mRNA_L-elsbetiae_contig141.3056.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig141.3056.1
Unique NamemRNA_L-elsbetiae_contig141.3056.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig141.3056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig141contigL-elsbetiae_contig141:44696..45179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size485
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.863088-CDS-L-elsbetiae_contig141:44695..450071622815558.863088-CDS-L-elsbetiae_contig141:44695..45007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig141 44696..45007 +
1691682958.9722793-CDS-L-elsbetiae_contig141:44695..450071691682958.9722793-CDS-L-elsbetiae_contig141:44695..45007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig141 44696..45007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.8732297-UTR-L-elsbetiae_contig141:45007..451791622815558.8732297-UTR-L-elsbetiae_contig141:45007..45179Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig141 45008..45179 +
1691682958.983034-UTR-L-elsbetiae_contig141:45007..451791691682958.983034-UTR-L-elsbetiae_contig141:45007..45179Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig141 45008..45179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig141.3056.1prot_L-elsbetiae_contig141.3056.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig141 44696..45007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig141.3056.1

>prot_L-elsbetiae_contig141.3056.1 ID=prot_L-elsbetiae_contig141.3056.1|Name=mRNA_L-elsbetiae_contig141.3056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
PPSSPERSWRCRRYACHVAQPGVLLRSPPLLLSVCGSVLLVTYLPQRVLC
FGVWCCVLCGAGEISGLPGEDKFSKSGCNQRGFGNPDENPIVSSSVFQYL
VPL*
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mRNA from alignment at L-elsbetiae_contig141:44696..45179+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig141.3056.1 ID=mRNA_L-elsbetiae_contig141.3056.1|Name=mRNA_L-elsbetiae_contig141.3056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=484bp|location=Sequence derived from alignment at L-elsbetiae_contig141:44696..45179+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCCTCCTCGCCGGAGCGTTCTTGGAGATGTCGGCGATATGCATGCCA
CGTCGCCCAGCCAGGTGTCTTACTTCGCAGTCCCCCGCTACTACTAAGTG
TGTGTGGATCAGTACTCCTCGTAACCTACCTGCCGCAGCGCGTGTTGTGT
TTTGGGGTTTGGTGTTGTGTCCTTTGTGGTGCGGGGGAGATCTCAGGTCT
TCCCGGAGAAGATAAATTCTCCAAGTCGGGTTGCAATCAACGAGGCTTTG
GGAATCCGGACGAGAACCCAATCGTCAGTAGTAGTGTTTTTCAGTATCTG
GTACCGTTATAGGAGTACCTGTTTGGATTTGGTTCGGTTCGGTTCAGTTG
GTTGGTCGGGGGAGGAGGAGGAGGAGGAGGAGAGATTACGGCGCATAGAC
AGGCAAGGCAGGCAGCCCCGACAGGTCGATGCCCTCGAAATCGGTCGTGG
TTCCAGAGCTCGCCCACCGGGTGGAGTGACCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig141:44696..45179+

>mRNA_L-elsbetiae_contig141.3056.1 ID=mRNA_L-elsbetiae_contig141.3056.1|Name=mRNA_L-elsbetiae_contig141.3056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig141:44696..45179+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCCTCCTCGCCGGAGCGTTCTTGGAGATGTCGGCGATATGCATGCCA
CGTCGCCCAGCCAGGTGTCTTACTTCGCAGTCCCCCGCTACTACTAAGTG
TGTGTGGATCAGTACTCCTCGTAACCTACCTGCCGCAGCGCGTGTTGTGT
TTTGGGGTTTGGTGTTGTGTCCTTTGTGGTGCGGGGGAGATCTCAGGTCT
TCCCGGAGAAGATAAATTCTCCAAGTCGGGTTGCAATCAACGAGGCTTTG
GGAATCCGGACGAGAACCCAATCGTCAGTAGTAGTGTTTTTCAGTATCTG
GTACCGTTATAGCCCCCCTCCTCGCCGGAGCGTTCTTGGAGATGTCGGCG
ATATGCATGCCACGTCGCCCAGCCAGGTGTCTTACTTCGCAGTCCCCCGC
TACTACTAAGTGTGTGTGGATCAGTACTCCTCGTAACCTACCTGCCGCAG
CGCGTGTTGTGTTTTGGGGTTTGGTGTTGTGTCCTTTGTGGTGCGGGGGA
GATCTCAGGTCTTCCCGGAGAAGATAAATTCTCCAAGTCGGGTTGCAATC
AACGAGGCTTTGGGAATCCGGACGAGAACCCAATCGTCAGTAGTAGTGTT
TTTCAGTATCTGGTACCGTTATAG
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