mRNA_L-elsbetiae_contig1404.3017.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1404.3017.1
Unique NamemRNA_L-elsbetiae_contig1404.3017.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1404.3017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1404contigL-elsbetiae_contig1404:23990..25648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_002280.1
Exons3
Model size308
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1404.3017.1prot_L-elsbetiae_contig1404.3017.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1404 23990..25648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.417536-CDS-L-elsbetiae_contig1404:23989..240431622815555.417536-CDS-L-elsbetiae_contig1404:23989..24043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1404 23990..24043 -
1691682956.896569-CDS-L-elsbetiae_contig1404:23989..240431691682956.896569-CDS-L-elsbetiae_contig1404:23989..24043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1404 23990..24043 -
1622815555.4288013-CDS-L-elsbetiae_contig1404:25172..252621622815555.4288013-CDS-L-elsbetiae_contig1404:25172..25262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1404 25173..25262 -
1691682956.904881-CDS-L-elsbetiae_contig1404:25172..252621691682956.904881-CDS-L-elsbetiae_contig1404:25172..25262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1404 25173..25262 -
1622815555.438825-CDS-L-elsbetiae_contig1404:25486..256481622815555.438825-CDS-L-elsbetiae_contig1404:25486..25648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1404 25487..25648 -
1691682956.9125102-CDS-L-elsbetiae_contig1404:25486..256481691682956.9125102-CDS-L-elsbetiae_contig1404:25486..25648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1404 25487..25648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1404.3017.1

>prot_L-elsbetiae_contig1404.3017.1 ID=prot_L-elsbetiae_contig1404.3017.1|Name=mRNA_L-elsbetiae_contig1404.3017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MPFYQSRHIRPAAQTFAERGAFAAFLVLVASAVVHSVQAADATTDYLKPS
VSSKDCMHVVGQVSTKTENLGNDGACMQCDPANNVCPPGCQALVDELYTN
CD
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mRNA from alignment at L-elsbetiae_contig1404:23990..25648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1404.3017.1 ID=mRNA_L-elsbetiae_contig1404.3017.1|Name=mRNA_L-elsbetiae_contig1404.3017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1659bp|location=Sequence derived from alignment at L-elsbetiae_contig1404:23990..25648- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCTTTTACCAATCCAGACATATTCGCCCGGCAGCACAAACATTTGC
GGAAAGAGGGGCATTCGCGGCATTTCTGGTCCTCGTTGCTTCGGCCGTTG
TTCACTCCGTGCAAGCAGCGGATGCAACGACGGACTACCTCAAGCCGAGT
GTGAGCTCGAAGGTAAATACATTTTACTCTCTGACTCGCAGCAACAGTCA
AGGGGATAGCTGCTTGTGAACGAAAGGCAACGGCAGCTCAGTAAATATCG
CTGGATTGAGAGAACGTCAGATCTGGATTCGTGGCACTTGACCTATTTCG
CCGTCGCATTGATTGAAGCTATGTATAACTTATTTCGGCTCTTGTGTCTT
GTCTTTGTGGGTTCGAATACCCAAACCGGAACACAGGATTGCATGCACGT
GGTGGGACAAGTTTCGACAAAGACGGAGAACCTCGGCAACGATGGCGCTT
GCATGCAGTGTGATCCGGCCAACAATGTGAGCTGGCATCCAGTGGGGTTA
GTAGATGTCCACATTCTCTCGGTAGTAGGTAATAATGAACCGTTTGGCCC
TCTTTTTCACGGTAACGTGAGTGCATGGAATAAATGAATGTGTAATGCGG
TGGACATGTTGGTACACAGGGTATGCACAACTTCCAAAGAATCTGCTTTG
TCGAAAGCGCAGCCGCCGTTGATCCTCGGAAACACAACCAATGATCGTGG
GGGGGATCTGGTTTTGCCGGCATGGGTCAATGAAGGCATTTAAAAGACTT
ATGTTTGTGGACGCGGAGCGCGAGTTAGTCCGGACCTACATGGGAAGAAA
AACACTATTTTTTACTGTCAAACAGGGCCAACCTTAAATATGATCGTGTT
GCACCGGGAATTCTTCTCAGATGCGAATTTTCTCTTACTCTTCCCGCCAT
TGACTGTCTCCGTGGCCCTTTGGGATCCGTGTCAGTATTCCCTGCGCGGA
GTTTTGGGAGCCGGTATACGAGACCCCGGGGTCCCGTATAAAAAATGAGA
CCACTGGGATCTAGTTTCGCAAAATGCGCCACAAAGCCTTGCTTAGATTC
CAAAGTTTTCTTGCATGAAAGTTGGTTGTAGGGCCCAGGGCTAGCTCGGC
GAAAAGAGCTCACGAAAATTGACGCTCTCGTTGCAGAGATACGGACAATT
AATAAACGGAAGATGACTATTTATAAATTATAGCTTGGAAGCAGTATGTA
ATGGTCCCGGATGGTTTTCCGCAAATTTCATCACAAAACCTAGCTCAGAT
TCCGAAGTTTTCTGCATGAAAGTTATTCGTAGGGTCCAGCGCTAGCTCGC
CGAAAAGAGCTCACGGGAATTGATACCCTCGTTTTTTATACGGGACCCAG
GGGTCTCGTAACCGGCTGTCGCGGAGTTTATAAGGCACCGATAGGGTGCG
CGGAAAAATGCTGCTTCGGAAATATAACTGGGGAAAAATCCCCAACACTA
ACACCACCGATAAATAGCACCGCAGTATGTAGCTACGCATAAGGGTCCTA
GCATCGACCAACGCATCTCCTACCTCCTGCATTACCATAAACCTTCCCTA
TTGTGACCTTACATCATTGCGACGTTGCGTGTTGTCGCCTCTCTATTTGG
TATAGGTCTGTCCTCCTGGATGTCAAGCGCTCGTCGACGAGCTCTACACA
AACTGTGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1404:23990..25648-

>mRNA_L-elsbetiae_contig1404.3017.1 ID=mRNA_L-elsbetiae_contig1404.3017.1|Name=mRNA_L-elsbetiae_contig1404.3017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig1404:23990..25648- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCTTTTACCAATCCAGACATATTCGCCCGGCAGCACAAACATTTGC
GGAAAGAGGGGCATTCGCGGCATTTCTGGTCCTCGTTGCTTCGGCCGTTG
TTCACTCCGTGCAAGCAGCGGATGCAACGACGGACTACCTCAAGCCGAGT
GTGAGCTCGAAGATGCCCTTTTACCAATCCAGACATATTCGCCCGGCAGC
ACAAACATTTGCGGAAAGAGGGGCATTCGCGGCATTTCTGGTCCTCGTTG
CTTCGGCCGTTGTTCACTCCGTGCAAGCAGCGGATGCAACGACGGACTAC
CTCAAGCCGAGTGTGAGCTCGAAGGATTGCATGCACGTGGTGGGACAAGT
TTCGACAAAGACGGAGAACCTCGGCAACGATGGCGCTTGCATGCAGTGTG
ATCCGGCCAACAATGATTGCATGCACGTGGTGGGACAAGTTTCGACAAAG
ACGGAGAACCTCGGCAACGATGGCGCTTGCATGCAGTGTGATCCGGCCAA
CAATGTCTGTCCTCCTGGATGTCAAGCGCTCGTCGACGAGCTCTACACAA
ACTGTGACGTCTGTCCTCCTGGATGTCAAGCGCTCGTCGACGAGCTCTAC
ACAAACTGTGAC
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