mRNA_L-elsbetiae_contig14052.3025.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14052.3025.1
Unique NamemRNA_L-elsbetiae_contig14052.3025.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14052.3025.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.400e-18
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 3 
Query:  186 MAQTDRDALLALYTATDGPNWKNKTNWNTNADLSKWYGVKLNGEGRVAALFLNGNNLR 359
            MA TDRD L+ALY ATDGPNWKNKTNW+TNADLS W+GVK + +GRV  L L+ N LR
Sbjct:    1 MAPTDRDVLVALYNATDGPNWKNKTNWDTNADLSDWHGVKADDQGRVVKLSLSANKLR 58
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BLAST of mRNA_L-elsbetiae_contig14052.3025.1 vs. uniprot
Match: D8LFJ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ9_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.230e-16
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 3 
Query:  177 PSTMAQTDRDALLALYTATDGPNWKNKTNWNTNADLSKWYGVKLNGEGRVAALFLNGNNLR 359
            P TMAQTDR+AL+ALYTA  G  W+N  NWNT+A LS+W+GV++N +GRV  LFL  NNL+
Sbjct:   22 PYTMAQTDREALVALYTAIGGAKWRNNRNWNTSAALSQWHGVEVNSQGRVVNLFLWDNNLQ 82
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BLAST of mRNA_L-elsbetiae_contig14052.3025.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.720e-15
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 3 
Query:  183 TMAQTDRDALLALYTATDGPNWKNKTNWNTNADLSKWYGVKLNGEGRVAALFLNGNNLR 359
            TMAQ DR+AL+ALY AT G  W+NK NWNT A LS+WYGV+++ +GRV  L L GNNL+
Sbjct:   95 TMAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGRVVTLSLAGNNLQ 153
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BLAST of mRNA_L-elsbetiae_contig14052.3025.1 vs. uniprot
Match: D8LL09_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL09_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.370e-15
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 3 
Query:  180 STMAQTDRDALLALYTATDGPNWKNKTNWNTNADLSKWYGVKLNGEGRVAALFLNGNNLR 359
            STM QTDRDAL+ALY A  G NWKN  NWN +ADLSKW+G+ +N +GRV  + L  NNL+
Sbjct:   49 STMPQTDRDALVALYDAAGGFNWKNNGNWNADADLSKWHGININDQGRVVEVHLAANNLQ 108
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BLAST of mRNA_L-elsbetiae_contig14052.3025.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 4.300e-15
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:  186 MAQTDRDALLALYTATDGPNWKNKTNWNTNADLSKWYGVKLNGEGRVAALFLNGNNLR 359
            MA TD DAL+ALY ATDG NWK   NW T+ DLS+WYGV+LN +GRVA L L  NNLR
Sbjct:    1 MAATDYDALVALYHATDGANWKQNRNWITDTDLSQWYGVELNDQGRVACLNLYSNNLR 58
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BLAST of mRNA_L-elsbetiae_contig14052.3025.1 vs. uniprot
Match: A0A6H5JX36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.600e-15
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 3 
Query:  186 MAQTDRDALLALYTATDGPNWKNKTNWNTNADLSKWYGVKLNGEGRVAALFLNGNNLR 359
            MA TDRDAL+ALY AT+G  W    NWNT A LS+W+GV +N +GRV AL L  NNL+
Sbjct:    1 MASTDRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALELAENNLQ 58
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BLAST of mRNA_L-elsbetiae_contig14052.3025.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.490e-14
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  186 MAQTDRDALLALYTATDGPNWKNKTNWNTNADLSKWYGVKLNGEGRVAALFLNGNNLR 359
            MA TDRD L+ALY AT+G NW+N  NW T+ADLS+W+GV +N +GRV  L L+ NNLR
Sbjct:    1 MASTDRDVLVALYNATEGANWQNSINWGTDADLSQWFGVTVNHQGRVVRLDLSFNNLR 58
[Close]
BLAST of mRNA_L-elsbetiae_contig14052.3025.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.550e-14
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 3 
Query:  186 MAQTDRDALLALYTATDGPNWKNKTNWNTNADLSKWYGVKLNGEGRVAALFLNGNNL 356
            MAQTDRDAL+ALY AT G NW+   NW+T+ADL  W+GV +N +GRV  L L  NNL
Sbjct:    1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNL 57
[Close]
BLAST of mRNA_L-elsbetiae_contig14052.3025.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.780e-14
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 3 
Query:  171 KAPS-TMAQTDRDALLALYTATDGPNWKNKTNWNTNADLSKWYGVKLNGEGRVAALFLNGNNLR 359
            KAP  TMAQTDR AL+ALY AT G  WKN  NW T+A LS+W+GV++N +GRV  L L  NNLR
Sbjct:   65 KAPFYTMAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLR 128
[Close]
BLAST of mRNA_L-elsbetiae_contig14052.3025.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.030e-13
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 3 
Query:  180 STMAQTDRDALLALYTATDGPNWKNKTNWNTNADLSKWYGVKLNGEGRVAALFLNGNNLR 359
            ST   TDR AL+AL+ AT G NWK  T WNT+A L +WYGV++N  GRV  L L  NNL+
Sbjct:    6 STKMSTDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLK 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14052.3025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKS5_ECTSI3.400e-1870.69LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LFJ9_ECTSI2.230e-1662.30Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KVC7_9PHAE1.720e-1562.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL09_ECTSI2.370e-1561.67Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LLG1_ECTSI4.300e-1567.24LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JX36_9PHAE4.600e-1560.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJV1_ECTSI1.490e-1462.07LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JK91_9PHAE1.550e-1461.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFK2_ECTSI2.780e-1462.50Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K3D6_9PHAE1.030e-1356.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14052contigL-elsbetiae_contig14052:2316..3142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue4.4e-14
Seed eggNOG ortholog2880.D8LLG1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size361
Cds size174
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14052.3025.1prot_L-elsbetiae_contig14052.3025.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14052 2969..3142 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.2471333-UTR-L-elsbetiae_contig14052:2315..24881622815556.2471333-UTR-L-elsbetiae_contig14052:2315..2488Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14052 2316..2488 +
1691682957.424274-UTR-L-elsbetiae_contig14052:2315..24881691682957.424274-UTR-L-elsbetiae_contig14052:2315..2488Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14052 2316..2488 +
1622815556.2608402-UTR-L-elsbetiae_contig14052:2956..29681622815556.2608402-UTR-L-elsbetiae_contig14052:2956..2968Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14052 2957..2968 +
1691682957.4353545-UTR-L-elsbetiae_contig14052:2956..29681691682957.4353545-UTR-L-elsbetiae_contig14052:2956..2968Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14052 2957..2968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.2719436-CDS-L-elsbetiae_contig14052:2968..31421622815556.2719436-CDS-L-elsbetiae_contig14052:2968..3142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14052 2969..3142 +
1691682957.4486842-CDS-L-elsbetiae_contig14052:2968..31421691682957.4486842-CDS-L-elsbetiae_contig14052:2968..3142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14052 2969..3142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14052.3025.1

>prot_L-elsbetiae_contig14052.3025.1 ID=prot_L-elsbetiae_contig14052.3025.1|Name=mRNA_L-elsbetiae_contig14052.3025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=58bp
MAQTDRDALLALYTATDGPNWKNKTNWNTNADLSKWYGVKLNGEGRVAAL
FLNGNNLR
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mRNA from alignment at L-elsbetiae_contig14052:2316..3142+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14052.3025.1 ID=mRNA_L-elsbetiae_contig14052.3025.1|Name=mRNA_L-elsbetiae_contig14052.3025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=827bp|location=Sequence derived from alignment at L-elsbetiae_contig14052:2316..3142+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCTACCCATTAAATTCGAGCCAGACATTGCCAGACACAGCAGTCTGGC
GCACTTGCCATGGGGTACCCATTACAAAGCGTGGCTAAGCAAGGAGAGCA
GCGGTCCCAAAAGTGAACATCGACAGAGTCCATCCCCACCACGCTTGCGA
TCTCGCTTCTACTAACTGCAAAGGCAAGTTTTTCGCGGGAGACGTATGTA
CTGCAGACACATCAGAGTAAGAGATGATGAGTTTCGCGAATGCTAGGTGG
GACACACGCTGCAGACCCAGCGAAGGTCGATTGATAAGATGTGTTCTTCG
CCGATGCCTGGTGCTCCTTTGTTATTTTCGGTGCAAACATTCGGTGATCG
TGTGTGTGCGTAGGATGGTCTCTTTTGGAAAGGGCGGTCGCGGAGCGTTG
TGGGTTGTGGGTTCGTTCTCACGTCACAGCATTTTTTGTTGTTGGCTTTT
TTGGCGAAGGATTTGACCACTCCATGGAGCGATCGTTTTAGTGTACAGGT
CGTGTGAGACACCACTCAGATTGGGCGCCAACGCCGGTTTCTTCGATGTG
TTGGTGCGAAAGGCAACTGGTTAAACAGGTTGTTCCCGCCCGCCGCACAT
GACGCTTTTTTGCTATTGCTCCGCAAACTGCCGCCCGGCAGGCTCCCTCC
ACAATGGCTCAGACCGATCGCGACGCACTGCTGGCCCTATATACCGCAAC
CGACGGACCTAATTGGAAGAACAAAACCAACTGGAACACAAATGCCGATC
TCTCCAAGTGGTACGGGGTCAAACTCAACGGCGAGGGCCGCGTGGCGGCG
CTGTTTCTGAACGGCAACAACCTCCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14052:2316..3142+

>mRNA_L-elsbetiae_contig14052.3025.1 ID=mRNA_L-elsbetiae_contig14052.3025.1|Name=mRNA_L-elsbetiae_contig14052.3025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig14052:2316..3142+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCAGACCGATCGCGACGCACTGCTGGCCCTATATACCGCAACCGA
CGGACCTAATTGGAAGAACAAAACCAACTGGAACACAAATGCCGATCTCT
CCAAGTGGTACGGGGTCAAACTCAACGGCGAGGGCCGCGTGGCGGCGCTG
TTTCTGAACGGCAACAACCTCCGAATGGCTCAGACCGATCGCGACGCACT
GCTGGCCCTATATACCGCAACCGACGGACCTAATTGGAAGAACAAAACCA
ACTGGAACACAAATGCCGATCTCTCCAAGTGGTACGGGGTCAAACTCAAC
GGCGAGGGCCGCGTGGCGGCGCTGTTTCTGAACGGCAACAACCTCCGA
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