mRNA_L-elsbetiae_contig1408.3047.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1408.3047.1
Unique NamemRNA_L-elsbetiae_contig1408.3047.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1408.3047.1 vs. uniprot
Match: D8LCB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB1_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 8.570e-28
Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:    1 MWGGEGTPTHDEEGRCLCVCADDSWSETNILGRASCVPVKAHLIYGWAGLVLSTAALCHAVYHLHRQLQFHRQQISASTSHIEQSRWKLHAAAVTFASFNMCYFFMVL 324
            +WGG G  T   +G C C C +++WSE NI+G  SCVP KAH+++G  G++++T +LCH+ Y L+RQ++ HRQ I+AS S +E+ R  LH   +  A   +CYF MVL
Sbjct:   10 LWGGTGISTVGADGACRCACGNETWSEYNIVGLPSCVPSKAHVVFGTVGVLMATTSLCHSAYQLYRQVKHHRQVITASISSVEKCRRWLHIVVIIHAVIGLCYFGMVL 117
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BLAST of mRNA_L-elsbetiae_contig1408.3047.1 vs. uniprot
Match: A0A6H5KM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM92_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.810e-26
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:    1 MWGGEGTPTHDEEGRCLCVCADDSWSETNILGRASCVPVKAHLIYGWAGLVLSTAALCHAVYHLHRQLQFHRQQISASTSHIEQSRWKLHAAAVTFASFNMCYFFMVL 324
            +WGG G  T   +G C C C D++WSE NILG  SCVP KAH ++G  G+ ++  +L HA Y L+RQ+++HRQ ++ASTS +E+ R  LH   +  A   +CYF MVL
Sbjct:   10 LWGGTGISTVGADGGCRCACGDETWSEYNILGLPSCVPSKAHAVFGAVGVFVTMTSLGHAAYQLYRQVKYHRQFMAASTSSVEKCRRWLHIVVIIHAVIGLCYFGMVL 117
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1408.3047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCB1_ECTSI8.570e-2846.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM92_9PHAE1.810e-2647.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1408contigL-elsbetiae_contig1408:21941..23634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size338
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.3546085-CDS-L-elsbetiae_contig1408:21940..220751622815558.3546085-CDS-L-elsbetiae_contig1408:21940..22075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1408 21941..22075 -
1691682958.7215402-CDS-L-elsbetiae_contig1408:21940..220751691682958.7215402-CDS-L-elsbetiae_contig1408:21940..22075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1408 21941..22075 -
1622815558.399039-CDS-L-elsbetiae_contig1408:23433..236341622815558.399039-CDS-L-elsbetiae_contig1408:23433..23634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1408 23434..23634 -
1691682958.7306635-CDS-L-elsbetiae_contig1408:23433..236341691682958.7306635-CDS-L-elsbetiae_contig1408:23433..23634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1408 23434..23634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1408.3047.1prot_L-elsbetiae_contig1408.3047.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1408 21941..23634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1408.3047.1

>prot_L-elsbetiae_contig1408.3047.1 ID=prot_L-elsbetiae_contig1408.3047.1|Name=mRNA_L-elsbetiae_contig1408.3047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MWGGEGTPTHDEEGRCLCVCADDSWSETNILGRASCVPVKAHLIYGWAGL
VLSTAALCHAVYHLHRQLQFHRQQISASTSHIEQSRWKLHAAAVTFASFN
MCYFFMVLAGFL
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mRNA from alignment at L-elsbetiae_contig1408:21941..23634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1408.3047.1 ID=mRNA_L-elsbetiae_contig1408.3047.1|Name=mRNA_L-elsbetiae_contig1408.3047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1694bp|location=Sequence derived from alignment at L-elsbetiae_contig1408:21941..23634- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGGGAGGGGAAGGGACCCCGACCCACGACGAGGAAGGGCGATGCCT
CTGTGTGTGCGCGGATGACAGCTGGTCCGAGACGAACATCCTCGGGCGCG
CCTCTTGTGTGCCTGTGAAGGCTCACCTTATCTATGGTTGGGCTGGTCTT
GTTCTCTCCACCGCAGCCCTATGTCATGCCGTGTATCATCTTCATCGCCA
GGTGAGCCAGACGCAGGAGCGGCGAGAACCAGTGTGGATATGGGTGTGTG
CGTGATCATGCTGTTCGATCGGCTACAATATTAACTTGGAGTGCATCTTA
CTATGTAATACAATACTTGCAGAATGACCTTACGTCGAACATCAACTACA
AGGATATATCTAGTCCTCCTTTTTTTTCCCTAGCTAGGATAACCACACAC
TCACCTATACCAATGCCCGGACGACTATTGGCAAGTTTTGTTTTACACAC
ACATTTTTGTTTGAGAACCACCCTCTCCCGGCAGTAGTCCACCTCGCCGC
GAAAAGGAATTATCTAGATCAATCGTACATACATACATACACACACTCGA
GCTACACGTTGTTGGTGGCGAATGGATGCCTATCGTATCGCATGTACATC
TCTCAGCAACCGTATGCACGGATGCACACATGCAGCATGACCGCCGCGCG
CTCTACAGCAAGCAGTATGTGCGCACAGCCTTGGCTGCGTGTGTACCTCA
CCGATCGTCCTCCTGTCGAGTACTACAACACGCATTGCATCCGTCGCACA
CCTTATTATGCAGAGACGTGTCTTGTTTGCAAGTCCGCTGCTTGAACAAT
CCGTGACAAAACGCGTACAGCGTGTGGTGTACAGAAGTAGTGCAGCGCAT
CCGACGTATGGCAATTCTCTCTGCTACGGAAGACTACCAACGGACAATAC
GGTCGTGCCACACCGGCGCCTCAGCGCCTCTTTCTAGTTCCAACAGCGTT
CGTGTCGAGGGCTTGCTCTGGCAAGCATTTTCAACTCACACCGGATCAAC
AAGTGGGAGAAAATACCAACGCCTACAAAATCAACACTGTGAACCACACT
TCGGGCAAAGGACCCTGTTTTTGGCTCGCGTGCAGAGACGTCGCGTGTAG
TCTATGCCTTCGCCATCCTGAAGCCGTGCGTCTTAGAGTCGCCACACGGA
GCAAACACACAAAAACAAAACTCTGAGTCTGGCCCCAGCACCGCATACAG
GCGCAGGGGCCTGTTTTCCCTAGCACATGTGCATAAAGTCTAGTAGTCTA
CATACGGCCCTTTGTATTCAATTGCAAGATTAAATGCTCGCATCTCAGCC
CCTTCCTAGGTGCCTTCATATCCAATTTTCAGGCGCTCTGCCAAAGAAGA
ACGGCTTTTTCACTCCGGTGCTCTGAGCGCCTTCTCGAGGAAACACACCC
TAACACACTTCATAGGGTACTTCGCTATACACCGTACGTTCTCGGCTCCT
TACCGTCCAATGCGCACTCGGTAGACCATATGCGATCGTACGGGGTTCTG
CCAATCCAATTTTATGCGTTTGTCAACCTCCGCCCTCCCCCCCCCCGTGA
TGGAAACAGCTCCAGTTTCACCGGCAACAAATATCGGCTTCGACTTCACA
TATCGAGCAGTCCCGCTGGAAGTTGCACGCTGCAGCTGTCACTTTTGCCT
CCTTCAACATGTGTTACTTCTTCATGGTGCTTGCGGGCTTTCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1408:21941..23634-

>mRNA_L-elsbetiae_contig1408.3047.1 ID=mRNA_L-elsbetiae_contig1408.3047.1|Name=mRNA_L-elsbetiae_contig1408.3047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig1408:21941..23634- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGGGAGGGGAAGGGACCCCGACCCACGACGAGGAAGGGCGATGCCT
CTGTGTGTGCGCGGATGACAGCTGGTCCGAGACGAACATCCTCGGGCGCG
CCTCTTGTGTGCCTGTGAAGGCTCACCTTATCTATGGTTGGGCTGGTCTT
GTTCTCTCCACCGCAGCCCTATGTCATGCCGTGTATCATCTTCATCGCCA
GATGTGGGGAGGGGAAGGGACCCCGACCCACGACGAGGAAGGGCGATGCC
TCTGTGTGTGCGCGGATGACAGCTGGTCCGAGACGAACATCCTCGGGCGC
GCCTCTTGTGTGCCTGTGAAGGCTCACCTTATCTATGGTTGGGCTGGTCT
TGTTCTCTCCACCGCAGCCCTATGTCATGCCGTGTATCATCTTCATCGCC
AGCTCCAGTTTCACCGGCAACAAATATCGGCTTCGACTTCACATATCGAG
CAGTCCCGCTGGAAGTTGCACGCTGCAGCTGTCACTTTTGCCTCCTTCAA
CATGTGTTACTTCTTCATGGTGCTTGCGGGCTTTCTACTCCAGTTTCACC
GGCAACAAATATCGGCTTCGACTTCACATATCGAGCAGTCCCGCTGGAAG
TTGCACGCTGCAGCTGTCACTTTTGCCTCCTTCAACATGTGTTACTTCTT
CATGGTGCTTGCGGGCTTTCTA
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