mRNA_L-elsbetiae_contig14071.3042.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14071.3042.1
Unique NamemRNA_L-elsbetiae_contig14071.3042.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14071.3042.1 vs. uniprot
Match: D8LC55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC55_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 2.390e-55
Identity = 116/198 (58.59%), Postives = 140/198 (70.71%), Query Frame = 1 
Query:    1 GVSSRVEGVSSRMSLRAKDMLA-ISAGGXXXXXXXXXXXXASGTGSTIGNGPTSVFNSSSXXXXXXILSGIADDAAAAAAGPTPADKTEVSRLVSSLGSSPQLAEKVVAMSKLSTLLGDGAGRSSQDVLHSVAVPLVAVLHDAEHFDPFFANACIACAQQLLEAQGDAFAKELVEAGTARALIPLLHPRFELMRIEGL 591
            GVSSRVEGVSSRMSLRAKDML+ ++                S  G+   NG   +FN+ +      IL+GIAD+  A        D+ EVSRLV+S+ S+ QLAEK+VAM+KLS +LGD AG++SQ  L SVA  LVA+L DAE FDPFFANACIACAQQLLEAQG+AFA E+V AG A+ALIPLL P+FEL+RIEGL
Sbjct:   39 GVSSRVEGVSSRMSLRAKDMLSSVADDHDNNNVSSSPHSNGSAAGAARSNGTLGLFNNGNSSSASGILNGIADEVPAXXXXXXX-DEAEVSRLVASMDSTTQLAEKMVAMNKLSNVLGDDAGQASQMALCSVAEALVAMLRDAEFFDPFFANACIACAQQLLEAQGEAFAAEMVNAGAAQALIPLLDPKFELIRIEGL 235
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BLAST of mRNA_L-elsbetiae_contig14071.3042.1 vs. uniprot
Match: A0A6H5JB63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB63_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 8.840e-55
Identity = 118/198 (59.60%), Postives = 144/198 (72.73%), Query Frame = 1 
Query:    1 GVSSRVEGVSSRMSLRAKDMLA-ISAGGXXXXXXXXXXXXASGTGSTIGNGPTSVFNSSSXXXXXXILSGIADDAAAAAAGPTPADKTEVSRLVSSLGSSPQLAEKVVAMSKLSTLLGDGAGRSSQDVLHSVAVPLVAVLHDAEHFDPFFANACIACAQQLLEAQGDAFAKELVEAGTARALIPLLHPRFELMRIEGL 591
            GVSSRVEGVSSRMSLRAKDML+ ++                S +G+   NG   +FN+ S      IL+GIAD+  A  A     D+ EVSRLV+S+ S+ QLAEK+VAM+KLS +LGDGAG++SQ  L SVA  LVA+L DAE+FDPFFANACIACAQQLLEAQG+AFA E+V AG A+AL+PLL P+FEL+RIEGL
Sbjct:   39 GVSSRVEGVSSRMSLRAKDMLSSVADDHDNYNGSSSPHSNGSASGAARSNGTLGLFNNGSSSSASGILNGIADEVPAVPA----VDEAEVSRLVASMDSTTQLAEKMVAMNKLSNVLGDGAGQASQSALCSVAEVLVALLRDAEYFDPFFANACIACAQQLLEAQGEAFAAEMVNAGAAQALLPLLDPKFELIRIEGL 232
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14071.3042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC55_ECTSI2.390e-5558.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB63_9PHAE8.840e-5559.60Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14071contigL-elsbetiae_contig14071:1280..4471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size591
Cds size591
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14071.3042.1prot_L-elsbetiae_contig14071.3042.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14071 1280..4471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.9982944-CDS-L-elsbetiae_contig14071:1279..15431622815557.9982944-CDS-L-elsbetiae_contig14071:1279..1543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14071 1280..1543 +
1691682958.5213437-CDS-L-elsbetiae_contig14071:1279..15431691682958.5213437-CDS-L-elsbetiae_contig14071:1279..1543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14071 1280..1543 +
1622815558.0141127-CDS-L-elsbetiae_contig14071:2382..25151622815558.0141127-CDS-L-elsbetiae_contig14071:2382..2515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14071 2383..2515 +
1691682958.5316014-CDS-L-elsbetiae_contig14071:2382..25151691682958.5316014-CDS-L-elsbetiae_contig14071:2382..2515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14071 2383..2515 +
1622815558.0327277-CDS-L-elsbetiae_contig14071:3946..40411622815558.0327277-CDS-L-elsbetiae_contig14071:3946..4041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14071 3947..4041 +
1691682958.5397527-CDS-L-elsbetiae_contig14071:3946..40411691682958.5397527-CDS-L-elsbetiae_contig14071:3946..4041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14071 3947..4041 +
1622815558.0459006-CDS-L-elsbetiae_contig14071:4372..44711622815558.0459006-CDS-L-elsbetiae_contig14071:4372..4471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14071 4373..4471 +
1691682958.5500588-CDS-L-elsbetiae_contig14071:4372..44711691682958.5500588-CDS-L-elsbetiae_contig14071:4372..4471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14071 4373..4471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14071.3042.1

>prot_L-elsbetiae_contig14071.3042.1 ID=prot_L-elsbetiae_contig14071.3042.1|Name=mRNA_L-elsbetiae_contig14071.3042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=197bp
GVSSRVEGVSSRMSLRAKDMLAISAGGDDSGGGGGGGGGASGTGSTIGNG
PTSVFNSSSNSSASGILSGIADDAAAAAAGPTPADKTEVSRLVSSLGSSP
QLAEKVVAMSKLSTLLGDGAGRSSQDVLHSVAVPLVAVLHDAEHFDPFFA
NACIACAQQLLEAQGDAFAKELVEAGTARALIPLLHPRFELMRIEGL
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mRNA from alignment at L-elsbetiae_contig14071:1280..4471+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14071.3042.1 ID=mRNA_L-elsbetiae_contig14071.3042.1|Name=mRNA_L-elsbetiae_contig14071.3042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3192bp|location=Sequence derived from alignment at L-elsbetiae_contig14071:1280..4471+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGTCTCTTCCAGGGTGGAAGGCGTTTCCTCGCGAATGTCGCTGCGCGC
GAAGGACATGCTGGCGATCTCGGCGGGCGGCGACGACAGCGGCGGCGGCG
GGGGCGGCGGCGGCGGCGCGAGCGGCACCGGCTCCACCATCGGCAACGGC
CCTACGAGCGTGTTCAACAGCAGCAGTAACAGCAGCGCCAGCGGCATCCT
CAGCGGCATCGCGGACGACGCGGCGGCGGCGGCGGCGGGTCCAACGCCGG
CGGACAAAACCGAGGTTGGTTTGTTTCGCGACGAACAAAATCATTTTTTT
TCCTGTGTGGTATGTAGTATTTTGCACCATACTTCGGAGTGTTTGGTTTT
TGGGGGCTCCTCGTCGGCATGCCTGTGCTCCCAGACCCCAAAAAACAGCG
GGTGCTGTGCCGTTGTTTCCTTTTCGGCGGCGGTGTGCTCCTTGTCGCCC
GAACGGTTGTGTCAAGCAGCGGCAGTTTTTGTTTTGGTCGGCGAGATGTG
ACGAAACGAGGTCGGTCGGTCGTCAACACCGGCTTTGTTTTGTACAATTT
GCGGGGGGTGGGATTAGTTGATCAGGGGCGGGAAGCATAGGCGTGGGGGC
AAGACATGGAGGGTTAGCGTTGCCGCGGAATCCCCGGCGCTGCTCCCAAC
GGACGCAGGCGCTACTCTGATGTTAGCACCCAGGCTCGGGAAATCCACTG
TCCGTTGGCTCTCGTCCTGCTCGCCAAGCTGTTCGTCCTTTGAGCTGTTG
TCGTCGTCTGTGCTTCCCCCCGACCGACAGTTTTGTAAGGTGGCGTCCTC
GTGTTGGAGTTACACATTTACTTCGGGTTTATTGTAGATAAAAACGAAAC
GTAATATTACGTCACTAAATAATATGGAATACATACCGATTAAATCTCAC
GGAGTCCCGTCTCAATGCGGGTTAGGTTCCATTTTCGATTAACTGCTGTT
TCTCTTCCGAAACGGAAAACAAACAAACACGCACTGCTCGCGCTTCGTGA
CAACTAGGTAAATCCCCGATCGTCGCCTTTTTTTTTTTTTTTTCCACCCA
CCCCGTGTTTCATTTTCTCGGAAACTTCTTTGGAACGCACCCACCGCCGG
CAGGTCTCGCGGCTGGTCTCATCGTTGGGCTCGAGCCCACAGCTGGCTGA
AAAGGTGGTTGCCATGAGCAAGCTCTCGACCCTCCTGGGCGATGGCGCGG
GGAGGAGTTCGCAGGACGTTCTGCACTCCGTGGCCGGTGAGAGCCGCTGC
CACTTTTCGCTGCTGCTGCTGCTGCTGCTGAACCGAACCGAACCGAACCG
AACCGCAAAAAAACAACAAAAGGACTTTCCAGTGACGACGGACACTCCGT
GGCCCGGATCCACTGCTGCTGCTGCTGCTGCTGCTGCTTAGCGGTAGCTC
GGTCGGTGCCCACCCGCTTCTGTGCCGTGTTCCGCGGTGGGGTTGCCTGC
GTTTGCATCATACAACACCCCGGTTGGGTCGTCTAGCTAGTCGTACATAG
TGGAGGAAGGGGGCCGGTGGGGCAGACGACCAATAATAAGCCAATAACGG
GAGGAAAAAAACAAAACAGAAAAACAAAAAACAAAAATAAAACCGCATGA
TGGGACTTGGAAACTCCAGCACCCGGCACCAGAAGAAGGAACACGGGGGG
CCTTTTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
TGTCGCTCTCTGGCGCCGCTTTGTCTTCTGCCCCGTGACCGTCACGCCCG
CCCGGGCTTGTCCGAAAGCAGCGCGCGCATGACGCCGCTCAAAACCTCCA
CCGTGGGCATCGTCCGGGGGAGTCCGCATGCTGCTGATGACAGCCAGTCC
GCATGCTGCTGATGACAGCGAGTCCTGCTTTGCGTATAATAAAGTGTTGG
GTTCCATCCGTCCGAAAATGTCGATGACCGCCGGGAGCTGGAAGCCCCAT
CTTGTTGGGGCAGAACAGAACCAACCCATTCGGGGCCCTGGAAACGAGGA
ATGTTAATGTTGTGCGGGGTCAACGTGCCGTTCAAGTACCAGCACGGAAC
AAGTCGCTTCATCCTGCCCCACGTGCTTCGTCGAATGGAGACTGCTGTGG
ACGTGTGGTTTAGTTGGACACACATGAACGTTGCCGGAAACTAGGTGTAC
TTCTTCGGTCCTTGATGTACGTACATATATGCCTTTCATTTCCTGCGTGT
GTTTCTTAAATAGGATCCTTTTTGATGGCTCGAGCACTTTTGTGACCACC
GGTCGTGAGTTGCTGAATTTGTTGGGATTAGCAATCTCGATGATACGGGC
TAATATGAAGAAAACAACAACAGCAACAGCAACAACAACATCAACAACGT
GCTTACCGTATACGACGCAAGATAACACATCCCCTGGACCGATTTTCAAA
GCTCAAGTACTCCACAGCGAGAAGAGTAACAATCCCGAAGAGGATGGCGT
TGGAAAGATCTCATCAAGGGCTGTCCGAAAACGTGTCGTTTGGTATTAGA
ATCAAACTCGTTGCGGAGTAACCGAGCTTTGAAAATCGGTCCAGGGGGTG
TGTCATCTTGTGTCGCACACGGTAAACGAAATCGATTTACTCTACTACTA
CTGTAACGTAACATGAGAACCCCCCCCCCCCCCCCGCCCCGTGTATCACT
CCTGTCCTGGAGCGCAGTACCGCTGGTGGCGGTGCTGCATGATGCGGAGC
ACTTCGACCCATTCTTCGCCAACGCCTGCATCGCCTGCGCGCAGCAGCTT
TTGGAGGCCCAGGTGAAAGAACAGCCCGGGGTATGCATCCATGCACGTCG
GATGGTGTCTTGTCCCGTCACCATGGTGGAGGAACGAAGCACACTTTGTT
GGAAGACATTCCCATTCCCGATGCCCACCGCAACGCTCTCCAACGAAACC
CGAACCCCGTGACCCCACAAGCACCCTGTCCCCTGTCCCTCCCCAACGAC
GCCTGTTCCACACCGGGGCCCCAGCCACTTCATGGGCTTTTTTCCCAATT
GTGTCCCGGAACGGCCGTCGATGATGGTGTTGGTATGTTTATTTCAAGCG
CTCGTTTGGGCGTTATCTTTTGTCTTTCACCTCGTGGCGGCAGGGAGACG
CCTTCGCGAAGGAGCTGGTGGAAGCGGGAACGGCTCGGGCACTGATACCA
TTGCTCCACCCTAGGTTCGAGCTCATGCGCATCGAGGGCTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14071:1280..4471+

>mRNA_L-elsbetiae_contig14071.3042.1 ID=mRNA_L-elsbetiae_contig14071.3042.1|Name=mRNA_L-elsbetiae_contig14071.3042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1182bp|location=Sequence derived from alignment at L-elsbetiae_contig14071:1280..4471+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGTCTCTTCCAGGGTGGAAGGCGTTTCCTCGCGAATGTCGCTGCGCGC
GAAGGACATGCTGGCGATCTCGGCGGGCGGCGACGACAGCGGCGGCGGCG
GGGGCGGCGGCGGCGGCGCGAGCGGCACCGGCTCCACCATCGGCAACGGC
CCTACGAGCGTGTTCAACAGCAGCAGTAACAGCAGCGCCAGCGGCATCCT
CAGCGGCATCGCGGACGACGCGGCGGCGGCGGCGGCGGGTCCAACGCCGG
CGGACAAAACCGAGGGTGTCTCTTCCAGGGTGGAAGGCGTTTCCTCGCGA
ATGTCGCTGCGCGCGAAGGACATGCTGGCGATCTCGGCGGGCGGCGACGA
CAGCGGCGGCGGCGGGGGCGGCGGCGGCGGCGCGAGCGGCACCGGCTCCA
CCATCGGCAACGGCCCTACGAGCGTGTTCAACAGCAGCAGTAACAGCAGC
GCCAGCGGCATCCTCAGCGGCATCGCGGACGACGCGGCGGCGGCGGCGGC
GGGTCCAACGCCGGCGGACAAAACCGAGGTCTCGCGGCTGGTCTCATCGT
TGGGCTCGAGCCCACAGCTGGCTGAAAAGGTGGTTGCCATGAGCAAGCTC
TCGACCCTCCTGGGCGATGGCGCGGGGAGGAGTTCGCAGGACGTTCTGCA
CTCCGTGGCCGGTCTCGCGGCTGGTCTCATCGTTGGGCTCGAGCCCACAG
CTGGCTGAAAAGGTGGTTGCCATGAGCAAGCTCTCGACCCTCCTGGGCGA
TGGCGCGGGGAGGAGTTCGCAGGACGTTCTGCACTCCGTGGCCGTACCGC
TGGTGGCGGTGCTGCATGATGCGGAGCACTTCGACCCATTCTTCGCCAAC
GCCTGCATCGCCTGCGCGCAGCAGCTTTTGGAGGCCCAGTACCGCTGGTG
GCGGTGCTGCATGATGCGGAGCACTTCGACCCATTCTTCGCCAACGCCTG
CATCGCCTGCGCGCAGCAGCTTTTGGAGGCCCAGGGAGACGCCTTCGCGA
AGGAGCTGGTGGAAGCGGGAACGGCTCGGGCACTGATACCATTGCTCCAC
CCTAGGTTCGAGCTCATGCGCATCGAGGGCTTGGGAGACGCCTTCGCGAA
GGAGCTGGTGGAAGCGGGAACGGCTCGGGCACTGATACCATTGCTCCACC
CTAGGTTCGAGCTCATGCGCATCGAGGGCTTG
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