mRNA_L-elsbetiae_contig14018.3004.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14018.3004.1
Unique NamemRNA_L-elsbetiae_contig14018.3004.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14018.3004.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.300e-20
Identity = 61/139 (43.88%), Postives = 75/139 (53.96%), Query Frame = 1 
Query:   28 GNWGVFGKGIILRVVGEPKSGTTILALAVASLAARLCGNSSNQWCRLTRFS-----QDFTHNFDMVH--AGTGTLFMRKQGVPGYDDKHSIPGIDSVPQI-CARGGRGHKASFFDTDPPCDFEGPPTRERLLACLPDTS 420
            G W + G GI +   GEPKSGTT L   V  LA  LCGN++N WC +   +         + F+MV+  AG G LF+   G    + KH IPG+   P   C  GGR H+  F DT P  D E  PTRERL ACL +TS
Sbjct:  152 GGWQLPGNGISMDATGEPKSGTTWLGRLVPDLALHLCGNANNSWCGMGGLAVLDNLPAPKYVFEMVNKTAGEGALFLHFDG----NGKHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEETPTRERLRACLFNTS 286
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BLAST of mRNA_L-elsbetiae_contig14018.3004.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.540e-20
Identity = 61/139 (43.88%), Postives = 74/139 (53.24%), Query Frame = 1 
Query:   28 GNWGVFGKGIILRVVGEPKSGTTILALAVASLAARLCGNSSNQWCRLTRFS-----QDFTHNFDMVH--AGTGTLFMRKQGVPGYDDKHSIPGIDSVPQI-CARGGRGHKASFFDTDPPCDFEGPPTRERLLACLPDTS 420
            G W + G GI +   GEPKSGTT L   V  LA  LCGN++N WC +             + F+MV+  AG G LF+   G    + KH IPG+   P   C  GGR H+  F DT P  D E  PTRERL ACL +TS
Sbjct:   86 GGWQLPGNGISMDATGEPKSGTTWLGRLVPDLALHLCGNANNSWCGMGGLVVLDNIPAPKYVFEMVNKTAGEGALFLHFDG----NGKHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEDTPTRERLRACLFNTS 220
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14018.3004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6E2_9PHAE1.300e-2043.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXT7_ECTSI1.540e-2043.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14018contigL-elsbetiae_contig14018:853..2205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size424
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14018.3004.1prot_L-elsbetiae_contig14018.3004.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14018 853..2205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.036797-CDS-L-elsbetiae_contig14018:852..10291622815554.036797-CDS-L-elsbetiae_contig14018:852..1029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14018 853..1029 -
1691682956.236521-CDS-L-elsbetiae_contig14018:852..10291691682956.236521-CDS-L-elsbetiae_contig14018:852..1029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14018 853..1029 -
1622815554.0488772-CDS-L-elsbetiae_contig14018:1419..15071622815554.0488772-CDS-L-elsbetiae_contig14018:1419..1507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14018 1420..1507 -
1691682956.2462113-CDS-L-elsbetiae_contig14018:1419..15071691682956.2462113-CDS-L-elsbetiae_contig14018:1419..1507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14018 1420..1507 -
1622815554.0640123-CDS-L-elsbetiae_contig14018:1715..18451622815554.0640123-CDS-L-elsbetiae_contig14018:1715..1845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14018 1716..1845 -
1691682956.254641-CDS-L-elsbetiae_contig14018:1715..18451691682956.254641-CDS-L-elsbetiae_contig14018:1715..1845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14018 1716..1845 -
1622815554.0779655-CDS-L-elsbetiae_contig14018:2177..22051622815554.0779655-CDS-L-elsbetiae_contig14018:2177..2205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14018 2178..2205 -
1691682956.270664-CDS-L-elsbetiae_contig14018:2177..22051691682956.270664-CDS-L-elsbetiae_contig14018:2177..2205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14018 2178..2205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14018.3004.1

>prot_L-elsbetiae_contig14018.3004.1 ID=prot_L-elsbetiae_contig14018.3004.1|Name=mRNA_L-elsbetiae_contig14018.3004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MVSRSNGMCGNWGVFGKGIILRVVGEPKSGTTILALAVASLAARLCGNSS
NQWCRLTRFSQDFTHNFDMVHAGTGTLFMRKQGVPGYDDKHSIPGIDSVP
QICARGGRGHKASFFDTDPPCDFEGPPTRERLLACLPDTSE
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mRNA from alignment at L-elsbetiae_contig14018:853..2205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14018.3004.1 ID=mRNA_L-elsbetiae_contig14018.3004.1|Name=mRNA_L-elsbetiae_contig14018.3004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1353bp|location=Sequence derived from alignment at L-elsbetiae_contig14018:853..2205- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTTCACGAAGCAATGGCATGTGCGGTGAGATTTACTCGCGTGCGGG
CTACACATGGCACGATATAACATTTCCCACTAAACGCCAACCGTCTATGA
CCAACCTGTCCAAAATATCGTTCCATGGGGGCTGTAGTAGACACACTTAC
CCTCCCTCAACGATCCCCGGCTACAATAGCCACAGAAGCAACACTCCGTA
CATACATACAGTAGCTATTGTTTGTTAAAAAAGGTTTAGTTATTTATTCT
CCCGATGTTTCTGATGGGGGCAAATGTCTTTTATTGAGCCAGTGCATGAA
TCCCATCAATCTACTGTCGTATCACAATTATCCCGACGTTACGATGTTTG
CGATGAACAGGCAATTGGGGCGTGTTCGGCAAAGGCATTATCCTCAGAGT
AGTTGGGGAGCCTAAATCTGGGACCACTATTTTGGCTCTAGCCGTAGCAT
CACTTGCTGCACGTCTGTGCGGGAATTCTTCGAACCAATGGTGAGCCTCG
AGCTCGTGCCCCTTTGTCGTGCCAGAAGAATTAACTAAATGAGGGTTTTG
GCTGCGCAGTGCCGCAACTTGCTCCAACACTGAAACCGTCCGCTCGAGAG
AATGTCCCGCTTGTTTTTGATGCAGCTCAACGGTTTTGCCGCACCCGAAA
CACCAAAAATATGCCCCTTTCCTGCTGGCATCATTCTCACCTTGATAGGT
GCCGCTTGACTAGGTTTTCCCAAGATTTCACGCACAACTTCGACATGGTG
CATGCGGGAACGGGAACACTATTTATGCGTAAACAGGTGACCAGCAAAAA
GAGGCAGCTCCTACATACCGCTTCCTAAAAACCTAGCGCTGTCGCCGCCG
TTATTTGTTATTTAGCTACGGGAATGGTACATTATGGTGTTCCAGAATCT
ACTCTAAATAGCACATGTCCAGTTTCCCAAGACTCAACAGTGCTAAGGAT
GCAATGTGTCGTAATAATTCCTCCGACTCGCTTCTAGACCCAAGGCAAAA
TGCCAGTCATGTCTGTACTAGAAGTTGTGCCATCCCAACGTGGACACGTG
CTCACCGAAAGGAGTAGTAATGTACGAGCAACCTCGAGAGCTGCTGGCTT
TCAGAAGATCGCCTCGAAATTTTCGTTTGCCCATGACCGTCCGTCCCTGC
GTGCGCCCTGCTGTATCTAAAAAAAGGGGGTGCCGGGGTATGATGACAAG
CACTCCATTCCTGGGATAGACAGCGTTCCACAAATTTGTGCCCGTGGTGG
TCGGGGACACAAAGCAAGCTTCTTCGACACTGACCCCCCCTGCGATTTTG
AGGGACCTCCAACACGAGAACGACTACTGGCGTGCCTCCCAGACACATCG
GAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14018:853..2205-

>mRNA_L-elsbetiae_contig14018.3004.1 ID=mRNA_L-elsbetiae_contig14018.3004.1|Name=mRNA_L-elsbetiae_contig14018.3004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig14018:853..2205- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTTCACGAAGCAATGGCATGTGCGATGGTTTCACGAAGCAATGGCA
TGTGCGGCAATTGGGGCGTGTTCGGCAAAGGCATTATCCTCAGAGTAGTT
GGGGAGCCTAAATCTGGGACCACTATTTTGGCTCTAGCCGTAGCATCACT
TGCTGCACGTCTGTGCGGGAATTCTTCGAACCAATGGCAATTGGGGCGTG
TTCGGCAAAGGCATTATCCTCAGAGTAGTTGGGGAGCCTAAATCTGGGAC
CACTATTTTGGCTCTAGCCGTAGCATCACTTGCTGCACGTCTGTGCGGGA
ATTCTTCGAACCAATGGTGCCGCTTGACTAGGTTTTCCCAAGATTTCACG
CACAACTTCGACATGGTGCATGCGGGAACGGGAACACTATTTATGCGTAA
ACAGGTGCCGCTTGACTAGGTTTTCCCAAGATTTCACGCACAACTTCGAC
ATGGTGCATGCGGGAACGGGAACACTATTTATGCGTAAACAGGGGGTGCC
GGGGTATGATGACAAGCACTCCATTCCTGGGATAGACAGCGTTCCACAAA
TTTGTGCCCGTGGTGGTCGGGGACACAAAGCAAGCTTCTTCGACACTGAC
CCCCCCTGCGATTTTGAGGGACCTCCAACACGAGAACGACTACTGGCGTG
CCTCCCAGACACATCGGAAGGGGTGCCGGGGTATGATGACAAGCACTCCA
TTCCTGGGATAGACAGCGTTCCACAAATTTGTGCCCGTGGTGGTCGGGGA
CACAAAGCAAGCTTCTTCGACACTGACCCCCCCTGCGATTTTGAGGGACC
TCCAACACGAGAACGACTACTGGCGTGCCTCCCAGACACATCGGAA
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