAACACAGACTA
TAAGCGGGATGCAAAGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14130:696..1264+

>mRNA_L-elsbetiae_contig14130.3082.1 ID=mRNA_L-elsbetiae_contig14130.3082.1|Name=mRNA_L-elsbetiae_contig14130.3082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig14130:696..1264+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTGACCGGTGCCATGTTGTAGCGGTTGGCGCGTACTCTTTTGTACC
AGCGAAGCCGCCCACTTTCCGTGAATTTCCTGACGATGTTTTCGGATTTC
GTCCGTTTATGTATGGGTTGAGCTATCCAAAACGTTTTCCCGCGGGTGCT
CGCCCCAATCGGACCAAATACTATAAACGCCATCGAACTGCCGATGACGC
CTCCCAACAACCGTTCAGGCACCAACCTCGAGAGGCAAACTATCCGACGC
TGCATAGGGGCGAACAGGATGATGCTGAGCCTTCCCACTATTTAGAGGAC
ACATCCTACAGCAAAAGGTGGTTGCCAGGGAAGAATCACGCACTTCTCTC
TGTCCTGGGACAACCATAAATGACTGACCGGTGCCATGTTGTAGCGGTTG
GCGCGTACTCTTTTGTACCAGCGAAGCCGCCCACTTTCCGTGAATTTCCT
GACGATGTTTTCGGATTTCGTCCGTTTATGTATGGGTTGAGCTATCCAAA
ACGTTTTCCCGCGGGTGCTCGCCCCAATCGGACCAAATACTATAAACGCC
ATCGAACTGCCGATGACGCCTCCCAACAACCGTTCAGGCACCAACCTCGA
GAGGCAAACTATCCGACGCTGCATAGGGGCGAACAGGATGATGCTGAGCC
TTCCCACTATTTAGAGGACACATCCTACAGCAAAAGGTGGTTGCCAGGGA
AGAATCACGCACTTCTCTCTGTCCTGGGACAACCATAA
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