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Homology
BLAST of mRNA_L-elsbetiae_contig141.3057.1 vs. uniprot
Match: D7G440_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G440_ECTSI) HSP 1 Score: 213 bits (542), Expect = 2.500e-58 Identity = 191/441 (43.31%), Postives = 230/441 (52.15%), Query Frame = 1
Query: 394 LSGTGTGSRHGPGGSRHGSEAAPPPIPENGEVIGWTAALDTKGDGAGXXXXXXXXNSPAGLLGEFGKQFSLALNGTFGDDGXXXXXXXXXXXXXXXXXXXXGVSKRPSDTATSSDRGDADSSRHSEAGSLGSVGRMAEGFLKHLDRAVSSMSVAGDGSAHGSGWGGSVSAAGGSAHGS----VASIGTAGXXXXXXXXRRASGVLLPWAQRDVNEGQDDRAAGGEEKPPSKLDVKGSDDMVEGFRRGVERVGRAFSTGVQSTSSTPRGGSGG------------AAGFGSGTPGXXXAAALVTPRGPSSLK-EFSTPVDDRPVRASTSAAAFGTXXXXXXXXXXXXXXXXSCNTVDVSGHSATTAAGAGVGGGGASHKRRPSTMSDAAV-VETAAGYEAAMANWPAGKVEGNPAWEEWTPEKKLAAHLITAGCLAVIVCTW 1662
LS + TGS+HG G SRHGSE+APPPIPENGE++G ALD G G+G +SPAGLLGE GKQFSLALN +F +G VSK P D T++++G D+S HSE VGRMAEG LK +DRAV S+SV GDGS VAS+G G RR SG++LPW+Q+D+++G+D ++ + LD S D R GRAF TG + TP GG AA FG XXX A TPR S K F TPV +R V STSA+ +GT D +G SA + AG G G G A R+ S + V V+ AGYEA MANWPAGKVEGNPAWEEW+ KKL HL+TAGCLAVIV TW
Sbjct: 159 LSSSSTGSQHGSGSSRHGSESAPPPIPENGELVG---ALDGSG-GSGS-------SSPAGLLGEIGKQFSLALNRSFNLEGSDTGEASKPPPP---------VSK-PRDPRTTAEKGLEDTSSHSEKTG---VGRMAEGLLKQVDRAVPSISV-GDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALGSGVGGGS-RRPSGLVLPWSQQDMDQGRDGGXXXXXDEATN-LDADASGD---------NRFGRAF-TGAGAGGGTPHLNDGGHDESMGPAERAFAAAFGXXXXXXXXXAVCSTPRVTSHPKLSFGTPVTERVVSTSTSASIYGTPSRVTPSASVFGTTLRGF-AADTAGPSAGSTAG-GSGHGSAGPVRKSSFAIEGVVAVDKVAGYEAGMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW 560
BLAST of mRNA_L-elsbetiae_contig141.3057.1 vs. uniprot
Match: D7FSU7_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU7_ECTSI) HSP 1 Score: 141 bits (356), Expect = 9.060e-32 Identity = 157/419 (37.47%), Postives = 189/419 (45.11%), Query Frame = 1
Query: 448 SEAAPPPIPENGEVIGWTAALDTKGDGAGXXXXXXXXNSPAGLLGEFGKQFSLALNGTFGDDGXXXXXXXXXXXXXXXXXXXXGVSKRPSDTATSSDRGDADSSRHSEAGSLGSVGRMAEGFLKHLDRAVSSMSVAGDGSAHGSGWGGSVSAAGGSAHGSVASIGTAGXXXXXXXXRRASGVLLPWAQRDVNEGQDDRAAGGEEKPPSKLDVKGSDDMVEGFRRGVERVGRAFSTGVQSTSSTPRGGSGG------------AAGFGSGTPGXXXAAALVTPRGPSSLK-EFSTPVDDRPVRASTSAAAFGTXXXXXXXXXXXXXXXXSCNTVDVSGHSATTAAGAGVGGGGASHKRRPSTMSDAAV-VETAAGYEAAMANWPAGKVEGNPAWEEWTPEKKLAAHLITAGCLAVIVCTW 1662
SE+APPPIPENGE++G LD+ G G+G +SPAGLLGE GKQFSLALNG+FG +G XXXXX V+K P D ++++G D+S HSE D+++G+D E++ + LD S D R GRAF TG + TP GG AA FG G A TPR S K F TPV +R V STSA+ +GT XXXXXXX D +G SA + AG G G G A R+ S + V V+ AGYEAAMANWPAGKVEGNPAWEEW+ KKL HL+TAGCLAVIV TW
Sbjct: 700 SESAPPPIPENGELVG---TLDSSG-GSGS-------SSPAGLLGEIGKQFSLALNGSFGHEGSDTGEASMPPXXXXX------VAK-PRDAGATAEKGLQDTSSHSEK------------------------------------------------------------------------------TGDMDQGRDGGXXXXEDEATN-LDADASGD---------NRFGRAF-TGAGAGGGTPHLNDGGRDESMGPAERAFAAAFGGG------GAVCSTPRVTSHPKLSFGTPVTERVVSTSTSASVYGTPSRVTPSXXXXXXXLRGF-AADTAGPSAGSTAG-GSGHGSAGPVRKSSFAIEGVVAVDKVAGYEAAMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW 1003
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 149.1 |
Seed ortholog evalue | 6.3e-33 |
Seed eggNOG ortholog | 2880.D7FSU7 |
KEGG ko | ko:K12492 |
KEGG Pathway | ko04144,map04144 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | lipid binding |
EggNOG OGs | KOG1729@1,KOG1729@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko04131 |
Exons | 3 |
Model size | 1666 |
Cds size | 1665 |
Stop | 1 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815559.4484763-CDS-L-elsbetiae_contig141:49048..49978 | 1622815559.4484763-CDS-L-elsbetiae_contig141:49048..49978 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig141 49049..49978 - |
1691682959.3645875-CDS-L-elsbetiae_contig141:49048..49978 | 1691682959.3645875-CDS-L-elsbetiae_contig141:49048..49978 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig141 49049..49978 - |
1622815559.4623535-CDS-L-elsbetiae_contig141:50032..50628 | 1622815559.4623535-CDS-L-elsbetiae_contig141:50032..50628 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig141 50033..50628 - |
1691682959.378261-CDS-L-elsbetiae_contig141:50032..50628 | 1691682959.378261-CDS-L-elsbetiae_contig141:50032..50628 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig141 50033..50628 - |
1622815559.4732866-CDS-L-elsbetiae_contig141:50956..51095 | 1622815559.4732866-CDS-L-elsbetiae_contig141:50956..51095 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig141 50957..51095 - |
1691682959.3875065-CDS-L-elsbetiae_contig141:50956..51095 | 1691682959.3875065-CDS-L-elsbetiae_contig141:50956..51095 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig141 50957..51095 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig141.3057.1 >prot_L-elsbetiae_contig141.3057.1 ID=prot_L-elsbetiae_contig141.3057.1|Name=mRNA_L-elsbetiae_contig141.3057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=555bp
AEAAAEAAAGLGATAGMMSPRSGGKKKAETVGVVSGEQLLLYSCRQNLRS KLVRAMSRNLNPSPASSARSPGSSANNSRHNGGGGSGHGSGSGHGSGSGF GFGSGHNLSWHSSGGGGTGGGGSGHGATGRRLSGTGTGSRHGPGGSRHGS EAAPPPIPENGEVIGWTAALDTKGDGAGGGGGGGGGNSPAGLLGEFGKQF SLALNGTFGDDGGGSAAGGAAAAAHGSMPPPPGVSKRPSDTATSSDRGDA DSSRHSEAGSLGSVGRMAEGFLKHLDRAVSSMSVAGDGSAHGSGWGGSVS AAGGSAHGSVASIGTAGGGGGGGGSRRASGVLLPWAQRDVNEGQDDRAAG GEEKPPSKLDVKGSDDMVEGFRRGVERVGRAFSTGVQSTSSTPRGGSGGA AGFGSGTPGGGGAAALVTPRGPSSLKEFSTPVDDRPVRASTSAAAFGTPL RVFTSAEIYGTPLHSCNTVDVSGHSATTAAGAGVGGGGASHKRRPSTMSD AAVVETAAGYEAAMANWPAGKVEGNPAWEEWTPEKKLAAHLITAGCLAVI VCTW* back to topmRNA from alignment at L-elsbetiae_contig141:49049..51095- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig141.3057.1 ID=mRNA_L-elsbetiae_contig141.3057.1|Name=mRNA_L-elsbetiae_contig141.3057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2047bp|location=Sequence derived from alignment at L-elsbetiae_contig141:49049..51095- (Laminarionema elsbetiae ELsaHSoW15) GCAGAGGCGGCGGCAGAGGCGGCGGCGGGTCTCGGCGCCACGGCCGGGAT
GATGAGCCCTCGCTCCGGCGGCAAGAAGAAGGCGGAGACGGTAGGTGTTG
TCTCGGGAGAACAACTACTACTTTATTCCTGCCGTCAGAGTTTTTTTTTT
CTTGGGAAGATCAAAGAGCCGACGGCTCTGGTCTGCGCAAAGCAATTTGC
GCAGACCAGAGCGAGTCTCTGACACAAGAGATAAATACATGGATGTGCAG
GTAGCCGCCCGCTCTGGTCTGCGCAAAGCAATTTGTGCAGACCAGAGCGA
AGTCTCTGACACAAGAGATAAATACATGGATGCGCAGGTACTTTGGTCTG
AAAACACACGCACCGCCCTGCTTCCCGCGTATCCGTCGTTGCAGCAGGCG
GCAGGTGCAAGTGCAGAGACGGCAGCGCAGCAGGGAGAAAAGGCCGCCGA
TAACGAGGAGGCATCAGATCTCCGGAGCAAGCTGGTGCGGGCGATGTCGA
GGAACCTCAACCCCAGCCCGGCGTCGTCGGCGCGCTCGCCCGGCTCTTCG
GCCAACAACAGCCGCCACAACGGCGGCGGCGGCAGCGGCCACGGCTCCGG
CAGCGGCCACGGCTCCGGTAGCGGCTTCGGCTTTGGCAGCGGGCACAACC
TCAGCTGGCACAGCAGCGGCGGCGGGGGCACCGGTGGCGGTGGCAGCGGC
CACGGCGCCACAGGTCGCCGTCTTTCCGGCACGGGCACCGGCAGCCGCCA
CGGCCCGGGCGGCAGCCGCCACGGGTCGGAGGCTGCGCCGCCTCCGATAC
CCGAGAACGGGGAGGTGATCGGGTGGACGGCCGCCCTGGATACCAAGGGG
GATGGCGCGGGCGGCGGCGGCGGCGGCGGCGGCGGCAATAGCCCCGCCGG
GTTGCTCGGCGAGTTCGGAAAGCAGTTTAGCCTCGCCCTCAACGGGACGT
TCGGCGACGACGGCGGTGGATCGGCGGCCGGCGGTGCTGCCGCTGCCGCG
CACGGGTCGATGCCGCCCCCGCCGGGGGTGTCGAAACGGCCGTCAGACAC
GGCGACTTCCAGCGTGTTGACCTCGGGCGAGGCCGGTGCGGCGGGAGGGG
AAGGGGCGGGAGAGAAGGATCGAGGGGACGCCGACTCTTCGCGCCATTCC
GAGGCGGGCAGCTTGGGCAGCGTCGGGCGGATGGCCGAGGGCTTCCTGAA
GCACCTCGACCGAGCGGTTTCCAGCATGTCCGTCGCCGGGGACGGCAGCG
CGCACGGGTCTGGGTGGGGCGGGAGTGTCAGCGCGGCGGGGGGCAGCGCG
CACGGGAGCGTCGCGAGCATCGGGACGGCGGGCGGCGGCGGCGGCGGCGG
CGGGTCGCGGAGAGCAAGCGGCGTCCTGCTCCCCTGGGCCCAGCGGGACG
TGAACGAGGGGCAAGACGACCGCGCCGCGGGCGGAGAGGAGAAGCCGCCC
AGCAAGCTTGACGTGAAGGGGAGCGATGACATGGTTGAGGGCTTCAGGCG
CGGCGTCGAGCGCGTCGGGCGGGCGTTCTCTACGGGCGTCCAGAGCACCA
GCAGCACCCCCCGCGGCGGAAGCGGCGGCGCCGCGGGTTTCGGTTCGGGC
ACGCCTGGTGGAGGAGGGGCGGCGGCGCTAGTCACGCCCCGCGGGCCCTC
GAGCCTGAAGGAGTTCAGCACGCCTGTGGACGACCGCCCCGTCCGCGCCT
CGACCAGCGCAGCCGCGTTCGGCACGCCTCTGCGGGTTTTCACGAGCGCG
GAGATCTACGGCACGCCTCTCCACAGCTGCAACACTGTCGATGTGAGCGG
TCATAGCGCAACGACGGCGGCAGGCGCAGGTGTCGGCGGCGGCGGGGCCT
CCCACAAGAGACGCCCCAGCACCATGAGCGACGCGGCGGTGGTGGAGACG
GCGGCGGGGTACGAGGCGGCGATGGCCAACTGGCCGGCCGGGAAGGTGGA
GGGGAACCCGGCCTGGGAGGAATGGACCCCGGAGAAGAAGCTGGCGGCCC
ACTTGATCACGGCGGGATGCCTGGCGGTGATCGTTTGCACATGGTGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig141:49049..51095- >mRNA_L-elsbetiae_contig141.3057.1 ID=mRNA_L-elsbetiae_contig141.3057.1|Name=mRNA_L-elsbetiae_contig141.3057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3330bp|location=Sequence derived from alignment at L-elsbetiae_contig141:49049..51095- (Laminarionema elsbetiae ELsaHSoW15) GCAGAGGCGGCGGCAGAGGCGGCGGCGGGTCTCGGCGCCACGGCCGGGAT GATGAGCCCTCGCTCCGGCGGCAAGAAGAAGGCGGAGACGGTAGGTGTTG TCTCGGGAGAACAACTACTACTTTATTCCTGCCGTCAGAGCAGAGGCGGC GGCAGAGGCGGCGGCGGGTCTCGGCGCCACGGCCGGGATGATGAGCCCTC GCTCCGGCGGCAAGAAGAAGGCGGAGACGGTAGGTGTTGTCTCGGGAGAA CAACTACTACTTTATTCCTGCCGTCAGAATCTCCGGAGCAAGCTGGTGCG GGCGATGTCGAGGAACCTCAACCCCAGCCCGGCGTCGTCGGCGCGCTCGC CCGGCTCTTCGGCCAACAACAGCCGCCACAACGGCGGCGGCGGCAGCGGC CACGGCTCCGGCAGCGGCCACGGCTCCGGTAGCGGCTTCGGCTTTGGCAG CGGGCACAACCTCAGCTGGCACAGCAGCGGCGGCGGGGGCACCGGTGGCG GTGGCAGCGGCCACGGCGCCACAGGTCGCCGTCTTTCCGGCACGGGCACC GGCAGCCGCCACGGCCCGGGCGGCAGCCGCCACGGGTCGGAGGCTGCGCC GCCTCCGATACCCGAGAACGGGGAGGTGATCGGGTGGACGGCCGCCCTGG ATACCAAGGGGGATGGCGCGGGCGGCGGCGGCGGCGGCGGCGGCGGCAAT AGCCCCGCCGGGTTGCTCGGCGAGTTCGGAAAGCAGTTTAGCCTCGCCCT CAACGGGACGTTCGGCGACGACGGCGGTGGATCGGCGGCCGGCGGTGCTG CCGCTGCCGCGCACGGGTCGATGCCGCCCCCGCCGGGGGTGTCGAAACGG CCGTCAGACACGGCGACTTCCAGCATCTCCGGAGCAAGCTGGTGCGGGCG ATGTCGAGGAACCTCAACCCCAGCCCGGCGTCGTCGGCGCGCTCGCCCGG CTCTTCGGCCAACAACAGCCGCCACAACGGCGGCGGCGGCAGCGGCCACG GCTCCGGCAGCGGCCACGGCTCCGGTAGCGGCTTCGGCTTTGGCAGCGGG CACAACCTCAGCTGGCACAGCAGCGGCGGCGGGGGCACCGGTGGCGGTGG CAGCGGCCACGGCGCCACAGGTCGCCGTCTTTCCGGCACGGGCACCGGCA GCCGCCACGGCCCGGGCGGCAGCCGCCACGGGTCGGAGGCTGCGCCGCCT CCGATACCCGAGAACGGGGAGGTGATCGGGTGGACGGCCGCCCTGGATAC CAAGGGGGATGGCGCGGGCGGCGGCGGCGGCGGCGGCGGCGGCAATAGCC CCGCCGGGTTGCTCGGCGAGTTCGGAAAGCAGTTTAGCCTCGCCCTCAAC GGGACGTTCGGCGACGACGGCGGTGGATCGGCGGCCGGCGGTGCTGCCGC TGCCGCGCACGGGTCGATGCCGCCCCCGCCGGGGGTGTCGAAACGGCCGT CAGACACGGCGACTTCCAGCGATCGAGGGGACGCCGACTCTTCGCGCCAT TCCGAGGCGGGCAGCTTGGGCAGCGTCGGGCGGATGGCCGAGGGCTTCCT GAAGCACCTCGACCGAGCGGTTTCCAGCATGTCCGTCGCCGGGGACGGCA GCGCGCACGGGTCTGGGTGGGGCGGGAGTGTCAGCGCGGCGGGGGGCAGC GCGCACGGGAGCGTCGCGAGCATCGGGACGGCGGGCGGCGGCGGCGGCGG CGGCGGGTCGCGGAGAGCAAGCGGCGTCCTGCTCCCCTGGGCCCAGCGGG ACGTGAACGAGGGGCAAGACGACCGCGCCGCGGGCGGAGAGGAGAAGCCG CCCAGCAAGCTTGACGTGAAGGGGAGCGATGACATGGTTGAGGGCTTCAG GCGCGGCGTCGAGCGCGTCGGGCGGGCGTTCTCTACGGGCGTCCAGAGCA CCAGCAGCACCCCCCGCGGCGGAAGCGGCGGCGCCGCGGGTTTCGGTTCG GGCACGCCTGGTGGAGGAGGGGCGGCGGCGCTAGTCACGCCCCGCGGGCC CTCGAGCCTGAAGGAGTTCAGCACGCCTGTGGACGACCGCCCCGTCCGCG CCTCGACCAGCGCAGCCGCGTTCGGCACGCCTCTGCGGGTTTTCACGAGC GCGGAGATCTACGGCACGCCTCTCCACAGCTGCAACACTGTCGATGTGAG CGGTCATAGCGCAACGACGGCGGCAGGCGCAGGTGTCGGCGGCGGCGGGG CCTCCCACAAGAGACGCCCCAGCACCATGAGCGACGCGGCGGTGGTGGAG ACGGCGGCGGGGTACGAGGCGGCGATGGCCAACTGGCCGGCCGGGAAGGT GGAGGGGAACCCGGCCTGGGAGGAATGGACCCCGGAGAAGAAGCTGGCGG CCCACTTGATCACGGCGGGATGCCTGGCGGTGATCGTTTGCACATGGTGA GATCGAGGGGACGCCGACTCTTCGCGCCATTCCGAGGCGGGCAGCTTGGG CAGCGTCGGGCGGATGGCCGAGGGCTTCCTGAAGCACCTCGACCGAGCGG TTTCCAGCATGTCCGTCGCCGGGGACGGCAGCGCGCACGGGTCTGGGTGG GGCGGGAGTGTCAGCGCGGCGGGGGGCAGCGCGCACGGGAGCGTCGCGAG CATCGGGACGGCGGGCGGCGGCGGCGGCGGCGGCGGGTCGCGGAGAGCAA GCGGCGTCCTGCTCCCCTGGGCCCAGCGGGACGTGAACGAGGGGCAAGAC GACCGCGCCGCGGGCGGAGAGGAGAAGCCGCCCAGCAAGCTTGACGTGAA GGGGAGCGATGACATGGTTGAGGGCTTCAGGCGCGGCGTCGAGCGCGTCG GGCGGGCGTTCTCTACGGGCGTCCAGAGCACCAGCAGCACCCCCCGCGGC GGAAGCGGCGGCGCCGCGGGTTTCGGTTCGGGCACGCCTGGTGGAGGAGG GGCGGCGGCGCTAGTCACGCCCCGCGGGCCCTCGAGCCTGAAGGAGTTCA GCACGCCTGTGGACGACCGCCCCGTCCGCGCCTCGACCAGCGCAGCCGCG TTCGGCACGCCTCTGCGGGTTTTCACGAGCGCGGAGATCTACGGCACGCC TCTCCACAGCTGCAACACTGTCGATGTGAGCGGTCATAGCGCAACGACGG CGGCAGGCGCAGGTGTCGGCGGCGGCGGGGCCTCCCACAAGAGACGCCCC AGCACCATGAGCGACGCGGCGGTGGTGGAGACGGCGGCGGGGTACGAGGC GGCGATGGCCAACTGGCCGGCCGGGAAGGTGGAGGGGAACCCGGCCTGGG AGGAATGGACCCCGGAGAAGAAGCTGGCGGCCCACTTGATCACGGCGGGA TGCCTGGCGGTGATCGTTTGCACATGGTGA back to top
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