mRNA_L-elsbetiae_contig1410.3059.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1410.3059.1
Unique NamemRNA_L-elsbetiae_contig1410.3059.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1410.3059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1410contigL-elsbetiae_contig1410:13499..13920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-28_001700.1
Exons1
Model size422
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.6957858-UTR-L-elsbetiae_contig1410:13498..135061622815559.6957858-UTR-L-elsbetiae_contig1410:13498..13506Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1410 13499..13506 +
1691682959.5104086-UTR-L-elsbetiae_contig1410:13498..135061691682959.5104086-UTR-L-elsbetiae_contig1410:13498..13506Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1410 13499..13506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.7133148-CDS-L-elsbetiae_contig1410:13506..139201622815559.7133148-CDS-L-elsbetiae_contig1410:13506..13920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 13507..13920 +
1691682959.5257404-CDS-L-elsbetiae_contig1410:13506..139201691682959.5257404-CDS-L-elsbetiae_contig1410:13506..13920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1410 13507..13920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1410.3059.1prot_L-elsbetiae_contig1410.3059.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1410 13507..13920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1410.3059.1

>prot_L-elsbetiae_contig1410.3059.1 ID=prot_L-elsbetiae_contig1410.3059.1|Name=mRNA_L-elsbetiae_contig1410.3059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MRLFITGAWQPLAASTASLHVDASVPLPSYHWPRQQRYFKQPASTSTGVR
RLSYSTLALEPSQASPILAAVTAGRRRYRGVVTSSNISFKSSPTRGRGLG
ASPASAASEHGRTDKDNGDLAALLDMLGLTERDILPNM
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mRNA from alignment at L-elsbetiae_contig1410:13499..13920+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1410.3059.1 ID=mRNA_L-elsbetiae_contig1410.3059.1|Name=mRNA_L-elsbetiae_contig1410.3059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=422bp|location=Sequence derived from alignment at L-elsbetiae_contig1410:13499..13920+ (Laminarionema elsbetiae ELsaHSoW15)
GTACGATCATGAGGTTATTTATAACAGGGGCGTGGCAGCCGCTTGCCGCT
TCTACCGCCAGCCTGCATGTCGATGCGTCGGTTCCATTGCCGAGCTATCA
CTGGCCACGGCAACAGCGCTACTTCAAGCAGCCAGCTTCCACCAGCACAG
GGGTGCGACGGCTGTCCTACTCAACCCTCGCGCTCGAGCCTTCGCAGGCG
TCTCCCATTCTTGCAGCAGTAACAGCAGGCCGACGAAGATATAGAGGCGT
GGTCACCAGCAGCAATATCAGCTTCAAAAGTTCACCAACCCGTGGCCGCG
GGCTTGGAGCGTCGCCTGCATCAGCAGCAAGCGAGCACGGGCGAACCGAC
AAGGACAATGGCGATCTGGCGGCGCTGTTGGACATGCTGGGACTCACAGA
GAGGGATATCCTGCCGAATATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1410:13499..13920+

>mRNA_L-elsbetiae_contig1410.3059.1 ID=mRNA_L-elsbetiae_contig1410.3059.1|Name=mRNA_L-elsbetiae_contig1410.3059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig1410:13499..13920+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGTTATTTATAACAGGGGCGTGGCAGCCGCTTGCCGCTTCTACCGC
CAGCCTGCATGTCGATGCGTCGGTTCCATTGCCGAGCTATCACTGGCCAC
GGCAACAGCGCTACTTCAAGCAGCCAGCTTCCACCAGCACAGGGGTGCGA
CGGCTGTCCTACTCAACCCTCGCGCTCGAGCCTTCGCAGGCGTCTCCCAT
TCTTGCAGCAGTAACAGCAGGCCGACGAAGATATAGAGGCGTGGTCACCA
GCAGCAATATCAGCTTCAAAAGTTCACCAACCCGTGGCCGCGGGCTTGGA
GCGTCGCCTGCATCAGCAGCAAGCGAGCACGGGCGAACCGACAAGGACAA
TGGCGATCTGGCGGCGCTGTTGGACATGCTGGGACTCACAGAGAGGGATA
TCCTGCCGAATATGATGAGGTTATTTATAACAGGGGCGTGGCAGCCGCTT
GCCGCTTCTACCGCCAGCCTGCATGTCGATGCGTCGGTTCCATTGCCGAG
CTATCACTGGCCACGGCAACAGCGCTACTTCAAGCAGCCAGCTTCCACCA
GCACAGGGGTGCGACGGCTGTCCTACTCAACCCTCGCGCTCGAGCCTTCG
CAGGCGTCTCCCATTCTTGCAGCAGTAACAGCAGGCCGACGAAGATATAG
AGGCGTGGTCACCAGCAGCAATATCAGCTTCAAAAGTTCACCAACCCGTG
GCCGCGGGCTTGGAGCGTCGCCTGCATCAGCAGCAAGCGAGCACGGGCGA
ACCGACAAGGACAATGGCGATCTGGCGGCGCTGTTGGACATGCTGGGACT
CACAGAGAGGGATATCCTGCCGAATATG
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