mRNA_L-elsbetiae_contig14126.3076.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14126.3076.1
Unique NamemRNA_L-elsbetiae_contig14126.3076.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14126.3076.1 vs. uniprot
Match: A0A6H5KL36_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.210e-11
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  160 AGRAAASEEEKRAVGGGNREGCLLDVYREPEGNDWGELEDWQGLPGLQLAGGG 318
            AGRA A+E+     G G   G LLD YREPEGNDWGELEDW GLPGLQLA  G
Sbjct:  161 AGRAEAAEQ---GAGDGRIGGSLLDTYREPEGNDWGELEDWHGLPGLQLANAG 210
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BLAST of mRNA_L-elsbetiae_contig14126.3076.1 vs. uniprot
Match: D7FZY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.210e-11
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  160 AGRAAASEEEKRAVGGGNREGCLLDVYREPEGNDWGELEDWQGLPGLQLAGGG 318
            AGRA A+E+     G G   G LLD YREPEGNDWGELEDW GLPGLQLA  G
Sbjct:  292 AGRAEAAEQ---GAGDGRIGGSLLDAYREPEGNDWGELEDWHGLPGLQLANAG 341
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14126.3076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KL36_9PHAE1.210e-1167.92Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FZY2_ECTSI1.210e-1167.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14126contigL-elsbetiae_contig14126:3872..4190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.3756459-CDS-L-elsbetiae_contig14126:3871..41891622815561.3756459-CDS-L-elsbetiae_contig14126:3871..4189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14126 3872..4189 +
1691682960.5428603-CDS-L-elsbetiae_contig14126:3871..41891691682960.5428603-CDS-L-elsbetiae_contig14126:3871..4189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14126 3872..4189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14126.3076.1prot_L-elsbetiae_contig14126.3076.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14126 3872..4189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14126.3076.1

>prot_L-elsbetiae_contig14126.3076.1 ID=prot_L-elsbetiae_contig14126.3076.1|Name=mRNA_L-elsbetiae_contig14126.3076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
GLEVGSEAGLTVVTADETPAGTAGTAGTAGTAGTGASASALAREGRDCSG
EGAAGRAAASEEEKRAVGGGNREGCLLDVYREPEGNDWGELEDWQGLPGL
QLAGGG
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mRNA from alignment at L-elsbetiae_contig14126:3872..4190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14126.3076.1 ID=mRNA_L-elsbetiae_contig14126.3076.1|Name=mRNA_L-elsbetiae_contig14126.3076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=319bp|location=Sequence derived from alignment at L-elsbetiae_contig14126:3872..4190+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTTGGAAGTGGGATCGGAGGCGGGGCTGACCGTTGTCACAGCCGACGA
GACCCCCGCCGGCACCGCCGGCACCGCCGGCACCGCCGGCACCGCCGGCA
CCGGCGCCTCTGCGTCGGCGTTGGCGAGAGAGGGCCGGGATTGCAGCGGG
GAAGGAGCTGCGGGTAGAGCGGCCGCATCGGAGGAGGAAAAGCGGGCCGT
CGGCGGCGGAAACCGGGAAGGGTGTTTGCTCGACGTGTACCGAGAACCGG
AGGGGAACGATTGGGGAGAGCTGGAGGACTGGCAAGGGCTGCCGGGATTG
CAGCTGGCCGGTGGCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14126:3872..4190+

>mRNA_L-elsbetiae_contig14126.3076.1 ID=mRNA_L-elsbetiae_contig14126.3076.1|Name=mRNA_L-elsbetiae_contig14126.3076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig14126:3872..4190+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTTGGAAGTGGGATCGGAGGCGGGGCTGACCGTTGTCACAGCCGACGA
GACCCCCGCCGGCACCGCCGGCACCGCCGGCACCGCCGGCACCGCCGGCA
CCGGCGCCTCTGCGTCGGCGTTGGCGAGAGAGGGCCGGGATTGCAGCGGG
GAAGGAGCTGCGGGTAGAGCGGCCGCATCGGAGGAGGAAAAGCGGGCCGT
CGGCGGCGGAAACCGGGAAGGGTGTTTGCTCGACGTGTACCGAGAACCGG
AGGGGAACGATTGGGGAGAGCTGGAGGACTGGCAAGGGCTGCCGGGATTG
CAGCTGGCCGGTGGCGGCGGGTTGGAAGTGGGATCGGAGGCGGGGCTGAC
CGTTGTCACAGCCGACGAGACCCCCGCCGGCACCGCCGGCACCGCCGGCA
CCGCCGGCACCGCCGGCACCGGCGCCTCTGCGTCGGCGTTGGCGAGAGAG
GGCCGGGATTGCAGCGGGGAAGGAGCTGCGGGTAGAGCGGCCGCATCGGA
GGAGGAAAAGCGGGCCGTCGGCGGCGGAAACCGGGAAGGGTGTTTGCTCG
ACGTGTACCGAGAACCGGAGGGGAACGATTGGGGAGAGCTGGAGGACTGG
CAAGGGCTGCCGGGATTGCAGCTGGCCGGTGGCGGC
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