mRNA_L-elsbetiae_contig1410.3061.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1410.3061.1
Unique NamemRNA_L-elsbetiae_contig1410.3061.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1410.3061.1 vs. uniprot
Match: A0A7S0ARY5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ARY5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.440e-6
Identity = 25/71 (35.21%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 AWLERRLDLDRQAVSKIIWKEPALFRPSIDLLETKLVWLREGLALEEPDIARLVRSNPNVLSYSVEENLEP 213
            A L+ RL ++++A  ++      L   S + LETK+ WL+  L + +  + ++V+  P+VL+YS+E+NLEP
Sbjct:    3 ALLQERLGINKKAAGRLCLNANRLLTFSFETLETKIDWLQAKLKINKTQMRKIVKRAPHVLTYSIEDNLEP 73
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1410.3061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0ARY5_9STRA1.440e-635.21Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1410contigL-elsbetiae_contig1410:20323..24666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size699
Cds size696
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1410.3061.1prot_L-elsbetiae_contig1410.3061.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1410 20323..24664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.59598-CDS-L-elsbetiae_contig1410:20322..205071622815559.59598-CDS-L-elsbetiae_contig1410:20322..20507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 20323..20507 +
1691682959.440931-CDS-L-elsbetiae_contig1410:20322..205071691682959.440931-CDS-L-elsbetiae_contig1410:20322..20507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 20323..20507 +
1622815559.608854-CDS-L-elsbetiae_contig1410:21098..211681622815559.608854-CDS-L-elsbetiae_contig1410:21098..21168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 21099..21168 +
1691682959.4510434-CDS-L-elsbetiae_contig1410:21098..211681691682959.4510434-CDS-L-elsbetiae_contig1410:21098..21168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 21099..21168 +
1622815559.620227-CDS-L-elsbetiae_contig1410:22496..226281622815559.620227-CDS-L-elsbetiae_contig1410:22496..22628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 22497..22628 +
1691682959.462543-CDS-L-elsbetiae_contig1410:22496..226281691682959.462543-CDS-L-elsbetiae_contig1410:22496..22628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 22497..22628 +
1622815559.634726-CDS-L-elsbetiae_contig1410:24171..243021622815559.634726-CDS-L-elsbetiae_contig1410:24171..24302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 24172..24302 +
1691682959.4770262-CDS-L-elsbetiae_contig1410:24171..243021691682959.4770262-CDS-L-elsbetiae_contig1410:24171..24302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 24172..24302 +
1622815559.6533415-CDS-L-elsbetiae_contig1410:24486..246641622815559.6533415-CDS-L-elsbetiae_contig1410:24486..24664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 24487..24664 +
1691682959.4866695-CDS-L-elsbetiae_contig1410:24486..246641691682959.4866695-CDS-L-elsbetiae_contig1410:24486..24664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 24487..24664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1410.3061.1

>prot_L-elsbetiae_contig1410.3061.1 ID=prot_L-elsbetiae_contig1410.3061.1|Name=mRNA_L-elsbetiae_contig1410.3061.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=232bp
AWLERRLDLDRQAVSKIIWKEPALFRPSIDLLETKLVWLREGLALEEPDI
ARLVRSNPNVLSYSVEENLEPTVAWLQNRMKLDRKGVAAVVLSFPTILGL
NPETNIEPKLAWLKESLDLDEELVLRVVTAQPTVLKYSSKSNLGPTLDFF
GKELGGSREEIREAVVSNCRLLSASVTKRMIPRAAMIEKAGLGPPVFREH
VNAIASYTDLHFLKWLHSLVLEQGIPPRRKLT
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mRNA from alignment at L-elsbetiae_contig1410:20323..24666+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1410.3061.1 ID=mRNA_L-elsbetiae_contig1410.3061.1|Name=mRNA_L-elsbetiae_contig1410.3061.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4344bp|location=Sequence derived from alignment at L-elsbetiae_contig1410:20323..24666+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTGGCTGGAGAGGCGACTGGACTTGGATCGTCAGGCCGTGTCCAAGAT
TATATGGAAGGAGCCGGCACTTTTTCGGCCCTCCATCGACCTCCTGGAAA
CGAAGCTGGTGTGGCTGAGGGAGGGTCTGGCGCTGGAGGAGCCGGACATT
GCCCGCCTAGTCCGTAGTAACCCCAACGTTTTAAGGCAAGAATTAAAGAC
ACGACGGTTAAAAGATAAAAGTGTCACGGCGGGTTCTTTGCTTGTTGTCT
AGCTGGCGCTGTTTCTTTTTGCTTCCTGCGCAGGGTAGAACATGCGCGGG
TCGCAAGCATTACAAATATCGCGTAGAGTACCAAAACAGCCCGGGTGGTA
TTGAACCGATCTGATTCGAGAGGGAGTGGGTGATTGGTGGTTTTAATTTT
GGGAGGGCCGGCAGTTTTCTTCGCCGGGTTTGTTTTGCATCATGTCGGCA
CCTTGGTATCGCCGCTGGGTGAGTGGTGGTGTGAAGTAAAACTGGGCGTA
TGTAGTGATGAGGCTGCCTGCTGTTGCCCATTCTCAATCGATACACATCG
TGGTCTCAGCCCATGATTGCAGCCATGCCATGCAGAAACTATCATCCCGT
CCTCCTCTCCGACACATATGTCCTCCTTGCCCTCTCCGCGCTAGCTTGAC
GTGCTCCGTGCTGCCCTTGTACAAGGAGTTGTAGAAATATACAAGAGTTA
GGGGCTCGGGAATACCTACGGTTGTGCACCTGATGAGCTCGGCCCCCGCC
GTTCGTCGTCATGTTTTTATCTACAGTTACAGCGTGGAGGAGAACCTGGA
GCCGACGGTGGCGTGGCTGCAAAACCGCATGAAATTGGACCGGAAGGTGC
GTTGTTATTGTTGGGGGTGGCGACAATGGTGTACTGGTGGGTTTTGATTT
GAAGTCTAACTGTCTGCTTCCCCAAGTTTTTCATGTCGGGACGGTTATCT
GCGATGACGGTATCCACCTGTGCCTGCCTGCCTGCCTATATTCAGATATG
CTAGTACATGTCACCGATTGGTCGAGACGATGGACATTTCTGTGACAAGG
GTTCTTTCTTTGCGGTGCAAGCAAGCCCTACTTGGTTGCTTGAACTTTGT
TTGCTCTCTTCAGTCGCCGTGCACGTACTCCTTTCTACGGGCTCAAAATT
ACACGCCAATTGTTCCAAGGAGGCTTCGGTTCTTCTTGCGCTTGCTGTGC
CGGGGGCTCTAGGTCAAAACAGCGCTGACGCCGCCGCTGTGACTGGCTGC
AAGGAATCTACATATTACGGCGGAACATAGTATTCAGGAGTAATTTTGCT
TTTTTTTTCAGCGCCTTTTTTCTGCTTTTTTGTTCGTTTTTCCTCTGCCA
GAAAAACAAAATGCTCTGTAAAATCATTTTACGACTAATTTGAATTTCAA
CCACCCTACCAGACATGTTGTGAAAGAGGGCGACCACAGCATTCGAACGC
GCCCAAGCTTGTCTTCATCAGACAATCCCGACATACTGCAGGTTCCCGTG
AATGCAGGGTACTTTGTCACTGCTTTTTCGGACGGGCCGAGTTTAAACAG
TTCGGGGACGTCTTTTTTTTTTCTTGTTCTGGACGGCCCATGACACGGCG
CGCGGGACCATCGAAACAGTTTTGGAAACGACGCAGCCGTTCTCGAGAAA
CCGGCTGTTGAGAGTAAACTAAACAAAACGACAACCTTGAACCGTTCAAA
TTCGGCCCGTCCGAAAAAGTAGTGATAAAGTACCCTGCATTCACGGGAAC
CTGCTGTTATGTTGGGATTGTCTGATGAAGACAAGCTTCGGCGCGTTCGA
ACGCTGTGATTGCCCTCTTTCATTTAATGTCTGGTGGATTTATTACAAGT
TCCAAATTGGTCGTAAAATGATTTTTCAGAGCATTTTGTATTTCTGGCAG
AGGAAAAGAAAAAAAGGCTCTGAAAAAAAAAAGAAGCAAATTTGCTCCTG
GGTATCGTACTATGTGCCTCCGTAATGGCTTGGTTTCGAAGCAGTGCACG
ACATCTTGCAACCCCCCAACCTCTGCCACCTCCTTGCTTCCGCCGTCGTT
TTCGCCCTCTGCTAGCCTTTCCCGCTTTCTTGGTATGGTGTATGTGTTTA
TGTGTTGTGTGTGTTGTTTTCATCGGCACGTGTCTACCCGCTGCCTTCTT
TGTGTGTTTGTGTGTGTGTGGCAGGGCGTGGCTGCGGTAGTGCTAAGTTT
TCCAACAATTCTTGGTCTAAACCCAGAAACGAACATCGAGCCTAAGCTGG
CGTGGCTCAAGGAAAGCCTCGACTTGGACGAGGAGCTGGTTCTCCGTGTT
GTCACGGTATGTTCCTGGCTTTTATTTTTGATTCGAGCGGAGCGAGTATT
TGGAGCGAAGCGAGTTTCTAATTCACACCTGGGTTCCGCCGCAATATAGG
GGCCCCATAAAAAAACAAGTTTGTCTGTACGCTTTAACTTGGTTTTAGAG
TGCATCACTTGATTTTAGACTACCAAACGGAAAACAAAAAAAACGACGCC
GCTCCCACAGCGGGCGAAGGGATCACACAGCGGGCGACACAGCGGGTTTC
AGCGCTGGCTGCTGTCTCAGGCTGCTAAAATTGTTTTTTTGTGTCTCCGT
GCGGGCAAGAGTGCCAACTTTCAACTTTCACAGCCATCGTATGAAGGTAA
CCACACAGCTTCTCCTGTACAGCTCGCGGGTTCACCTATCTACATACATA
TCACAAAGGGCGGCCGCGTCAGGTTTTTGGGCCGCAAGAGAGCGTGTTCG
CGCAATGCGGTGAATCGGCGAGAACGCGAGTACTTTCGATTGGCGTGTGT
TTCGAACTCTTCGAGAGCGGTCACAGCTGTCTTCGCTATCGCACTGCTAT
GGGGCTTCGCAGGGCTTCTCACTGCCGTCTAAAGGCAGGTCTTCATCTAC
TTGGTACTATCAGTGTCGACTATAGTCTGTGGAGGTCTAGCGTTTCTCTG
CGTGGTGTTTTAGGAGAAACCGCGGGCAAGCACAAAAAAAAGGTCGGGTG
TACACACCTGGGTTCCACCGCAATATAGGGCCCCATCAAAAACACCGCTT
TCGACACAGACATGCTGCTTCCTCTTTTGTGGTGTGTTGTTGCACGCGCG
GGAGCTAACTGCTGCTTTAAGTAGCAGATCAAATGTTCAAAATGCAGCAC
GAGTAAACTAGGGAGGGCGTACCATGGGCCCGAGAGCACGACAAAGCTGC
GTCGAAAATCGCCACGTGCAAGGGACTTGCAGATGCACACGTACCAATGG
CCCGTGGACGCACACGTCTGACGACAGTTACATCTATCAGCTGTCGCTCG
TTTTAGCGACAGCTACTGTATCTTTAATGTATACAAATGTCAGCACTCTA
CGTCCAGTCTGCGAAACAGTTCCAGAGAGACTGTTCTTTTTCTGCGTTTT
AGGTGCGTGTTCGTTTGTGTGGCTGTACTGTGTGTTGTCGGTGCTGTCCA
GTGTCGTTTCAGCGTACATACTTCTTTCACGCGAAGCACAGCTGTCAGGG
CCTTGCACGGGTTTAGAGTATCCTGGGTCGTGTGTCTGTGGCGGGAACTA
TTGTCTGGTGTCCTTTTTATTTTGCTTGCTTTGGCGAGTAATAGATGCAA
ATTGTTGCGCCGCGTTGTCCGGAGTAGCAGCCGGGGGGTTTAGGCCGATA
TTTTGGGGGTCAAAGCAACCTTGAGAGCGCTGACAGGAACGAAACGTGTT
CGAGGCTCGAAATTGAGAGTCGCTCCAAATGGCATGACTACGAGAGTATT
TTGTGTTGAGGTAAATGCGGTTGGAAATGCTTAGAATCAGGTCTTGGCCC
ATTTGGTTTCACCCGTGTTTTTTGTCTGTTTTCTTTTTGTCGCACACAGG
CCCAACCCACTGTGCTCAAGTACTCCTCGAAGTCCAACTTAGGGCCGACG
TTGGACTTCTTTGGAAAGGAACTCGGGGGATCTCGTGAGGAAATCAGGGA
GGCAGTTGTTTCGAACTGCAGGCTGCTGAGGCGAGTTGTGTTGTTACCGC
TACTGCAGCCGCCGCTGCTGCTGTGCTGCACATTGTTTTTGTTCATTTTT
GGTTAATTCTGCTGCCGCTGCCGCTGCCGCTACTGCTGCTGTTTGCTGCT
GCGGCTGGTTCTGTCTTTTTATCTGATTCAATTCGATTCGCTGCTCTGTG
CGTGCCGAAAACAGCGCCAGCGTCACGAAAAGGATGATTCCGCGGGCAGC
AATGATCGAGAAGGCCGGGCTTGGCCCTCCCGTGTTTCGAGAACACGTGA
ATGCCATCGCTAGCTACACTGATCTGCACTTCCTAAAGTGGTTGCACTCG
CTGGTCCTCGAACAAGGAATACCGCCGCGACGAAAATTAACAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1410:20323..24666+

>mRNA_L-elsbetiae_contig1410.3061.1 ID=mRNA_L-elsbetiae_contig1410.3061.1|Name=mRNA_L-elsbetiae_contig1410.3061.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1392bp|location=Sequence derived from alignment at L-elsbetiae_contig1410:20323..24666+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTGGCTGGAGAGGCGACTGGACTTGGATCGTCAGGCCGTGTCCAAGAT
TATATGGAAGGAGCCGGCACTTTTTCGGCCCTCCATCGACCTCCTGGAAA
CGAAGCTGGTGTGGCTGAGGGAGGGTCTGGCGCTGGAGGAGCCGGACATT
GCCCGCCTAGTCCGTAGTAACCCCAACGTTTTAAGGCGTGGCTGGAGAGG
CGACTGGACTTGGATCGTCAGGCCGTGTCCAAGATTATATGGAAGGAGCC
GGCACTTTTTCGGCCCTCCATCGACCTCCTGGAAACGAAGCTGGTGTGGC
TGAGGGAGGGTCTGGCGCTGGAGGAGCCGGACATTGCCCGCCTAGTCCGT
AGTAACCCCAACGTTTTAAGTTACAGCGTGGAGGAGAACCTGGAGCCGAC
GGTGGCGTGGCTGCAAAACCGCATGAAATTGGACCGGAAGTTACAGCGTG
GAGGAGAACCTGGAGCCGACGGTGGCGTGGCTGCAAAACCGCATGAAATT
GGACCGGAAGGGCGTGGCTGCGGTAGTGCTAAGTTTTCCAACAATTCTTG
GTCTAAACCCAGAAACGAACATCGAGCCTAAGCTGGCGTGGCTCAAGGAA
AGCCTCGACTTGGACGAGGAGCTGGTTCTCCGTGTTGTCACGGGCGTGGC
TGCGGTAGTGCTAAGTTTTCCAACAATTCTTGGTCTAAACCCAGAAACGA
ACATCGAGCCTAAGCTGGCGTGGCTCAAGGAAAGCCTCGACTTGGACGAG
GAGCTGGTTCTCCGTGTTGTCACGGCCCAACCCACTGTGCTCAAGTACTC
CTCGAAGTCCAACTTAGGGCCGACGTTGGACTTCTTTGGAAAGGAACTCG
GGGGATCTCGTGAGGAAATCAGGGAGGCAGTTGTTTCGAACTGCAGGCTG
CTGAGGCCCAACCCACTGTGCTCAAGTACTCCTCGAAGTCCAACTTAGGG
CCGACGTTGGACTTCTTTGGAAAGGAACTCGGGGGATCTCGTGAGGAAAT
CAGGGAGGCAGTTGTTTCGAACTGCAGGCTGCTGAGCGCCAGCGTCACGA
AAAGGATGATTCCGCGGGCAGCAATGATCGAGAAGGCCGGGCTTGGCCCT
CCCGTGTTTCGAGAACACGTGAATGCCATCGCTAGCTACACTGATCTGCA
CTTCCTAAAGTGGTTGCACTCGCTGGTCCTCGAACAAGGAATACCGCCGC
GACGAAAATTAACACGCCAGCGTCACGAAAAGGATGATTCCGCGGGCAGC
AATGATCGAGAAGGCCGGGCTTGGCCCTCCCGTGTTTCGAGAACACGTGA
ATGCCATCGCTAGCTACACTGATCTGCACTTCCTAAAGTGGTTGCACTCG
CTGGTCCTCGAACAAGGAATACCGCCGCGACGAAAATTAACA
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