mRNA_L-elsbetiae_contig1401.3002.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1401.3002.1
Unique NamemRNA_L-elsbetiae_contig1401.3002.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1401.3002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1401contigL-elsbetiae_contig1401:20045..20906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size862
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1401.3002.1prot_L-elsbetiae_contig1401.3002.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1401 20181..20636 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.6755893-UTR-L-elsbetiae_contig1401:20044..201801622815553.6755893-UTR-L-elsbetiae_contig1401:20044..20180Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1401 20045..20180 +
1691682955.9568555-UTR-L-elsbetiae_contig1401:20044..201801691682955.9568555-UTR-L-elsbetiae_contig1401:20044..20180Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1401 20045..20180 +
1622815553.6983957-UTR-L-elsbetiae_contig1401:20636..209061622815553.6983957-UTR-L-elsbetiae_contig1401:20636..20906Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1401 20637..20906 +
1691682955.9843159-UTR-L-elsbetiae_contig1401:20636..209061691682955.9843159-UTR-L-elsbetiae_contig1401:20636..20906Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1401 20637..20906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.6883295-CDS-L-elsbetiae_contig1401:20180..206361622815553.6883295-CDS-L-elsbetiae_contig1401:20180..20636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1401 20181..20636 +
1691682955.9705186-CDS-L-elsbetiae_contig1401:20180..206361691682955.9705186-CDS-L-elsbetiae_contig1401:20180..20636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1401 20181..20636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1401.3002.1

>prot_L-elsbetiae_contig1401.3002.1 ID=prot_L-elsbetiae_contig1401.3002.1|Name=mRNA_L-elsbetiae_contig1401.3002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
MQSASSPPAPRSPPPRPPSAAIARQALTLTLTSGVLCSSDHFFVGSGSKR
HTHPRLSSAACRVLAGTRRSVSPSPASVSLSGPAAVAASLSGSRSDSTRR
VSPRRRATEIIPEVAFGPRTAAVAAGLVLMPLQMPPAADTGTLLRTAKSS
A*
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mRNA from alignment at L-elsbetiae_contig1401:20045..20906+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1401.3002.1 ID=mRNA_L-elsbetiae_contig1401.3002.1|Name=mRNA_L-elsbetiae_contig1401.3002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=862bp|location=Sequence derived from alignment at L-elsbetiae_contig1401:20045..20906+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGGTGTCATTCCTGGTGGCTCCGTCGCTGCTACTGTGGGGGGCGTCCG
TGCTGTCAGCCCCGCGCAGAGCAGATGCAACACCAGGCGGCGCCGTCGCT
TCGGCGGGAAGCGCGCTGGTGAACAGGACCCCCACCATGCAATCTGCCTC
ATCTCCGCCCGCCCCACGCTCTCCTCCACCGCGGCCACCGTCGGCGGCGA
TCGCCCGGCAGGCCTTGACCTTGACCTTGACAAGCGGGGTCTTGTGTTCG
TCGGACCACTTCTTCGTTGGCAGCGGCAGCAAGCGGCACACGCACCCCAG
GCTCTCGAGCGCCGCTTGCAGGGTCTTGGCGGGGACGAGGCGGTCGGTGT
CGCCGTCGCCAGCGTCTGTTTCTCTGTCGGGCCCGGCGGCCGTAGCTGCT
TCGTTGTCGGGGAGCCGCAGCGACAGCACAAGGCGCGTTTCTCCCAGGCG
CCGAGCAACTGAAATCATTCCTGAGGTAGCCTTCGGCCCGCGAACAGCGG
CGGTGGCGGCGGGCCTAGTATTGATGCCGCTGCAGATGCCGCCAGCGGCG
GACACGGGGACACTGCTGCGAACGGCGAAGTCGTCCGCGTAGCTTTTTAA
GCCCGCCCGCCTCCTCGCTCTCTCTCCGTCTCCCCTCTCCTCCTCGCATT
CGCTCGGCGACGGACAGTCATGAAAAGGGCTGTCGCCTTCCCTCCGGAAG
CTGGTGGGGGTGCCGCTGGTGCTGCTGGTGCTGCTCACGCACTGCCCTCC
GGAAGAAGTGCTCTCGGAGGTACCCGAGCCTTGTTTGATGTCACTGGGCG
AGTTTCGTTGTTGCTCGCACCAATCCTTCTCCTTTTGCCCATCGGTGGGC
CCGAGCTCAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1401:20045..20906+

>mRNA_L-elsbetiae_contig1401.3002.1 ID=mRNA_L-elsbetiae_contig1401.3002.1|Name=mRNA_L-elsbetiae_contig1401.3002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig1401:20045..20906+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAATCTGCCTCATCTCCGCCCGCCCCACGCTCTCCTCCACCGCGGCC
ACCGTCGGCGGCGATCGCCCGGCAGGCCTTGACCTTGACCTTGACAAGCG
GGGTCTTGTGTTCGTCGGACCACTTCTTCGTTGGCAGCGGCAGCAAGCGG
CACACGCACCCCAGGCTCTCGAGCGCCGCTTGCAGGGTCTTGGCGGGGAC
GAGGCGGTCGGTGTCGCCGTCGCCAGCGTCTGTTTCTCTGTCGGGCCCGG
CGGCCGTAGCTGCTTCGTTGTCGGGGAGCCGCAGCGACAGCACAAGGCGC
GTTTCTCCCAGGCGCCGAGCAACTGAAATCATTCCTGAGGTAGCCTTCGG
CCCGCGAACAGCGGCGGTGGCGGCGGGCCTAGTATTGATGCCGCTGCAGA
TGCCGCCAGCGGCGGACACGGGGACACTGCTGCGAACGGCGAAGTCGTCC
GCGTAGATGCAATCTGCCTCATCTCCGCCCGCCCCACGCTCTCCTCCACC
GCGGCCACCGTCGGCGGCGATCGCCCGGCAGGCCTTGACCTTGACCTTGA
CAAGCGGGGTCTTGTGTTCGTCGGACCACTTCTTCGTTGGCAGCGGCAGC
AAGCGGCACACGCACCCCAGGCTCTCGAGCGCCGCTTGCAGGGTCTTGGC
GGGGACGAGGCGGTCGGTGTCGCCGTCGCCAGCGTCTGTTTCTCTGTCGG
GCCCGGCGGCCGTAGCTGCTTCGTTGTCGGGGAGCCGCAGCGACAGCACA
AGGCGCGTTTCTCCCAGGCGCCGAGCAACTGAAATCATTCCTGAGGTAGC
CTTCGGCCCGCGAACAGCGGCGGTGGCGGCGGGCCTAGTATTGATGCCGC
TGCAGATGCCGCCAGCGGCGGACACGGGGACACTGCTGCGAACGGCGAAG
TCGTCCGCGTAG
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