mRNA_L-elsbetiae_contig14101.3062.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: D7FYA2_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA2_ECTSI) HSP 1 Score: 248 bits (633), Expect = 8.020e-80 Identity = 141/223 (63.23%), Postives = 153/223 (68.61%), Query Frame = 1 Query: 1 MAPRQVFPYSDEGAGGLRPSPRQLLVDAVRG--KLADDTLSTSDDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLHDALNDXXXXXGEG-SVDLGSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKENM 660 MAPRQVFPY + G LR +PRQLL ++ + K + DL DALND XXXX S+DLG+ WASR+FVPK GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFAT +QANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGL+E+WSC YI QLLKE M Sbjct: 1 MAPRQVFPYHE--CGVLR-TPRQLLAESQQQQRKELESXXXEQHRQGEQWADIDKPSPFTPTFDESGSSGGEAACVQQPHCSDLRDALNDDXXXXXXXESLDLGAVWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKM 220
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A6H5K9D0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D0_9PHAE) HSP 1 Score: 241 bits (616), Expect = 1.640e-70 Identity = 138/222 (62.16%), Postives = 149/222 (67.12%), Query Frame = 1 Query: 1 MAPRQVFPYSDEGAGGLRPSPRQLLVDA--VRGKLADDTLSTSDDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLHDALNDXXXXXGEGSVDLGSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKENM 660 MAPRQVFPY + G LR +PRQLL ++ DL DAL D XXXX E S+DLG+ WASR+FVPK GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFAT +QAN AI+TMHRFEFKHGRFLGVLPSDENRTLFVGGL+E+WSC YI QLLKE M Sbjct: 1 MAPRQVFPYDE--CGVLR-TPRQLLAESQXXXXXXXXXXXXXXXHQREPWLDLDNPSPFTPTFDESGSSGGEAGCVQQPHSSDLRDALKDDXXXXXE-SLDLGTAWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANLAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKM 218
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A836CJD8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD8_9STRA) HSP 1 Score: 145 bits (365), Expect = 2.470e-36 Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 1 Query: 283 EGSVDLGSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKEN 657 EGS L P GVEIFVGGLTR++ +ML DWF H GE+TEVR+ARDKRRRRCRGYG+VRF +QAN AI+ M ++FK G +LG+LPSDENRTL+V G+ + WS + + N Sbjct: 214 EGSDHLSFCCGETPGSPPPGVEIFVGGLTRASSAEMLYDWFCHLGEITEVRVARDKRRRRCRGYGFVRFRNSEQANLAIEAMQGYQFKKGCYLGMLPSDENRTLYVSGMCQSWSQDQVHAYFSAN 338
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A836CKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV5_9STRA) HSP 1 Score: 128 bits (322), Expect = 1.550e-30 Identity = 66/125 (52.80%), Postives = 82/125 (65.60%), Query Frame = 1 Query: 331 PKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLG-------------------VLPSDENRTLFVGGLREDWSCEYISQLL 648 P GVEIFVGGLTRS+ R++L D F H G++TEVRIARDKRRRRCRGYG+VRF T +QAN A+++M F+FK G +L VLPSDENRTL+ G+ ED S + + L Sbjct: 151 PCPGVEIFVGGLTRSSTRELLYDCFSHIGDITEVRIARDKRRRRCRGYGFVRFRTSEQANMAVESMQAFQFKRGCYLSALLNAKKIAXXXXXXXXXXVLPSDENRTLYACGIEEDVSPDAVCWFL 275
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A803NB38_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NB38_CHEQI) HSP 1 Score: 89.4 bits (220), Expect = 5.190e-17 Identity = 49/125 (39.20%), Postives = 75/125 (60.00%), Query Frame = 1 Query: 280 GEGSVDLGSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 654 G G+ +L + A+++ K+ +EIFVGGL R D ++ F+ GEV EVR+ +D + RG+ +VRFAT DQA RA+ M + G+ G P+++N TLF+G + W+ E I Q LK+ Sbjct: 234 GSGAQELAA--AAKERKVKKELEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKD 355
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A7C9F016_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9F016_OPUST) HSP 1 Score: 88.6 bits (218), Expect = 1.070e-16 Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 313 ASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 654 A+++ K+ EIFVGGL R D L+ F+ GEV EVR+ +D + RG+ +VRFAT DQA RA+ M + G+ G P+++N TLFVG + W+ E I Q LK+ Sbjct: 324 AAKERRVKKEHEIFVGGLDREVVEDDLKKAFEKVGEVVEVRLLKDPLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFVGNICNTWTKEAIKQKLKD 436
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A803NC05_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NC05_CHEQI) HSP 1 Score: 88.2 bits (217), Expect = 1.550e-16 Identity = 46/114 (40.35%), Postives = 69/114 (60.53%), Query Frame = 1 Query: 313 ASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 654 A+++ K+ +EIFVGGL R D ++ F+ GEV EVR+ +D + RG+ +VRFAT DQA RA+ M + G+ G P+++N TLF+G + W+ E I Q LK+ Sbjct: 540 AAKERKVKKELEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKD 652
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: UPI00053FBE2C (nucleolin-like isoform X1 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FBE2C) HSP 1 Score: 87.8 bits (216), Expect = 2.010e-16 Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 313 ASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 654 A+++ K+ +EIFVGGL R D ++ F+ GEV EVR+ +D + RG+ +VRFAT DQA RA+ M G+ G P+++N TLF+G + W+ E I Q LKE Sbjct: 334 AAKERKVKKELEIFVGGLDREVVEDDVKTAFEKVGEVVEVRLLKDPSTNKNRGFAFVRFATKDQAKRALSEMKN-PVICGKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKE 446
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: UPI00087821D9 (nucleolin-like isoform X8 n=4 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00087821D9) HSP 1 Score: 87.0 bits (214), Expect = 3.870e-16 Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = 1 Query: 316 SRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 654 +++ + ++ +E+FVGGL R + L+ FQH GEV +VR+ R+ + +GY +V+FAT +QA+RA+ M R G+ G PS++N TLF+G + W+ E + Q LK+ Sbjct: 507 AKERMKRKELEVFVGGLDRDAVEEDLKRVFQHVGEVIDVRMHREVSTNKNKGYAFVKFATKEQASRALSEM-RNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAVRQKLKD 618
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A314LEQ0_NICAT (Nucleolin 2 n=18 Tax=Nicotiana TaxID=4085 RepID=A0A314LEQ0_NICAT) HSP 1 Score: 87.0 bits (214), Expect = 3.960e-16 Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = 1 Query: 316 SRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 654 +++ + ++ +E+FVGGL R + L+ FQH GEV +VR+ R+ + +GY +V+FAT +QA+RA+ M R G+ G PS++N TLF+G + W+ E + Q LK+ Sbjct: 662 AKERMKRKELEVFVGGLDRDAVEEDLKRVFQHVGEVIDVRMHREVSTNKNKGYAFVKFATKEQASRALSEM-RNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAVRQKLKD 773 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig14101.3062.1 >prot_L-elsbetiae_contig14101.3062.1 ID=prot_L-elsbetiae_contig14101.3062.1|Name=mRNA_L-elsbetiae_contig14101.3062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp MAPRQVFPYSDEGAGGLRPSPRQLLVDAVRGKLADDTLSTSDDNAPPFIAback to top mRNA from alignment at L-elsbetiae_contig14101:3468..4127- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig14101.3062.1 ID=mRNA_L-elsbetiae_contig14101.3062.1|Name=mRNA_L-elsbetiae_contig14101.3062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig14101:3468..4127- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig14101:3468..4127- >mRNA_L-elsbetiae_contig14101.3062.1 ID=mRNA_L-elsbetiae_contig14101.3062.1|Name=mRNA_L-elsbetiae_contig14101.3062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig14101:3468..4127- (Laminarionema elsbetiae ELsaHSoW15)back to top |