mRNA_L-elsbetiae_contig1407.3038.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1407.3038.1
Unique NamemRNA_L-elsbetiae_contig1407.3038.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1407.3038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1407contigL-elsbetiae_contig1407:22560..23003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.5471623-CDS-L-elsbetiae_contig1407:22559..230031622815557.5471623-CDS-L-elsbetiae_contig1407:22559..23003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 22560..23003 +
1691682958.2902052-CDS-L-elsbetiae_contig1407:22559..230031691682958.2902052-CDS-L-elsbetiae_contig1407:22559..23003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 22560..23003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1407.3038.1prot_L-elsbetiae_contig1407.3038.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1407 22560..23003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1407.3038.1

>prot_L-elsbetiae_contig1407.3038.1 ID=prot_L-elsbetiae_contig1407.3038.1|Name=mRNA_L-elsbetiae_contig1407.3038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
AGQPSGCTRLTHACTRLWPGYSARSPHTQHTAGRIVMRANEAGYLFSDSF
FLGLAHTPARTSPQSAPCAILTSRSCLRWERALRLRSSCGRPWASVLHRT
GDLLSPAARVANVKRATSAAATPAAVRLTFGLTGRMEVNLGRCTRSF*
back to top

mRNA from alignment at L-elsbetiae_contig1407:22560..23003+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1407.3038.1 ID=mRNA_L-elsbetiae_contig1407.3038.1|Name=mRNA_L-elsbetiae_contig1407.3038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig1407:22560..23003+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGTCAACCCTCTGGATGTACCCGACTGACACATGCATGTACCCGGTT
ATGGCCGGGCTACTCAGCCAGAAGCCCACACACGCAGCACACCGCCGGGC
GCATCGTCATGCGCGCGAACGAGGCGGGGTATTTATTTTCGGATTCCTTT
TTTCTGGGCCTCGCGCACACGCCCGCACGGACTAGTCCGCAATCAGCACC
ATGTGCGATACTGACCAGCCGCAGCTGCTTGAGGTGGGAGCGTGCTTTGC
GACTACGAAGCTCCTGCGGTCGGCCGTGGGCGAGCGTCTTGCACAGGACG
GGCGATCTTTTGTCGCCAGCGGCACGGGTGGCCAACGTCAAAAGGGCTAC
AAGTGCGGCGGCTACACCGGCGGCTGTCCGGTTAACGTTCGGGCTTACCG
GAAGAATGGAGGTGAACCTTGGAAGGTGCACACGGTCGTTCTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1407:22560..23003+

>mRNA_L-elsbetiae_contig1407.3038.1 ID=mRNA_L-elsbetiae_contig1407.3038.1|Name=mRNA_L-elsbetiae_contig1407.3038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig1407:22560..23003+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGTCAACCCTCTGGATGTACCCGACTGACACATGCATGTACCCGGTT
ATGGCCGGGCTACTCAGCCAGAAGCCCACACACGCAGCACACCGCCGGGC
GCATCGTCATGCGCGCGAACGAGGCGGGGTATTTATTTTCGGATTCCTTT
TTTCTGGGCCTCGCGCACACGCCCGCACGGACTAGTCCGCAATCAGCACC
ATGTGCGATACTGACCAGCCGCAGCTGCTTGAGGTGGGAGCGTGCTTTGC
GACTACGAAGCTCCTGCGGTCGGCCGTGGGCGAGCGTCTTGCACAGGACG
GGCGATCTTTTGTCGCCAGCGGCACGGGTGGCCAACGTCAAAAGGGCTAC
AAGTGCGGCGGCTACACCGGCGGCTGTCCGGTTAACGTTCGGGCTTACCG
GAAGAATGGAGGTGAACCTTGGAAGGTGCACACGGTCGTTCTAGGCTGGT
CAACCCTCTGGATGTACCCGACTGACACATGCATGTACCCGGTTATGGCC
GGGCTACTCAGCCAGAAGCCCACACACGCAGCACACCGCCGGGCGCATCG
TCATGCGCGCGAACGAGGCGGGGTATTTATTTTCGGATTCCTTTTTTCTG
GGCCTCGCGCACACGCCCGCACGGACTAGTCCGCAATCAGCACCATGTGC
GATACTGACCAGCCGCAGCTGCTTGAGGTGGGAGCGTGCTTTGCGACTAC
GAAGCTCCTGCGGTCGGCCGTGGGCGAGCGTCTTGCACAGGACGGGCGAT
CTTTTGTCGCCAGCGGCACGGGTGGCCAACGTCAAAAGGGCTACAAGTGC
GGCGGCTACACCGGCGGCTGTCCGGTTAACGTTCGGGCTTACCGGAAGAA
TGGAGGTGAACCTTGGAAGGTGCACACGGTCGTTCTAG
back to top