mRNA_L-elsbetiae_contig14070.3041.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14070.3041.1
Unique NamemRNA_L-elsbetiae_contig14070.3041.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14070.3041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14070contigL-elsbetiae_contig14070:387..1990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size925
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14070.3041.1prot_L-elsbetiae_contig14070.3041.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14070 988..1770 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.907197-UTR-L-elsbetiae_contig14070:386..4781622815557.907197-UTR-L-elsbetiae_contig14070:386..478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14070 387..478 +
1691682958.4614797-UTR-L-elsbetiae_contig14070:386..4781691682958.4614797-UTR-L-elsbetiae_contig14070:386..478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14070 387..478 +
1622815557.9208245-UTR-L-elsbetiae_contig14070:962..9871622815557.9208245-UTR-L-elsbetiae_contig14070:962..987Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14070 963..987 +
1691682958.4724245-UTR-L-elsbetiae_contig14070:962..9871691682958.4724245-UTR-L-elsbetiae_contig14070:962..987Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14070 963..987 +
1622815557.960168-UTR-L-elsbetiae_contig14070:1770..19901622815557.960168-UTR-L-elsbetiae_contig14070:1770..1990Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14070 1771..1990 +
1691682958.5094123-UTR-L-elsbetiae_contig14070:1770..19901691682958.5094123-UTR-L-elsbetiae_contig14070:1770..1990Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14070 1771..1990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.9363801-CDS-L-elsbetiae_contig14070:987..11581622815557.9363801-CDS-L-elsbetiae_contig14070:987..1158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14070 988..1158 +
1691682958.4847631-CDS-L-elsbetiae_contig14070:987..11581691682958.4847631-CDS-L-elsbetiae_contig14070:987..1158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14070 988..1158 +
1622815557.9488034-CDS-L-elsbetiae_contig14070:1353..17701622815557.9488034-CDS-L-elsbetiae_contig14070:1353..1770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14070 1354..1770 +
1691682958.5006373-CDS-L-elsbetiae_contig14070:1353..17701691682958.5006373-CDS-L-elsbetiae_contig14070:1353..1770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14070 1354..1770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14070.3041.1

>prot_L-elsbetiae_contig14070.3041.1 ID=prot_L-elsbetiae_contig14070.3041.1|Name=mRNA_L-elsbetiae_contig14070.3041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
MPVQVPGREKLTRSFLRGRSTEDLERWTRHYHVEEYEASREDMIQRLAEF
RDIMYRKGGGGTEAANITGKKRPADNPPADNKKTKTTPSFLAKAKEKAAR
EKLKKEKAAREKLKKEKAALEKVKKEMDALEKVKEKAARESKWADYEEAL
EEQSEAQKWRDSAVLALEEAKREDGDSLLALSRANAKVKKLQGQL*
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mRNA from alignment at L-elsbetiae_contig14070:387..1990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14070.3041.1 ID=mRNA_L-elsbetiae_contig14070.3041.1|Name=mRNA_L-elsbetiae_contig14070.3041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1604bp|location=Sequence derived from alignment at L-elsbetiae_contig14070:387..1990+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGTGATCACCGTGGTGAGCACCATGGGGACCCATGGTGATGGCCATGG
GGACCCATGGTGACAATTCCAATAATGTACATGACCTTCAAGGTATGCCT
TGCCATACGTATACGTAAGGACCGGTTCGTTTATCGTTTCTTTTGCGGCA
AACCTTGATGGAGATGTTGCAAGGCGAAGGTTAGGTTGAAGCCTCGCTGG
CACGCATTTAAAAATATACATCCAGAGTGTTTTCTTCCTTCTCTGGTGTT
TCTCGGGTGTTATACATACGAGCAGGATACCCTGGGGTACGTTTTTAAGA
GTTCTTCCAACTGGCGGTATTTCTGTTTTTTTGGAAGGGGTTCGACAAAG
GAATCTCAGCACGCAAAGCTCCGACGTAGCTATCATAAGTCGATGGATGT
TGGTGCATTATTTTTCAACACAAACTCAAGCAATTACCACGTGGCTTTGT
TTGCTTTCGGTCAATAAGGTGCTCCCGAGCGGTTTGTGAACATGAACGTA
TCCTTATTTAAACTTCTCTTTTCGCCGCTTGAACTCCGGTCTGCTCTTTG
TTTTTCCTGTGAAACATGTACAGCAGCACTTACGCCGAGGTCATCGGCAA
CATGCCAGTTCAAGTGCCCGGACGAGAGAAGCTGACGAGGTCATTCCTGA
GGGGCAGGAGCACGGAAGATCTGGAGCGCTGGACTAGACACTACCATGTT
GAAGAATACGAGGCATCCAGGGAGGACATGATCCAACGGCTGGCAGAATT
CAGGGACATCATGTACAGAAAGGTAGGCGGGTGTGAACTCAGCTTCATGT
ATTGTGGTGATGCAAACAGAGGCCGCCAATTGTCGTGTGCATACGCGGAA
CTTGGCCACACCCATACCTACGCCCCCTGGCGTGGCCCGAGCTCCCGAGG
GTAGGGTGACCTGTGCGCGGCACTTCTAACTGTATCACTAATCGCACCCG
CGCTCGTTCTTTCACAGGGTGGCGGAGGTACCGAGGCCGCCAACATCACC
GGCAAGAAGCGTCCCGCCGACAATCCGCCCGCCGACAACAAGAAGACCAA
AACGACTCCCTCCTTCTTGGCGAAGGCGAAGGAGAAAGCCGCCCGCGAGA
AGTTGAAGAAGGAGAAGGCCGCCCGCGAGAAGTTGAAGAAGGAGAAGGCC
GCCCTCGAGAAGGTGAAGAAGGAGATGGACGCCCTCGAAAAGGTGAAGGA
GAAAGCCGCCCGCGAGTCGAAGTGGGCTGACTATGAGGAAGCGTTGGAGG
AGCAGTCCGAAGCGCAGAAGTGGCGTGACAGCGCGGTTCTGGCGCTGGAA
GAAGCCAAGCGGGAGGACGGCGACTCTTTGCTCGCATTGTCGAGGGCCAA
CGCGAAGGTTAAGAAGCTGCAAGGCCAGCTTTGAGAAAGGCTCGGAAACG
ATGAATGACCGCGCTTGCTGTGAACCCCTATTTTTTGTAGGTTCTTTTGC
GTATTCAACTTCAGAAGGCTGAAGGGTATGAGGAGTCGAGCTGGCTGTGG
CGCAGCTGTCGAAGAGGAAACACTTTGCGTGAAAACCCTCGATCTTCCGA
ACCGATCGAGTCTAGCCACTCTTTTTATACGGCAGAAAACCTGAAGAACT
GGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14070:387..1990+

>mRNA_L-elsbetiae_contig14070.3041.1 ID=mRNA_L-elsbetiae_contig14070.3041.1|Name=mRNA_L-elsbetiae_contig14070.3041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig14070:387..1990+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAGTTCAAGTGCCCGGACGAGAGAAGCTGACGAGGTCATTCCTGAG
GGGCAGGAGCACGGAAGATCTGGAGCGCTGGACTAGACACTACCATGTTG
AAGAATACGAGGCATCCAGGGAGGACATGATCCAACGGCTGGCAGAATTC
AGGGACATCATGTACAGAAAGATGCCAGTTCAAGTGCCCGGACGAGAGAA
GCTGACGAGGTCATTCCTGAGGGGCAGGAGCACGGAAGATCTGGAGCGCT
GGACTAGACACTACCATGTTGAAGAATACGAGGCATCCAGGGAGGACATG
ATCCAACGGCTGGCAGAATTCAGGGACATCATGTACAGAAAGGGTGGCGG
AGGTACCGAGGCCGCCAACATCACCGGCAAGAAGCGTCCCGCCGACAATC
CGCCCGCCGACAACAAGAAGACCAAAACGACTCCCTCCTTCTTGGCGAAG
GCGAAGGAGAAAGCCGCCCGCGAGAAGTTGAAGAAGGAGAAGGCCGCCCG
CGAGAAGTTGAAGAAGGAGAAGGCCGCCCTCGAGAAGGTGAAGAAGGAGA
TGGACGCCCTCGAAAAGGTGAAGGAGAAAGCCGCCCGCGAGTCGAAGTGG
GCTGACTATGAGGAAGCGTTGGAGGAGCAGTCCGAAGCGCAGAAGTGGCG
TGACAGCGCGGTTCTGGCGCTGGAAGAAGCCAAGCGGGAGGACGGCGACT
CTTTGCTCGCATTGTCGAGGGCCAACGCGAAGGTTAAGAAGCTGCAAGGC
CAGCTTTGAGGTGGCGGAGGTACCGAGGCCGCCAACATCACCGGCAAGAA
GCGTCCCGCCGACAATCCGCCCGCCGACAACAAGAAGACCAAAACGACTC
CCTCCTTCTTGGCGAAGGCGAAGGAGAAAGCCGCCCGCGAGAAGTTGAAG
AAGGAGAAGGCCGCCCGCGAGAAGTTGAAGAAGGAGAAGGCCGCCCTCGA
GAAGGTGAAGAAGGAGATGGACGCCCTCGAAAAGGTGAAGGAGAAAGCCG
CCCGCGAGTCGAAGTGGGCTGACTATGAGGAAGCGTTGGAGGAGCAGTCC
GAAGCGCAGAAGTGGCGTGACAGCGCGGTTCTGGCGCTGGAAGAAGCCAA
GCGGGAGGACGGCGACTCTTTGCTCGCATTGTCGAGGGCCAACGCGAAGG
TTAAGAAGCTGCAAGGCCAGCTTTGA
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