mRNA_L-elsbetiae_contig140.2992.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig140.2992.1
Unique NamemRNA_L-elsbetiae_contig140.2992.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig140.2992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig140contigL-elsbetiae_contig140:940..1879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size940
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig140.2992.1prot_L-elsbetiae_contig140.2992.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig140 1262..1741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.5059505-UTR-L-elsbetiae_contig140:939..12611622815552.5059505-UTR-L-elsbetiae_contig140:939..1261Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig140 940..1261 +
1691682955.2237751-UTR-L-elsbetiae_contig140:939..12611691682955.2237751-UTR-L-elsbetiae_contig140:939..1261Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig140 940..1261 +
1622815552.532076-UTR-L-elsbetiae_contig140:1741..18791622815552.532076-UTR-L-elsbetiae_contig140:1741..1879Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig140 1742..1879 +
1691682955.2436185-UTR-L-elsbetiae_contig140:1741..18791691682955.2436185-UTR-L-elsbetiae_contig140:1741..1879Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig140 1742..1879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.5213256-CDS-L-elsbetiae_contig140:1261..17411622815552.5213256-CDS-L-elsbetiae_contig140:1261..1741Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig140 1262..1741 +
1691682955.2336664-CDS-L-elsbetiae_contig140:1261..17411691682955.2336664-CDS-L-elsbetiae_contig140:1261..1741Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig140 1262..1741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig140.2992.1

>prot_L-elsbetiae_contig140.2992.1 ID=prot_L-elsbetiae_contig140.2992.1|Name=mRNA_L-elsbetiae_contig140.2992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
MCSADRALVYREKSSCHGPNSAGKICTLRGKRANGITLFATPTPVCPCPY
HEVTHLTDALKLLRGLKRRSLPCSHQSSAPQGSTHLKKTDWLSSPRGRTR
TTKFFALHPSFRSVRDTAPNKRQLTTTRHTIFSITTSIPIDSFGCNPPRS
ILAADGRWT*
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mRNA from alignment at L-elsbetiae_contig140:940..1879+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig140.2992.1 ID=mRNA_L-elsbetiae_contig140.2992.1|Name=mRNA_L-elsbetiae_contig140.2992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=940bp|location=Sequence derived from alignment at L-elsbetiae_contig140:940..1879+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGGTTTGGAGGTCAGCCTAATGCCCGCCATGAACACAATGGTAGCATA
CCCGACAGAGGACTAACTCACGCAAACGAAACAACGGTCAACGTCACCGC
GGACGTAACCTAACTTGTCGGCTTCCGGCCGTCGTTTCTTTACCACCCAC
ACCCTTCCGCCCTCTCGTCCCTCCCCCAAAGCCCCACCAGCTACTTCGTG
CACCCGCACGACCATTTGTGAGAGAGCATAACACACGCCGCAAATTTCCT
TTCTAGAGTTTCCTTGAATGTGCCGATTCGAGACTCCTCCCGCTGCTCTA
ATCCTCCGAACACAGCCCTAGCATGTGTTCGGCTGACAGGGCACTTGTCT
ACAGGGAAAAATCTTCGTGTCACGGGCCAAACTCTGCCGGAAAGATCTGC
ACCTTACGAGGCAAGAGGGCGAACGGTATTACCCTCTTCGCAACACCCAC
TCCCGTTTGCCCCTGCCCCTACCATGAAGTTACCCACCTCACAGATGCTC
TAAAGCTTTTGAGAGGGCTCAAAAGACGCTCACTCCCCTGCTCGCACCAG
TCATCCGCACCCCAAGGCTCGACCCATCTGAAAAAGACCGATTGGCTCTC
TTCCCCACGGGGAAGAACCCGAACCACTAAATTCTTTGCACTGCACCCCT
CCTTCCGTTCGGTTCGAGACACAGCACCCAACAAAAGACAGCTAACCACC
ACACGCCACACCATCTTCAGCATCACCACCAGCATTCCTATTGATAGCTT
CGGCTGCAATCCACCCCGTTCCATCCTCGCAGCCGATGGCCGGTGGACGT
GATAGTCAAGGAAGGGGAAGGCGACTCAAAACAGGATTGGTTGGGGTTGG
TGCGCCGCATTTCCTCCTCAGACCAAAACCGTCCTCGGGAAGGAACGCTT
CTAAGCCGGCTCTGCCCGTCCTCTGGACTTGTAGCCACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig140:940..1879+

>mRNA_L-elsbetiae_contig140.2992.1 ID=mRNA_L-elsbetiae_contig140.2992.1|Name=mRNA_L-elsbetiae_contig140.2992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig140:940..1879+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTTCGGCTGACAGGGCACTTGTCTACAGGGAAAAATCTTCGTGTCA
CGGGCCAAACTCTGCCGGAAAGATCTGCACCTTACGAGGCAAGAGGGCGA
ACGGTATTACCCTCTTCGCAACACCCACTCCCGTTTGCCCCTGCCCCTAC
CATGAAGTTACCCACCTCACAGATGCTCTAAAGCTTTTGAGAGGGCTCAA
AAGACGCTCACTCCCCTGCTCGCACCAGTCATCCGCACCCCAAGGCTCGA
CCCATCTGAAAAAGACCGATTGGCTCTCTTCCCCACGGGGAAGAACCCGA
ACCACTAAATTCTTTGCACTGCACCCCTCCTTCCGTTCGGTTCGAGACAC
AGCACCCAACAAAAGACAGCTAACCACCACACGCCACACCATCTTCAGCA
TCACCACCAGCATTCCTATTGATAGCTTCGGCTGCAATCCACCCCGTTCC
ATCCTCGCAGCCGATGGCCGGTGGACGTGAATGTGTTCGGCTGACAGGGC
ACTTGTCTACAGGGAAAAATCTTCGTGTCACGGGCCAAACTCTGCCGGAA
AGATCTGCACCTTACGAGGCAAGAGGGCGAACGGTATTACCCTCTTCGCA
ACACCCACTCCCGTTTGCCCCTGCCCCTACCATGAAGTTACCCACCTCAC
AGATGCTCTAAAGCTTTTGAGAGGGCTCAAAAGACGCTCACTCCCCTGCT
CGCACCAGTCATCCGCACCCCAAGGCTCGACCCATCTGAAAAAGACCGAT
TGGCTCTCTTCCCCACGGGGAAGAACCCGAACCACTAAATTCTTTGCACT
GCACCCCTCCTTCCGTTCGGTTCGAGACACAGCACCCAACAAAAGACAGC
TAACCACCACACGCCACACCATCTTCAGCATCACCACCAGCATTCCTATT
GATAGCTTCGGCTGCAATCCACCCCGTTCCATCCTCGCAGCCGATGGCCG
GTGGACGTGA
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