mRNA_L-elsbetiae_contig1400.2996.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1400.2996.1
Unique NamemRNA_L-elsbetiae_contig1400.2996.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1400.2996.1 vs. uniprot
Match: D8LIZ8_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ8_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 1.590e-68
Identity = 107/114 (93.86%), Postives = 113/114 (99.12%), Query Frame = 1
Query:   28 QVETAARPYAFIKFDKVIQRKRKEYLDPQSRNNMARLNDDLADIHNIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMALWQKYGPIGAMALAVVFILWWKFF 369
            +VETAARPYAFIKFDKVIQRKRKE+LDPQSRNNMARLNDDLADIH+IMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMALWQKYGPIGAM +A++FILWWKFF
Sbjct:  110 KVETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMALWQKYGPIGAMVIAILFILWWKFF 223          
BLAST of mRNA_L-elsbetiae_contig1400.2996.1 vs. uniprot
Match: A0A835Z3W0_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W0_9STRA)

HSP 1 Score: 177 bits (449), Expect = 6.000e-54
Identity = 88/113 (77.88%), Postives = 102/113 (90.27%), Query Frame = 1
Query:   28 QVETAARPYAFIKFDKVIQRKRKEYLDPQSRNNMARLNDDLADIHNIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMALWQKYGPIGAMALAVVFILWWKF 366
            QVET +RPY FIKFDKVIQRKR+EYLDP SR+NMARLN DLADIH+IMK+NI+EVLNRGE+LDHVS+ISK L+TQAEQFKW+SKKLSLMALWQKY P+ A+ L V+  LW+KF
Sbjct:  110 QVETVSRPYGFIKFDKVIQRKRREYLDPSSRDNMARLNSDLADIHDIMKKNIQEVLNRGERLDHVSQISKDLATQAEQFKWNSKKLSLMALWQKYAPMVAILLVVLITLWYKF 222          
BLAST of mRNA_L-elsbetiae_contig1400.2996.1 vs. uniprot
Match: A0A6G0WBK5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBK5_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.040e-44
Identity = 73/113 (64.60%), Postives = 95/113 (84.07%), Query Frame = 1
Query:   31 VETAARPYAFIKFDKVIQRKRKEYLDPQSRNNMARLNDDLADIHNIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMALWQKYGPIGAMALAVVFILWWKFF 369
            V T ARPYAFIKFDKVIQ+KRKEY DP S  N+++LN DLADIHN+M+QNI+EVLNRGE +D VS+IS  ++ ++++FKW+SKKLSL AL+QKY P+ A+ L VV +++WKFF
Sbjct:  111 VTTVARPYAFIKFDKVIQKKRKEYTDPSSSQNVSKLNSDLADIHNVMRQNIQEVLNRGEAIDRVSQISSNIADRSKEFKWASKKLSLQALYQKYAPLAAVGLFVVLVIYWKFF 223          
BLAST of mRNA_L-elsbetiae_contig1400.2996.1 vs. uniprot
Match: A0A485KKL0_9STRA (Aste57867_8523 protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485KKL0_9STRA)

HSP 1 Score: 149 bits (375), Expect = 9.630e-43
Identity = 71/113 (62.83%), Postives = 95/113 (84.07%), Query Frame = 1
Query:   31 VETAARPYAFIKFDKVIQRKRKEYLDPQSRNNMARLNDDLADIHNIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMALWQKYGPIGAMALAVVFILWWKFF 369
            V T ARPYAFIKFDK IQ+KRKEY DP S  NM++LN+DLADIHN+M+QNI+EVLNRGE +D VS+IS  ++ ++++FKW +KKLSL A++QKYGP+ A+ L VV ++++KFF
Sbjct:  111 VTTVARPYAFIKFDKFIQKKRKEYTDPSSSQNMSKLNNDLADIHNVMRQNIQEVLNRGEAIDRVSQISSNIADRSKEFKWGAKKLSLQAMYQKYGPLVAIGLFVVLVIYFKFF 223          
BLAST of mRNA_L-elsbetiae_contig1400.2996.1 vs. uniprot
Match: A0A067CJ44_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CJ44_SAPPC)

HSP 1 Score: 146 bits (368), Expect = 1.100e-41
Identity = 70/113 (61.95%), Postives = 94/113 (83.19%), Query Frame = 1
Query:   31 VETAARPYAFIKFDKVIQRKRKEYLDPQSRNNMARLNDDLADIHNIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMALWQKYGPIGAMALAVVFILWWKFF 369
            V T ARPYAFIKFDK IQRKRKEY DP S  NM+++N+DLADIHN+M++NI+EVLNRGE +D VS++S  L+ +++ FKW +KKLSL A++QKYGP+ A+ L +V +L++KFF
Sbjct:  111 VTTIARPYAFIKFDKFIQRKRKEYTDPSSSQNMSKVNNDLADIHNVMRKNIQEVLNRGEAIDRVSQMSSNLADRSKDFKWGAKKLSLQAMYQKYGPLVAIGLFIVLVLYFKFF 223          
BLAST of mRNA_L-elsbetiae_contig1400.2996.1 vs. uniprot
Match: A0A662XIN1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XIN1_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.280e-41
Identity = 71/113 (62.83%), Postives = 93/113 (82.30%), Query Frame = 1
Query:   31 VETAARPYAFIKFDKVIQRKRKEYLDPQSRNNMARLNDDLADIHNIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMALWQKYGPIGAMALAVVFILWWKFF 369
            V T ARPYAFIKFDK IQ+KRKEY DP S  NM RLNDDLADIHNIM++NI+EVLNRGE+++HVS IS  L+ +++  KW +KKL + A++++YGPI A+AL V+F+++ KFF
Sbjct:  104 VTTVARPYAFIKFDKFIQKKRKEYADPNSSQNMHRLNDDLADIHNIMRKNIQEVLNRGERVEHVSRISSNLADRSKDLKWGAKKLRMQAIYRQYGPIVAVALFVIFVIYIKFF 216          
BLAST of mRNA_L-elsbetiae_contig1400.2996.1 vs. uniprot
Match: F0VZT0_9STRA (Vesicletrafficking protein SEC22b putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZT0_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.260e-40
Identity = 69/113 (61.06%), Postives = 92/113 (81.42%), Query Frame = 1
Query:   31 VETAARPYAFIKFDKVIQRKRKEYLDPQSRNNMARLNDDLADIHNIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMALWQKYGPIGAMALAVVFILWWKFF 369
            V TAARPYAFIKFDK IQRKRKEY DP S  NM+RLN+DLADIHNIM+QNI+EVLNRGE+++HVS IS  L+ +++  KW +KKL + A++++YGPI A+   ++ +++ KFF
Sbjct:  111 VTTAARPYAFIKFDKFIQRKRKEYTDPSSSQNMSRLNNDLADIHNIMRQNIQEVLNRGERVEHVSRISSNLADRSKDLKWGAKKLRMQAIYRQYGPIAAVGAFILLVIYIKFF 223          
BLAST of mRNA_L-elsbetiae_contig1400.2996.1 vs. uniprot
Match: H3GVF5_PHYRM (Uncharacterized protein n=20 Tax=Peronosporaceae TaxID=4777 RepID=H3GVF5_PHYRM)

HSP 1 Score: 143 bits (361), Expect = 1.360e-40
Identity = 71/113 (62.83%), Postives = 92/113 (81.42%), Query Frame = 1
Query:   31 VETAARPYAFIKFDKVIQRKRKEYLDPQSRNNMARLNDDLADIHNIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMALWQKYGPIGAMALAVVFILWWKFF 369
            V T ARPYAFIKFDK IQ+KRKEY DP S  NM RLNDDLADIHNIM++NI+EVLNRGE+++HVS IS  L+ +++  KW +KKL L A++++YGPI A+AL V+ +++ KFF
Sbjct:  114 VTTVARPYAFIKFDKFIQKKRKEYADPNSSQNMHRLNDDLADIHNIMRKNIQEVLNRGERVEHVSRISSNLADRSKDLKWGAKKLRLQAIYRQYGPIVAVALFVLLVIYIKFF 226          
BLAST of mRNA_L-elsbetiae_contig1400.2996.1 vs. uniprot
Match: A0A6V1P6Q6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6Q6_HETAK)

HSP 1 Score: 143 bits (361), Expect = 1.440e-40
Identity = 69/114 (60.53%), Postives = 97/114 (85.09%), Query Frame = 1
Query:   28 QVETAARPYAFIKFDKVIQRKRKEYLDPQSRNNMARLNDDLADIHNIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMALWQKYGPIGAMALAVVFILWWKFF 369
            +V+T +RPY FIKFDKVIQ KRK+Y DP+SR  + RLN+DLADIH +M++NI+EVL+RGE++DHV+++S+ L   +++FKW +KKL+LMAL+QKYGPIGA+AL  + I++ KFF
Sbjct:  114 KVDTVSRPYYFIKFDKVIQLKRKDYADPESRGALRRLNNDLADIHTVMRKNIQEVLDRGERIDHVADVSRKLVDDSKKFKWGTKKLTLMALYQKYGPIGAVALLGLTIIYVKFF 227          
BLAST of mRNA_L-elsbetiae_contig1400.2996.1 vs. uniprot
Match: A0A3F2RPY3_9STRA (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RPY3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.520e-40
Identity = 70/113 (61.95%), Postives = 92/113 (81.42%), Query Frame = 1
Query:   31 VETAARPYAFIKFDKVIQRKRKEYLDPQSRNNMARLNDDLADIHNIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMALWQKYGPIGAMALAVVFILWWKFF 369
            V T ARPYAFIKFDK IQ+KRKEY DP S  NM RLNDDLADIHNIM++NI+EVLNRGE+++HVS IS  L+ +++  KW +KKL + A++++YGPI A+AL V+ +++ KFF
Sbjct:  111 VTTVARPYAFIKFDKFIQKKRKEYADPNSSQNMHRLNDDLADIHNIMRKNIQEVLNRGERVEHVSRISSNLADRSKDLKWGAKKLRMQAIYRQYGPIVAVALFVLLVIYIKFF 223          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1400.2996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIZ8_ECTSI1.590e-6893.86Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A835Z3W0_9STRA6.000e-5477.88Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A6G0WBK5_9STRA1.040e-4464.60Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KKL0_9STRA9.630e-4362.83Aste57867_8523 protein n=5 Tax=Aphanomyces TaxID=1... [more]
A0A067CJ44_SAPPC1.100e-4161.95Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A662XIN1_9STRA1.280e-4162.83Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
F0VZT0_9STRA1.260e-4061.06Vesicletrafficking protein SEC22b putative n=1 Tax... [more]
H3GVF5_PHYRM1.360e-4062.83Uncharacterized protein n=20 Tax=Peronosporaceae T... [more]
A0A6V1P6Q6_HETAK1.440e-4060.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3F2RPY3_9STRA2.520e-4061.95Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1400contigL-elsbetiae_contig1400:1813..4703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue7.2e-54
Seed eggNOG ortholog2880.D8LIZ8
Preferred nameSEC22B
KEGG koko:K08517
KEGG Pathwayko04130,ko04145,ko05134,map04130,map04145,map05134
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000149,GO:0002376,GO:0002474,GO:0002478,GO:0002479,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006996,GO:0007154,GO:0007267,GO:0008104,GO:0008150,GO:0009306,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009987,GO:0010506,GO:0010507,GO:0010604,GO:0010639,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016241,GO:0016242,GO:0019222,GO:0019882,GO:0019884,GO:0019905,GO:0022607,GO:0023052,GO:0023061,GO:0030133,GO:0030134,GO:0030135,GO:0030139,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030666,GO:0030670,GO:0031090,GO:0031201,GO:0031224,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0034613,GO:0042175,GO:0042176,GO:0042590,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045335,GO:0045732,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048279,GO:0048280,GO:0048284,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060255,GO:0061024,GO:0061025,GO:0061355,GO:0065003,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0198738,GO:1902115,GO:1902116,GO:1902902,GO:1990668,GO:2000785
EggNOG free text desc.vesicle fusion with Golgi apparatus
EggNOG OGsCOG5143@1,KOG0862@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-20_002140.1
Exons4
Model size372
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1400.2996.1prot_L-elsbetiae_contig1400.2996.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1400 1813..4703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.116057-CDS-L-elsbetiae_contig1400:1812..18871622815553.116057-CDS-L-elsbetiae_contig1400:1812..1887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 1813..1887 +
1691682955.6082692-CDS-L-elsbetiae_contig1400:1812..18871691682955.6082692-CDS-L-elsbetiae_contig1400:1812..1887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 1813..1887 +
1622815553.1325014-CDS-L-elsbetiae_contig1400:2350..24921622815553.1325014-CDS-L-elsbetiae_contig1400:2350..2492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 2351..2492 +
1691682955.6195946-CDS-L-elsbetiae_contig1400:2350..24921691682955.6195946-CDS-L-elsbetiae_contig1400:2350..2492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 2351..2492 +
1622815553.1458137-CDS-L-elsbetiae_contig1400:3635..37121622815553.1458137-CDS-L-elsbetiae_contig1400:3635..3712Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 3636..3712 +
1691682955.6279914-CDS-L-elsbetiae_contig1400:3635..37121691682955.6279914-CDS-L-elsbetiae_contig1400:3635..3712Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 3636..3712 +
1622815553.1590507-CDS-L-elsbetiae_contig1400:4625..47031622815553.1590507-CDS-L-elsbetiae_contig1400:4625..4703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 4626..4703 +
1691682955.6362147-CDS-L-elsbetiae_contig1400:4625..47031691682955.6362147-CDS-L-elsbetiae_contig1400:4625..4703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 4626..4703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1400.2996.1

>prot_L-elsbetiae_contig1400.2996.1 ID=prot_L-elsbetiae_contig1400.2996.1|Name=mRNA_L-elsbetiae_contig1400.2996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MKNKNTIFPQVETAARPYAFIKFDKVIQRKRKEYLDPQSRNNMARLNDDL
ADIHNIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMAL
WQKYGPIGAMALAVVFILWWKFF*
back to top

mRNA from alignment at L-elsbetiae_contig1400:1813..4703+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1400.2996.1 ID=mRNA_L-elsbetiae_contig1400.2996.1|Name=mRNA_L-elsbetiae_contig1400.2996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2891bp|location=Sequence derived from alignment at L-elsbetiae_contig1400:1813..4703+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAACAAAAACACGATATTTCCGCAGGTGGAGACGGCGGCACGACC ATACGCCTTCATCAAATTCGACAAGGTGGGTGGGGCAGGTCCTCTATTTG CGTCCTGTTACATGTGTCACACCCCATGTGTCGGCAGTTGAGGTCGTACT GTTGTACCGTGTCGTGAGTGTTTGTGGCGTGTATGTCCGTGTGGTGTGCA TGGACGATGTGCATTCATGCGTCTTCATCCATGTGTCAAGCCAGCCTCCA AGCTGCGACGCCGACCGTTTTTGTTTTTTTTTCAAGCCGATGCGGTAGAA TCTCGAGCAAGGTTTGAGGCACCCACTCTCTTTACATCGCTACCACTGCT GCTGCTACTGCTGTTCGTGTTGCTGTAGGTGATTCAGCGTAAGCGGAAAG ACTACCTTGATCCTCGACGTTTTTTTGAATATTTTTCAAGCGGATGCGGT AAGATCTCGAGCAAGATTTGAGGCACTCACTCTCTTTCCATCCCTACCGC TGCTGCTGCTGCTGCTGCTGCTGCTCGTGTTGCTGTAGGTGATTCAGCGT AAGCGGAAAGAGTACCTTGATCCTCAGAGCCGGAACAACATGGCACGGCT CAATGACGACCTTGCCGACATCCACAACATCATGAAGCAGAACATCGAGG AGGTCCTCAACCGAGGGGAGAAGCTAGACCGTGAGTGCCATCGAGCTGGT GCCGGTGCTGTTAGCTGTTTCCTGTTGCTGTTGTTGCTGCTGCTGCTGCT GCTGCTGCTGTCGCTCCCTGCCGAGGTGCCTCCCCGTTGCGCGCGCTTTG CAGCTGTTGTTGGCGGGGTTGATTTTGATTTTGATTTCGCATGGCCAAGC CTCAGGTGTTTCAAAGCTCCGTACTCTACATACACAGGTACGTTATAAAT TATAGGGCGTATTTGGTGTCAGACACGAAAAAGGAAAAAGTACGAGTTCG CGAATCGCGAAGACAAAAGGTTGATTTGAGCCGTGCAGGTTGCTCAATAG CGTACAGAAAGGGGCACACGCCAACTACAGGAAGGGAGCTAGACCAGAGG GAATGAATGCCCAGGGGTCCCGCCCGCGGCTGTTGTGGTGATGGTGTTTG GTACGCACGCACCCACAGATCCATCCGCCACCACGCAGGGCCCTTGCGTC CGAAATTCCCGACTTATGTAGCGCACCGCCCAGGGAGGGGAGCGGTCCCT AAGCCTTTTTTATTTTTTATGCTCACCCTTCTTTCAAATTGCTTTACTAC TACTGTGTGTTGGCATCCAAGAAGGTGCTCGCAAGGTCGTGCGCGCCTCT CGCCTGTTGTTTTCTAGAGCCGAGAGAAGAAGACGAAAATAACGCGTGCG ACAGACAGAGAAAGTCAAAGGCAGCAGCAGCAGCAGCAGCAGCAGCTGGA TTTTGTTTTCTATGTAGATATGTATCTTTTGAAAAGAAACGCGAGGAAAT CGAAAACCTTTTTTTCTCTGGCCGCGAGACACTGACTGGTCTGGTCTGTC TGCGGGCCGGGGTTGTTTTTCGTCGTCATAAAATCGTTGTTACTTTTTTT GTTTTTGTTGGCTTATTCGTCGTCTGCCCCACTGGCCCCCATCCTCCACT ACGACTAGCTGGACGACCCAACCGGGATCACACAGTATATTGTATTCACA TCTCTTACTTTTACTGCGGGCGGGGGAGTTCAATCTGTCGCCTTGTGGTC GCCCTCCTCTTGGCTAAGGCGCTGCTGCTCGTCTCCGAAAATGCCTCTCC ACGCCGCGCGCGCGCGCGCGCGCGCGTGTTTGTTGGTTGTGTGTGTTTGT GTGTCTGTGCGTGTGTTTGGCAGACGTTTCGGAGATCTCGAAGACGCTGT CAACGCAGGCGGAGCAGTTCAAGTGGAGCTCGAAAAAGCTGTCACTGATG GTGAGTAAGTAGAGTCTTGAAAGCGCTCGAGGAGAAGAAGAGCAAGGTCG TCTGGCAAAAAGAGAGAGGAGGGCGGCCGGGCGGAGTGGGGTGTGGTGGG GGTGTTGTTTCAGCGGGCGATTTTTTCATTTTTTCCGCGTTACGGAGCCT TGTCTATTTTCTGCGTGACACCCATGTGTCTCGTGTATCTGGCCTTATTG TAGGCACATTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGAGAGGGGGTT TTTTTGCCCCCAGGGCTTTTTTCACGGGGCGCCGTAACCCGGAATTGGGG ACTTCGCAAGGGCCCNNNNNNNNNGGGGGGGGGGGGGGGGTGGTTGGGTG GGGTGGGGGGGTGTGGTTGGGGTTTGGGGTTTTTTTTTGTTTTTTTTTTT TTTTTTTTTTTTGGGGGGGGGGGTGAGAGGGGGTTTTTTTACACCAAGGA CTTTTTGCAGCGGCAGCAGGATTCTGAAGTTGGGGCGTTCGCAAGGGCCC TTTGTTTCCCCGCGGGGGTTGTCTTGTAGGTACATATTTAGGTGGAATGT GCTGCACTTTTGTCATGCACCGAATGGTTTTAGTGCTTCGCTTGAACTAC AACCCTGAGAGAAAGGGAGAGTCGTGCCGCCGTTCCCCTGCTGTGGTGTC GGTCTTTTCCCCCCTGATCTTTCTTTCTTTGGTCGCTGCTCTTGTCAGCT GTCTTCCGACGCACGCGAGTTCCCAACCCGCGCACGGCAAGAACCCATCA TCGGGAACGTTTTTTGCGCGTTGATCCGCAAGACGTCTAAATAGTCTGCT AAATATCCTCTCTATTCTCCGGGCTTACATATTTTTATTTTTATCATCCC CCCGCCTTCCCTTCTCTCCCCTTCCCTTCCCTTCCCCTCGCTTCTTGTCG TGTTCCTTGCCAGGCGTTGTGGCAAAAGTACGGGCCGATTGGGGCGATGG CGCTAGCCGTAGTATTCATCCTCTGGTGGAAATTTTTCTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1400:1813..4703+

>mRNA_L-elsbetiae_contig1400.2996.1 ID=mRNA_L-elsbetiae_contig1400.2996.1|Name=mRNA_L-elsbetiae_contig1400.2996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig1400:1813..4703+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAACAAAAACACGATATTTCCGCAGGTGGAGACGGCGGCACGACC
ATACGCCTTCATCAAATTCGACAAGATGAAAAACAAAAACACGATATTTC
CGCAGGTGGAGACGGCGGCACGACCATACGCCTTCATCAAATTCGACAAG
GTGATTCAGCGTAAGCGGAAAGAGTACCTTGATCCTCAGAGCCGGAACAA
CATGGCACGGCTCAATGACGACCTTGCCGACATCCACAACATCATGAAGC
AGAACATCGAGGAGGTCCTCAACCGAGGGGAGAAGCTAGACCGTGATTCA
GCGTAAGCGGAAAGAGTACCTTGATCCTCAGAGCCGGAACAACATGGCAC
GGCTCAATGACGACCTTGCCGACATCCACAACATCATGAAGCAGAACATC
GAGGAGGTCCTCAACCGAGGGGAGAAGCTAGACCACGTTTCGGAGATCTC
GAAGACGCTGTCAACGCAGGCGGAGCAGTTCAAGTGGAGCTCGAAAAAGC
TGTCACTGATGACGTTTCGGAGATCTCGAAGACGCTGTCAACGCAGGCGG
AGCAGTTCAAGTGGAGCTCGAAAAAGCTGTCACTGATGGCGTTGTGGCAA
AAGTACGGGCCGATTGGGGCGATGGCGCTAGCCGTAGTATTCATCCTCTG
GTGGAAATTTTTCTGAGCGTTGTGGCAAAAGTACGGGCCGATTGGGGCGA
TGGCGCTAGCCGTAGTATTCATCCTCTGGTGGAAATTTTTCTGA
back to top