mRNA_L-elsbetiae_contig1410.3060.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1410.3060.1
Unique NamemRNA_L-elsbetiae_contig1410.3060.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1410.3060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1410contigL-elsbetiae_contig1410:18485..20019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size419
Cds size342
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1410.3060.1prot_L-elsbetiae_contig1410.3060.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1410 18485..19943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.5124733-CDS-L-elsbetiae_contig1410:18484..186591622815559.5124733-CDS-L-elsbetiae_contig1410:18484..18659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 18485..18659 +
1691682959.3970199-CDS-L-elsbetiae_contig1410:18484..186591691682959.3970199-CDS-L-elsbetiae_contig1410:18484..18659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 18485..18659 +
1622815559.5290058-CDS-L-elsbetiae_contig1410:19209..193501622815559.5290058-CDS-L-elsbetiae_contig1410:19209..19350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 19210..19350 +
1691682959.4100335-CDS-L-elsbetiae_contig1410:19209..193501691682959.4100335-CDS-L-elsbetiae_contig1410:19209..19350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 19210..19350 +
1622815559.542625-CDS-L-elsbetiae_contig1410:19917..199431622815559.542625-CDS-L-elsbetiae_contig1410:19917..19943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 19918..19943 +
1691682959.420271-CDS-L-elsbetiae_contig1410:19917..199431691682959.420271-CDS-L-elsbetiae_contig1410:19917..19943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 19918..19943 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.5560668-UTR-L-elsbetiae_contig1410:19943..200191622815559.5560668-UTR-L-elsbetiae_contig1410:19943..20019Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1410 19944..20019 +
1691682959.4314396-UTR-L-elsbetiae_contig1410:19943..200191691682959.4314396-UTR-L-elsbetiae_contig1410:19943..20019Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1410 19944..20019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1410.3060.1

>prot_L-elsbetiae_contig1410.3060.1 ID=prot_L-elsbetiae_contig1410.3060.1|Name=mRNA_L-elsbetiae_contig1410.3060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
ARRWHVNGPVGVAGGSGHDAGRGSHVGDGVPRVSDNAREVRTPGSSLAGG
EGRALVEADGESGQAQSRHPPLRRGGEAGAARRVAGAGRPDQSGQYNQGY
LEVSPYAPSRPRV*
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mRNA from alignment at L-elsbetiae_contig1410:18485..20019+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1410.3060.1 ID=mRNA_L-elsbetiae_contig1410.3060.1|Name=mRNA_L-elsbetiae_contig1410.3060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1535bp|location=Sequence derived from alignment at L-elsbetiae_contig1410:18485..20019+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCGGCGGTGGCATGTCAACGGCCCCGTGGGTGTTGCTGGAGGAAGCGG
GCATGACGCGGGCAGAGGTAGCCACGTTGGTGACGGCGTACCCCGGGTTT
CTGACAATGCCCGCGAGGTGCGCACGCCCGGTAGTTCATTGGCTGGCGGA
GAGGGCAGGGCTCTCGTCGAAGCAGGTGAGGTGAATCAAGGGCCTGGTAT
CTGCATGTATGCCTCCTTCACGTACGGTACGCAGGAGCAGTGTCCGCTTA
GGGCGGATTTGGTTAATCCCGCAACACCGCCCTTGTCTCACGTACGTACG
CTTCGAGTTGAGGGCAGATTCCACGCTACCGCCGTGTATCTATTGTCACC
AGGTAAGCATACTTTTGTTGCGGTTTATCGCTTCCGCCGAGCTCGCCTGC
TCTTGCCATCTGCGAAAGTGGGTGTTGAAAGTTGGTGATGAGATAGTTGC
CCCAGGGGTCCGATGCTTCGTGCTTCGTGCTGCGGTTCTCCGAGCGGGTT
TCTGTCCCAAATATCTTTGGGTGTCTGTTGGTATCCAGGCTCCGAGTGTT
CGCTCGTCTCTCTCTGCCTGCCTGCCTACCTCTTGCCTCTGTGCGTGAGA
GAAGAGACACGACGTGCGTTCTAATATTTTGAGGGGAGGTGGTACCGGCA
TTTACTAAATACATGTATCCGCTCGTCTAAGTGGCTGCCTGACTGCCGGT
CTGCCCCTTCATGGAACCTTTGCAGATGGTGAAAGTGGTCAAGCGCAATC
CCGCCATCCTCCGCTACGACGTGGAGGCGAAGCTGGAGCCGCACGTCGAG
TGGCTGGAGCGGGAAGGCCTGACCAATCGGGCCAGTATAACCAGGGTTAT
CTCGAGGTCTCCCCATGTGAGGAATGGCAATTCAATCTCGTGTTTCAGCA
TCAAAACACGTGCGATGTATTTTAATATTGTTTCGGGGACAGGGTAAGAC
ATGCTCAATTCGTACACCACTAGTTGCCTCGTCTTGGGCTTACTGCTGTG
CCGGGTTGATGTTTGTTTGTGTAATAAATCGAACAGACTTCAAGCCTGGA
ACACTGCCAACGCCCAGAAACCAGTGCTTGGGCAAGCGGTGTATGGTACT
AGATATATGCCGTGCGAAGTTTCTGCTTCCTGCTGTTTTACACGTTACCC
TCCTGCAAAGTCCAAGTATCGAAACCACCCATTGTACTCAAAAAAGGCTT
CGGGTCTTTTCGTTTTCCTGGCGATGTTCCAGCCGGAAACAAACACTGAT
TCGCTTCGTTCCTGGCTTTTCGCCTGGTTTTTGAGGAACCAGCTTTCGAC
GGAGTCCTGCAATCGAGCTCAATCATCCCCATGGTGAAACTCTGGAGGCA
TAAAAACACACAAAGCTCAGAAGGCCGCGAAAACCGGAGAATCAACATTC
CTGTTTACTTGTTTGTGCGTGTTTTTATTGCAGATGCTCCGTCTCGACCT
CGAGTCTAACGCCAATTCCAAGACTGCATGGCTTCGGAGCTACCTGGGCT
TCTCGACCGACATGGTGGTTCGCGTGCTCACGATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1410:18485..20019+

>mRNA_L-elsbetiae_contig1410.3060.1 ID=mRNA_L-elsbetiae_contig1410.3060.1|Name=mRNA_L-elsbetiae_contig1410.3060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig1410:18485..20019+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCGGCGGTGGCATGTCAACGGCCCCGTGGGTGTTGCTGGAGGAAGCGG
GCATGACGCGGGCAGAGGTAGCCACGTTGGTGACGGCGTACCCCGGGTTT
CTGACAATGCCCGCGAGGTGCGCACGCCCGGTAGTTCATTGGCTGGCGGA
GAGGGCAGGGCTCTCGTCGAAGCAGGCTCGGCGGTGGCATGTCAACGGCC
CCGTGGGTGTTGCTGGAGGAAGCGGGCATGACGCGGGCAGAGGTAGCCAC
GTTGGTGACGGCGTACCCCGGGTTTCTGACAATGCCCGCGAGGTGCGCAC
GCCCGGTAGTTCATTGGCTGGCGGAGAGGGCAGGGCTCTCGTCGAAGCAG
ATGGTGAAAGTGGTCAAGCGCAATCCCGCCATCCTCCGCTACGACGTGGA
GGCGAAGCTGGAGCCGCACGTCGAGTGGCTGGAGCGGGAAGGCCTGACCA
ATCGGGCCAGTATAACCAGGGTTATCTCGAGGTCTCCCCATATGGTGAAA
GTGGTCAAGCGCAATCCCGCCATCCTCCGCTACGACGTGGAGGCGAAGCT
GGAGCCGCACGTCGAGTGGCTGGAGCGGGAAGGCCTGACCAATCGGGCCA
GTATAACCAGGGTTATCTCGAGGTCTCCCCATATGCTCCGTCTCGACCTC
GAGTCTAAATGCTCCGTCTCGACCTCGAGTCTAA
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