mRNA_L-elsbetiae_contig1407.3033.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1407.3033.1
Unique NamemRNA_L-elsbetiae_contig1407.3033.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1407.3033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1407contigL-elsbetiae_contig1407:4766..5540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size655
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1407.3033.1prot_L-elsbetiae_contig1407.3033.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1407 4821..5525 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.356642-UTR-L-elsbetiae_contig1407:4765..48201622815557.356642-UTR-L-elsbetiae_contig1407:4765..4820Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 4766..4820 +
1691682958.1838546-UTR-L-elsbetiae_contig1407:4765..48201691682958.1838546-UTR-L-elsbetiae_contig1407:4765..4820Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 4766..4820 +
1622815557.3868036-UTR-L-elsbetiae_contig1407:5525..55401622815557.3868036-UTR-L-elsbetiae_contig1407:5525..5540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 5526..5540 +
1691682958.2139566-UTR-L-elsbetiae_contig1407:5525..55401691682958.2139566-UTR-L-elsbetiae_contig1407:5525..5540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 5526..5540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.3672469-CDS-L-elsbetiae_contig1407:4820..52721622815557.3672469-CDS-L-elsbetiae_contig1407:4820..5272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 4821..5272 +
1691682958.193016-CDS-L-elsbetiae_contig1407:4820..52721691682958.193016-CDS-L-elsbetiae_contig1407:4820..5272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 4821..5272 +
1622815557.3770115-CDS-L-elsbetiae_contig1407:5392..55251622815557.3770115-CDS-L-elsbetiae_contig1407:5392..5525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 5393..5525 +
1691682958.2023017-CDS-L-elsbetiae_contig1407:5392..55251691682958.2023017-CDS-L-elsbetiae_contig1407:5392..5525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 5393..5525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1407.3033.1

>prot_L-elsbetiae_contig1407.3033.1 ID=prot_L-elsbetiae_contig1407.3033.1|Name=mRNA_L-elsbetiae_contig1407.3033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
MTAKLYMSIMQVQRAKIKLGPGGGPVFVPGTSDGDESSGETTESDEDDSS
DYVDKDSSAGNNAKRVREGRSTTNVSSGDGASGGGSSSVPDQAAVTSKKS
RPGPSPGGSRIWELTEVTEFKLEGAGDASPAAGKMSFYDQMDGGTASPSA
RTLIAEVIVPRRTAAGGEGIDIFVLWPASDATQAFLNRSGCVPF*
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mRNA from alignment at L-elsbetiae_contig1407:4766..5540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1407.3033.1 ID=mRNA_L-elsbetiae_contig1407.3033.1|Name=mRNA_L-elsbetiae_contig1407.3033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=775bp|location=Sequence derived from alignment at L-elsbetiae_contig1407:4766..5540+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCAAGAAAAGCTTCAATAATAAATACGGCGGGGTGTTCACATTCAAAA
AAGACATGACCGCTAAACTATACATGAGCATCATGCAGGTGCAGCGAGCC
AAGATTAAACTCGGTCCTGGCGGCGGTCCCGTCTTTGTTCCAGGAACGAG
CGACGGCGACGAGAGTAGTGGAGAGACAACGGAGAGTGACGAAGACGACA
GCTCCGACTACGTCGACAAAGACTCCAGTGCCGGGAACAATGCCAAGCGA
GTGCGCGAGGGACGGAGCACCACCAACGTGTCCTCTGGTGACGGAGCGAG
TGGAGGCGGGAGTAGCAGCGTGCCCGACCAGGCGGCGGTCACTTCCAAGA
AAAGCAGGCCCGGGCCCAGTCCGGGAGGGAGCCGCATTTGGGAGCTGACT
GAGGTGACGGAGTTCAAGTTAGAAGGCGCCGGGGACGCATCGCCAGCTGC
CGGAAAGATGAGCTTTTACGATCAGATGGATGGTGGTACAGCCAGCCCGA
GCGCAAGGTACGTTTTGTTTTATTCTTGGTGTAGAGTGTACGTGTTTTGC
ATTTTCTGTGTTTAATTGGGTTTTTATATTGTAGTCTGAACATCACACAC
TCCCCCCCTTCTTGCCGGCGCACACAGGACGCTGATTGCAGAGGTCATCG
TTCCACGGCGAACAGCGGCGGGCGGGGAGGGAATCGACATATTTGTATTG
TGGCCTGCATCGGACGCCACACAGGCTTTTTTGAATCGCTCGGGTTGTGT
GCCGTTTTAACGGCCATAATTGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1407:4766..5540+

>mRNA_L-elsbetiae_contig1407.3033.1 ID=mRNA_L-elsbetiae_contig1407.3033.1|Name=mRNA_L-elsbetiae_contig1407.3033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig1407:4766..5540+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGCTAAACTATACATGAGCATCATGCAGGTGCAGCGAGCCAAGAT
TAAACTCGGTCCTGGCGGCGGTCCCGTCTTTGTTCCAGGAACGAGCGACG
GCGACGAGAGTAGTGGAGAGACAACGGAGAGTGACGAAGACGACAGCTCC
GACTACGTCGACAAAGACTCCAGTGCCGGGAACAATGCCAAGCGAGTGCG
CGAGGGACGGAGCACCACCAACGTGTCCTCTGGTGACGGAGCGAGTGGAG
GCGGGAGTAGCAGCGTGCCCGACCAGGCGGCGGTCACTTCCAAGAAAAGC
AGGCCCGGGCCCAGTCCGGGAGGGAGCCGCATTTGGGAGCTGACTGAGGT
GACGGAGTTCAAGTTAGAAGGCGCCGGGGACGCATCGCCAGCTGCCGGAA
AGATGAGCTTTTACGATCAGATGGATGGTGGTACAGCCAGCCCGAGCGCA
AGATGACCGCTAAACTATACATGAGCATCATGCAGGTGCAGCGAGCCAAG
ATTAAACTCGGTCCTGGCGGCGGTCCCGTCTTTGTTCCAGGAACGAGCGA
CGGCGACGAGAGTAGTGGAGAGACAACGGAGAGTGACGAAGACGACAGCT
CCGACTACGTCGACAAAGACTCCAGTGCCGGGAACAATGCCAAGCGAGTG
CGCGAGGGACGGAGCACCACCAACGTGTCCTCTGGTGACGGAGCGAGTGG
AGGCGGGAGTAGCAGCGTGCCCGACCAGGCGGCGGTCACTTCCAAGAAAA
GCAGGCCCGGGCCCAGTCCGGGAGGGAGCCGCATTTGGGAGCTGACTGAG
GTGACGGAGTTCAAGTTAGAAGGCGCCGGGGACGCATCGCCAGCTGCCGG
AAAGATGAGCTTTTACGATCAGATGGATGGTGGTACAGCCAGCCCGAGCG
CAAGGACGCTGATTGCAGAGGTCATCGTTCCACGGCGAACAGCGGCGGGC
GGGGAGGGAATCGACATATTTGTATTGTGGCCTGCATCGGACGCCACACA
GGCTTTTTTGAATCGCTCGGGTTGTGTGCCGTTTTAAGACGCTGATTGCA
GAGGTCATCGTTCCACGGCGAACAGCGGCGGGCGGGGAGGGAATCGACAT
ATTTGTATTGTGGCCTGCATCGGACGCCACACAGGCTTTTTTGAATCGCT
CGGGTTGTGTGCCGTTTTAA
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