mRNA_L-elsbetiae_contig14022.3005.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14022.3005.1
Unique NamemRNA_L-elsbetiae_contig14022.3005.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14022.3005.1 vs. uniprot
Match: A0A6H5JJV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 6.720e-19
Identity = 57/128 (44.53%), Postives = 75/128 (58.59%), Query Frame = 2 
Query:  272 MATMSAEYGTMTEEVRQNRAQRGLHVAVVSGFLNNSRPVQESCLGLCNACRDGVPAGCIRIQDGMPPTTLSMFWPNGSNGVDDCRA--TRVMPPRRVLKVRW-IRGDAVGATDA----YPMAGATSVG 634
            MA ++ E  +  E +R +RA RGL VAVVSGF+ + R VQESCLGLCNACR+GVP   + +++ +P   L+M  PN      +     TRV+ PRRVL++ W  R  A  A        P AG  SVG
Sbjct:    1 MAAVAMENWSSEEHMR-DRALRGLQVAVVSGFMKDCRSVQESCLGLCNACREGVPVERMLVREWVPQILLAMVLPNAVQAQREAEIPPTRVLHPRRVLRLEWTFRSHAWWAESTGQVPKPSAGTPSVG 127
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BLAST of mRNA_L-elsbetiae_contig14022.3005.1 vs. uniprot
Match: A0A6H5JNP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.240e-16
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 2 
Query:  308 EEVRQNRAQRGLHVAVVSGFLNNSRPVQESCLGLCNACRDGVPAGCIRIQDGMPPTTLSMFWPN--GSNGVDDCRATRVMPPRRVLKVRW 571
            EE  ++RA R L  AVVSGF+ + R  Q SCLGLCNACR+GVP   + I +G+P T L+M  P    +    D   TRV+ PRRVL+++W
Sbjct:   12 EEHMRDRALRALQFAVVSGFVKDYRATQASCLGLCNACREGVPVERMLIAEGVPQTRLAMVLPKVVQAQWEADIPPTRVLQPRRVLRLKW 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14022.3005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJV6_9PHAE6.720e-1944.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNP2_9PHAE2.240e-1648.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14022contigL-elsbetiae_contig14022:3273..4677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size635
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14022.3005.1prot_L-elsbetiae_contig14022.3005.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14022 3273..3635 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.1120174-CDS-L-elsbetiae_contig14022:3272..36351622815554.1120174-CDS-L-elsbetiae_contig14022:3272..3635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14022 3273..3635 -
1691682956.2796648-CDS-L-elsbetiae_contig14022:3272..36351691682956.2796648-CDS-L-elsbetiae_contig14022:3272..3635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14022 3273..3635 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.1253467-UTR-L-elsbetiae_contig14022:3635..36471622815554.1253467-UTR-L-elsbetiae_contig14022:3635..3647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14022 3636..3647 -
1691682956.289618-UTR-L-elsbetiae_contig14022:3635..36471691682956.289618-UTR-L-elsbetiae_contig14022:3635..3647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14022 3636..3647 -
1622815554.1430342-UTR-L-elsbetiae_contig14022:4418..46771622815554.1430342-UTR-L-elsbetiae_contig14022:4418..4677Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14022 4419..4677 -
1691682956.302351-UTR-L-elsbetiae_contig14022:4418..46771691682956.302351-UTR-L-elsbetiae_contig14022:4418..4677Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14022 4419..4677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14022.3005.1

>prot_L-elsbetiae_contig14022.3005.1 ID=prot_L-elsbetiae_contig14022.3005.1|Name=mRNA_L-elsbetiae_contig14022.3005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MATMSAEYGTMTEEVRQNRAQRGLHVAVVSGFLNNSRPVQESCLGLCNAC
RDGVPAGCIRIQDGMPPTTLSMFWPNGSNGVDDCRATRVMPPRRVLKVRW
IRGDAVGATDAYPMAGATSVG
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mRNA from alignment at L-elsbetiae_contig14022:3273..4677-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14022.3005.1 ID=mRNA_L-elsbetiae_contig14022.3005.1|Name=mRNA_L-elsbetiae_contig14022.3005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1405bp|location=Sequence derived from alignment at L-elsbetiae_contig14022:3273..4677- (Laminarionema elsbetiae ELsaHSoW15)
AACAGTCTACGACGGAAGCGCGTTAATCAAATCACGGGCACCGACAGCAC
TGGATAGATATGTACATATATCGCGAATGTCGGCTGGAAATGTCGCACAA
TAAAGGTCTCACTTCGCTCGCACGAATGAATACGGCTTCCTCCCCTTCGT
CTGGTTGCATAAATCGAGTCAGGCGGTTTGGCAAACTCGACCGGGCTCTG
CCTTCCCACGAGCGAAAGCAGGGGGCGGAAGAAACCGCGAACGGTCTTCA
TACTTGCAGGTACGATGGCACATACATACCTCCTCTAGATGACAGCCAAT
ACCATTATAGGAACTCTGCATTGCGGGCCTCTGGTAGGCTAACTTGATGC
CGAAATCAGAGCACTCTGTACGTATGTGTTTCGGGTTTCCGCGGTCTGTG
GTGCTACGAGCATCACCGGTGACTAGGTTAACATCCCGCGACAGATTCGT
AGAGTTTTCCGTTCTTGAGGGGATTTCGGACGGCCTTAATGGTATCCTCA
ACTGGTAGATAGAATAATTTTGCCCGCCTTTTGTTTCTCTCCACAATTGT
TCCAAATTTTATGATTGGGAGCAACGCGTATCCCCCCCAGACTACTGACT
GTGGGTCTTCACGTATCCGTATTCATGCGTTCATCGGAACGGTTTTTTAA
TGACAAGACAACAACAAGAATAATAGGGGGGAGAGTGGACGAATATATTT
CGAAACGTCTACGGTACTCTGTTTCTGCATCGCGCTCCCATACGGATATG
CAACGTTCCGGGGAGAGAGTTTCGGTGGAGGGGGCTGTCCTCTCGTTCGT
AGGCGCGGTGCGCTCCATTATTCAGCTAGTTACTGTGCTTTGCACGTGCA
GCACATCTAGGGCGAACGGGAAATCGTTCCTGCTTTATTGCAGACGAGCG
TTATTTAGTCTAGTCCGTCCGTGCTTTTTTTCGCCACTCAACGTTTGCTA
CCCCTCCCCGGCTACATATACCAAGCGTTCTGCCACCCTTATCCCCCATC
CTTTTCCTCCTTTTCTCCCCGGCTTTGCAGCCAGCAGATCGCATGGCCAC
GATGTCTGCGGAGTACGGAACCATGACCGAAGAAGTAAGGCAAAACCGGG
CCCAACGGGGGCTTCACGTGGCGGTGGTTTCTGGCTTTTTGAACAACAGC
CGACCCGTGCAAGAATCGTGCCTTGGTCTGTGCAACGCCTGTCGGGATGG
AGTTCCTGCTGGATGCATTCGCATCCAAGACGGGATGCCCCCGACAACGC
TTTCCATGTTCTGGCCGAATGGGTCAAATGGAGTAGACGATTGCCGGGCG
ACCAGAGTGATGCCCCCCCGCAGGGTTCTGAAGGTGCGGTGGATTAGGGG
GGACGCTGTCGGTGCCACAGATGCGTACCCTATGGCAGGTGCTACCAGCG
TGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14022:3273..4677-

>mRNA_L-elsbetiae_contig14022.3005.1 ID=mRNA_L-elsbetiae_contig14022.3005.1|Name=mRNA_L-elsbetiae_contig14022.3005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig14022:3273..4677- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCACGATGTCTGCGGAGTACGGAACCATGACCGAAGAAGTAAGGCA
AAACCGGGCCCAACGGGGGCTTCACGTGGCGGTGGTTTCTGGCTTTTTGA
ACAACAGCCGACCCGTGCAAGAATCGTGCCTTGGTCTGTGCAACGCCTGT
CGGGATGGAGTTCCTGCTGGATGCATTCGCATCCAAGACGGGATGCCCCC
GACAACGCTTTCCATGTTCTGGCCGAATGGGTCAAATGGAGTAGACGATT
GCCGGGCGACCAGAGTGATGCCCCCCCGCAGGGTTCTGAAGGTGCGGTGG
ATTAGGGGGGACGCTGTCGGTGCCACAGATGCGTACCCTATGGCAGGTGC
TACCAGCGTGGGCATGGCCACGATGTCTGCGGAGTACGGAACCATGACCG
AAGAAGTAAGGCAAAACCGGGCCCAACGGGGGCTTCACGTGGCGGTGGTT
TCTGGCTTTTTGAACAACAGCCGACCCGTGCAAGAATCGTGCCTTGGTCT
GTGCAACGCCTGTCGGGATGGAGTTCCTGCTGGATGCATTCGCATCCAAG
ACGGGATGCCCCCGACAACGCTTTCCATGTTCTGGCCGAATGGGTCAAAT
GGAGTAGACGATTGCCGGGCGACCAGAGTGATGCCCCCCCGCAGGGTTCT
GAAGGTGCGGTGGATTAGGGGGGACGCTGTCGGTGCCACAGATGCGTACC
CTATGGCAGGTGCTACCAGCGTGGGC
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