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Homology
BLAST of mRNA_L-elsbetiae_contig14.2983.1 vs. uniprot
Match: A0A6H5L6C7_9PHAE (GOLD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6C7_9PHAE) HSP 1 Score: 236 bits (602), Expect = 3.070e-70 Identity = 124/207 (59.90%), Postives = 158/207 (76.33%), Query Frame = 2
Query: 332 RSAVALAGLSAAHGIAPTPIQLDVTGGETRCLADTVRVNEDTTFSFRAVEMTGTSTENIKVIVEHPNGQSPYVTDLTTAKEEHRVEADKGEGGFTYKVCFQSFQAKGRKARVELTETTVWPLAEARPKVPKHLESVDRLLQHAKRVAESLEQQLKEGLTSESEWTDSDRVLRSRINKVAGFTILVLLSVSGWQLMLLNRFFRSKKLI 952
R A+ L GLS A+GI PTPI +DV GETRC+ D+VRV EDTTF+FRA + G ++ +KVI+EHPNG+ P++ +LT +E HRV DKGEGG TY+VCF++ + KGR RVEL ETT+ + + +V KHL+ VD LL+HAK +A+SL +QL+E +SE E DSD+VLRSRIN VA FT+L LLSVSGWQL LLN+FFRSKKLI
Sbjct: 4 RYALVLVGLSIAYGIEPTPILIDVLPGETRCVGDSVRVGEDTTFTFRAAPVDGPFSDKVKVILEHPNGEEPFIAELTEERESHRV--DKGEGGGTYRVCFRNMKTKGRSTRVELVETTL-AVTQGASQVAKHLQPVDELLKHAKELAKSLSEQLRENASSEREGLDSDKVLRSRINIVAAFTVLGLLSVSGWQLSLLNKFFRSKKLI 207
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | GOLD |
Ec32 ortholog | Ec-28_000220.1 |
Exons | 6 |
Model size | 1997 |
Cds size | 636 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815550.9935703-UTR-L-elsbetiae_contig14:1332..1651 | 1622815550.9935703-UTR-L-elsbetiae_contig14:1332..1651 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14 1333..1651 + |
1691682954.2029867-UTR-L-elsbetiae_contig14:1332..1651 | 1691682954.2029867-UTR-L-elsbetiae_contig14:1332..1651 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14 1333..1651 + |
1622815551.0835638-UTR-L-elsbetiae_contig14:6014..7056 | 1622815551.0835638-UTR-L-elsbetiae_contig14:6014..7056 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14 6015..7056 + |
1691682954.2887647-UTR-L-elsbetiae_contig14:6014..7056 | 1691682954.2887647-UTR-L-elsbetiae_contig14:6014..7056 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14 6015..7056 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815551.006278-CDS-L-elsbetiae_contig14:1651..1752 | 1622815551.006278-CDS-L-elsbetiae_contig14:1651..1752 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14 1652..1752 + |
1691682954.2162592-CDS-L-elsbetiae_contig14:1651..1752 | 1691682954.2162592-CDS-L-elsbetiae_contig14:1651..1752 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14 1652..1752 + |
1622815551.018863-CDS-L-elsbetiae_contig14:2670..2736 | 1622815551.018863-CDS-L-elsbetiae_contig14:2670..2736 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14 2671..2736 + |
1691682954.2319124-CDS-L-elsbetiae_contig14:2670..2736 | 1691682954.2319124-CDS-L-elsbetiae_contig14:2670..2736 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14 2671..2736 + |
1622815551.0323822-CDS-L-elsbetiae_contig14:3142..3326 | 1622815551.0323822-CDS-L-elsbetiae_contig14:3142..3326 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14 3143..3326 + |
1691682954.244444-CDS-L-elsbetiae_contig14:3142..3326 | 1691682954.244444-CDS-L-elsbetiae_contig14:3142..3326 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14 3143..3326 + |
1622815551.044544-CDS-L-elsbetiae_contig14:3930..4023 | 1622815551.044544-CDS-L-elsbetiae_contig14:3930..4023 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14 3931..4023 + |
1691682954.2544181-CDS-L-elsbetiae_contig14:3930..4023 | 1691682954.2544181-CDS-L-elsbetiae_contig14:3930..4023 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14 3931..4023 + |
1622815551.059099-CDS-L-elsbetiae_contig14:5205..5378 | 1622815551.059099-CDS-L-elsbetiae_contig14:5205..5378 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14 5206..5378 + |
1691682954.270508-CDS-L-elsbetiae_contig14:5205..5378 | 1691682954.270508-CDS-L-elsbetiae_contig14:5205..5378 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14 5206..5378 + |
1622815551.0716279-CDS-L-elsbetiae_contig14:5995..6014 | 1622815551.0716279-CDS-L-elsbetiae_contig14:5995..6014 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14 5996..6014 + |
1691682954.2808628-CDS-L-elsbetiae_contig14:5995..6014 | 1691682954.2808628-CDS-L-elsbetiae_contig14:5995..6014 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14 5996..6014 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig14.2983.1 >prot_L-elsbetiae_contig14.2983.1 ID=prot_L-elsbetiae_contig14.2983.1|Name=mRNA_L-elsbetiae_contig14.2983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
MKLLRSAVALAGLSAAHGIAPTPIQLDVTGGETRCLADTVRVNEDTTFSF RAVEMTGTSTENIKVIVEHPNGQSPYVTDLTTAKEEHRVEADKGEGGFTY KVCFQSFQAKGRKARVELTETTVWPLAEARPKVPKHLESVDRLLQHAKRV AESLEQQLKEGLTSESEWTDSDRVLRSRINKVAGFTILVLLSVSGWQLML LNRFFRSKKLI* back to topmRNA from alignment at L-elsbetiae_contig14:1333..7056+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig14.2983.1 ID=mRNA_L-elsbetiae_contig14.2983.1|Name=mRNA_L-elsbetiae_contig14.2983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5724bp|location=Sequence derived from alignment at L-elsbetiae_contig14:1333..7056+ (Laminarionema elsbetiae ELsaHSoW15) CTTTCTTTACACATGGGTACGCCCTTCTTACACACACGACCCCCCCCCCC
GGCGGGCGGCGGAAACCAGGCAGGGCACACTGCTGTGCGGTGGGGTTCAT
CATACTGGCTCCGACTACTGTTGATCAAGCTTACCTGGCAACGCCGACTT
GCAAGAAAAATTAGACGACAACTGGCGCCTTCGGCAATATTGCATCTGCG
GAAGTATTGCCAAGAGAGCGAGCGGCGTAACTTGCGAGGAGCGACAACAC
GGGCGGGTGTCTTCCATCCAAGCTCTAAACGCAGGCGGCCTCGGGAGAGT
GCAGCCAGTGGTAGAGAACATGAAACTTCTCCGTTCTGCGGTGGCATTGG
CTGGCCTGTCCGCCGCGCACGGGATAGCGCCTACTCCAATCCAGTTGGAC
GTGACCGGCGGCGAGACAAGGTATGCGCACAGAGAGCCCCAGGGAAGGCC
GTCTCGGCTGCTGGCGTTGCTGCATCTGGACTGTGGTTGTAGATGCGCAG
AAAACGGATTGGAGAAGCATCAAACAAAGAATTGTGTACAGCGTTGGTTG
TGAGAGAAAGAGGACGGCCGCTGGCGAGAACCAGCACTTTCTTCGAGGTC
TTGGATACAATAGGGCGCACGCAGCGGTATCAGCGCCGGCACCTCCGTGG
TGGTGCTCCTATGGCGGGATATTTCCCAGTGCCCTATCCAGGGAAGTATC
TGTCACGCCTAGTAAACACAGTTGATTTTGGGATGCGACGTCAGTAGCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCGACAGCC
GAAAAAGGCGCCCCAAAACCTCCACCCCCGCCCCCCGAAAAAAAAACCCN
NNNNNNNNNCGCCTAGTAAACACAGTTGATTTTGGGATGCGACGTCAGTA
GCCCCCCGCCCCCCCCCCCCGCGCCCCCAAAGAGACCCAGGTTGGACGAG
GGAATGTTGCCACTAATCTCTGCACGATCGTGTCAGGCAAATCAACCTTT
GCTCGGGGTGTAGTAATCTTGTAATCTTGTGACGTCGTCCAGCATACTTT
GCCTCTTAGTGGATGCATGGTGAGCACTAGCCTACGTACCGCACACAAAA
ACGGGATGAAGTGTACAGCGGTCAGCGAACCTCGGGACTCTATTTCCCAC
ATCAGCCCTTGGCGGGCTGCGGGTCCCGCGTTGGCTGTTGAGTTCAGAGC
GCTGGTTGTTGAGGTATCTATGATATTGGTACCCTCCTCGAGAAGAATAC
CATGCTGGATCGTCCGTTCCCTTGTTCTCTCTCAAAGCTGATAGCCGTGC
ATGTGGTCGTGTGATGGATACATGTGCGGGGATGTTAGGTGCCTGGCGGA
CACCGTGCGAGTAAACGAGGACACCACCTTCTCGTTCCGGGCGGTGGAAA
TGACGTGAGTCATACACCAAAATAGAGGACAGCAACAACAGTCAGATCGG
ATGTTTGGTGTGTCACCCGGTTGGTACGTATACACGTACAGGCAGAACAG
TGCGTGAAGGGTATTAACTTGTAGCCCCAAGTTCCCTCTTATGTTAGTTC
TCGTGATAACGGACAGGTGGTGAGTGAACCATCGAGGATCTCCTGTTTCT
GCTGCGTCCCAACCTACCGATGGTTTGATCTTTATCGCCCCTTCGCCACG
AGTACGGGTCTACGTTTTTCATGTGTGGAGCCTTGTCCCGCCATCAAAAC
GAAGCAAGCTGCTGTGTCTGTTTTCTTTGTCGGGAAGAAGGCACGAATGA
TCCAGACTTATAGAGACCTCACGTTTTGTCTTACGCGCGTCTCGTTTATC
CGTATCGCAGAGGTACGAGTACAGAAAACATCAAAGTGATCGTGGAGCAC
CCAAATGGGCAAAGCCCGTACGTTACTGATTTGACAACGGCGAAAGAGGA
GCACCGCGTGGAGGCCGACAAGGGGGAGGGGGGATTCACGTACAAAGTTT
GTTTTCAAAGCTTTCAGGCCAAGGGGAGAAAAGCCAGAGTGGAGGTAAGA
GACGAGAGGGTGTTCACCCAACGTGCCATACCTTTTGACGGCGCCCTGCT
GCTTCTTTCCGTTACTGGTGGTGTTGATGTTCAAGAACTGCGATGTTCAA
GAACTGCGATGTTCAAGACCTACGAAAGCGTAGATGTGAGCGTAAAACCA
TGGACCGCTAGCCGCTGTTCTGTTGGTCATGTGCACGGATCGTGTCGATT
GCTCTCGAGTGATTTTGGTGTTGATGCTGACATACCACACTCGATGGCTT
CGCACCCCAAGCGCAACCGATATGGGGCCGGTTTCTCGCGATCTCCCTCT
ACAAAGATTTTGCGTGGATGATTGTCTCATCTTTGTAGCTGGCATACCGG
GCTGGTGATTGCCTCTTGCATTGTCTTGATTGTGCAGAGCCATTGATCCT
TTCCATCGGGCTATTGCTGTATACTATCTGTCTTCCGGTCAAATCTTGTT
CCGACGGTTGCTTTGTTGCTGGTCCTCAAATTATTTGACTGGTTGACCGC
TCGATCGATCGTTACACCTTTGACCGTCTTGACCATCGTATCGCCCAATC
CCCCGGTGTGGTTGTTTAAAATCGCTGGATATTTTTCGCGGCTCGCAGCT
GACGGAGACGACGGTATGGCCGCTAGCCGAAGCTAGACCCAAGGTGCCGA
AGCACCTCGAGTCGGTAGATCGTCTCCTTCAGCATGCCAAGGTGAGCAGT
TCGAACAGCCGAACTACGATAGCACATCTTTCACACATGTCACAACCGTG
GCAGAGAGAATCGTACTCACGGCTGCGTTTTCGTGTAGGCGGTCGAGTGC
CCGTGTTGTCTGCCTTTGTCGACTAGCTGTTGAAACTATGGGAGTAATGG
TCTTGGTTTTTCCTCACACGAACCTGTAGATCGACTAGATTTGCTCACGC
CCTGAAAACCCCGGTTTCGACTGCGTACCCTTTATACCCTGTGACTAGCT
CACTAGGTCAAGCTTCTCTCTTACGATATCATGCGTGTTTTGTGATACGG
ATTTCCACGATCGACTCGGTTTGCTGGCTATTGACGGACGTTGCAGCACA
GTGCAATTTCCCCTGAGGTTTCAGCTTCCTGACAACGCTGCATTTGGACC
GGTGCTGCGGAACTACCCGATGCTGCCAGCTGTCAGGCTAGAGGTGTTAC
TGAGGTCGAAAACGCTCTGTTATTGACATCGGTGCCGTGGTTTGTAGCCG
TATATTTGTGGCGTGAGTGTGGATCTCCCTCGAACAAAAAGGTTCGCACG
GCGTGTTATTGAGCATGCCTTTAGCTGCCGGTCAGTCATTTCTTTATAAA
GACTCACGCTTTTTCGAGCATTCGCATGCCTACCGTAGGTGACACAAGAT
ACCACACCCCCTGGGCAGATTTTTAAAGCTCGATTCCTCCCCAGCAAGAA
AAGCGACAGTGCCAAAAAGGGTAGCGTTGGAAAGATCTAGTCGAGGGCTG
TCCGAAAATGTTTCGTTTGGTGCTGGCATCTTCTTCGTTAGGGAGTAATG
GAGCTCTAAAATTCGACCCAGGGGGTGTGGTATCTTGTGTCACCTACGGT
AGGCTGCTGCTGTGTCATCCGCAGCGCCGCGTTTGTTGTCCGAAAGAGAA
GGAAAGAAGCTATTATTGTCCCACAGAGACGTGACATGCCTCGGTCATTC
TTTCGATGCGTCCTCGTCGTTGCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCAACCCCCGGGGACCAACAACAGGC
GCGNNNNNNNNNNTGTCCGAAAGAGAAGGAAAAAAGCTTTTTTTGTCCCC
CCAGGACGGGAACTGCCCCGGTCTTTCTTTCGATGCGTCCTCGTCGTTGC
CCCCCCCCCCCCCCTCCCCTCAGCGAGTGGCAGAAAGCCTGGAACAGCAA
CTGAAGGAAGGTTTGACAAGCGAGAGCGAGTGGACCGACTCCGACAGGGT
GCTCCGATCTCGCATCAACAAGGTGGCCGGGTTTACCATCTTGGTGCTCC
TGTCCGTCAGCGGCTGGCAGCTCATGTTGCTCAACAGATTCTTCCGGTGA
GGGCATGCCCCCCGCCACCTCCTACCCCTGGAGCTCCGTAACACGGCCTA
GTCCTGGCCCCTACCCCAACCGTACAACTGAGTCCTGTCGTTCACACCAA
GTTCTTTGTGAGGGGCAGGGTTGGCAGCTGCGTTGATTTTTTTTCTCCGC
CTTTTCCCGAAGGTTTCCTTTGCTTTGCTTGGCTTTACTTTACTCGGTTG
GGTGTGCGTCCCGAGAGTGCGTTTGCTGGCCTGCAGAGGAAACCGCGTGC
TCTGTAGATTTACTCCAGAATACTATACTCTGCACTAATGCCTCCTAGAA
CATGTTCGAAGCCAGTTCACAACGTCGCCTTGGACCAGTACCCTTGCGCT
GACTCAAGTGCGGTCAAGTTGGATGTTGCTTTGACGGGAAAAATATGGTA
ACTTTATAGTTCCAAACGTTTATTGAGCATCTCCCATGTATCTGTTGTAT
CTTGTACTGTGTGGTACAAAGAATGCCGGTGCTGTGTGCGACCGAGTGTG
GTTCCCGCATTTGGAACCAACAACAGCCCTGATGGGCAGTTGTAGTTTTT
CCGCCAGTGCTAATTTTCGTCTCTGTACTCCTCCCCTCACTTCGTTCCGT
TCGCGCTCTGCAGATCGAAAAAACTCATCTGAGTGATTCCGCGCCGTTTC
GCCCTTCTACTGTGCCTCCGGAGTGCTGTGGCGTGAGTCTTTCTACTGGC
CTATTACTATGCGATTGACGTAGTGTATCTTGAATTCAACGGTGGACGTT
TCCTGTCGACTTAGCGCTGTTTCCTCTTGGTGCGATGTCAACCCCTTTTA
CATGCGTTGGCTTTGCTTAACTCTTCGGCGGGGAAGGGAGAATTGCTTCC
TTGGAATTTTCCAGTGACTTGGTCGTGGGCGCTGGAGGCGTTGGTTCAAG
GCAATCCCTGCCTTTTTCAGACGTGACCGGACAGATTGTTTATATGAGCG
TCATCATGCTGATGTGTTGTTTGACGTATACTGCAACGGTTCATTGGGGT
CGAAACCATTCAGTCGTGTTTTCTTGATGGTTTCGAGCGTAAATATAGCC
TTATTCCGTACATCTCTCGGTTGTCATGCAGCATTTGACATGTGTTTACC
TTGTGTGCGTGAGGTCCGCGAAACCTGCAAAACTAGAACGTCCGCCGGTA
TCTGTGCCCCTGCGCTGCACAGTACGGTAGGTAACTAGCTGCAGCTCATG
TGTGCGATCTTCGCCAGCCAGCCGAATGCATTGCTGTTATGATTGTGTAG
AGCAAAGTGCCTAATTTAGCACGCTTCGCTTCGGGTGAAGTGTGGCGTTC
AGCCCTCTGAATTAGTCTATTTTTTGTACCGTGTAGTTTGGTAAAGCGGC
GTGGCAGGAGCAGGGTGTCCATACGATCCCTGAGCACGGCATACGTGTCA
GGAGGCGTCTCTACAGAGTTCGATCGTTGAACATTCTGTGGACTCGGAAT
GTATTTAAATTACTTTTATTCTGGTGCATAGGAGCGTGTGCAGAATATTC
CCGTTTCTGTCCAATGTTTCGTACAGCCGAGTCTCGCTGCAAAAGCGTGG
TTGTCGATGCCCGTTTTATGACGTCGGCTCTTTGGTTTCTGAACTAGCAG
TGGCTGCAGTATATCAAGGCTGACCTCTCTAAGCCACCTACTCACAAGTG
CTGTGTTGCGGGGCTCTATCTGGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig14:1333..7056+ >mRNA_L-elsbetiae_contig14.2983.1 ID=mRNA_L-elsbetiae_contig14.2983.1|Name=mRNA_L-elsbetiae_contig14.2983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1272bp|location=Sequence derived from alignment at L-elsbetiae_contig14:1333..7056+ (Laminarionema elsbetiae ELsaHSoW15) ATGAAACTTCTCCGTTCTGCGGTGGCATTGGCTGGCCTGTCCGCCGCGCA CGGGATAGCGCCTACTCCAATCCAGTTGGACGTGACCGGCGGCGAGACAA GATGAAACTTCTCCGTTCTGCGGTGGCATTGGCTGGCCTGTCCGCCGCGC ACGGGATAGCGCCTACTCCAATCCAGTTGGACGTGACCGGCGGCGAGACA AGGTGCCTGGCGGACACCGTGCGAGTAAACGAGGACACCACCTTCTCGTT CCGGGCGGTGGAAATGACGTGCCTGGCGGACACCGTGCGAGTAAACGAGG ACACCACCTTCTCGTTCCGGGCGGTGGAAATGACAGGTACGAGTACAGAA AACATCAAAGTGATCGTGGAGCACCCAAATGGGCAAAGCCCGTACGTTAC TGATTTGACAACGGCGAAAGAGGAGCACCGCGTGGAGGCCGACAAGGGGG AGGGGGGATTCACGTACAAAGTTTGTTTTCAAAGCTTTCAGGCCAAGGGG AGAAAAGCCAGAGTGGAGAGGTACGAGTACAGAAAACATCAAAGTGATCG TGGAGCACCCAAATGGGCAAAGCCCGTACGTTACTGATTTGACAACGGCG AAAGAGGAGCACCGCGTGGAGGCCGACAAGGGGGAGGGGGGATTCACGTA CAAAGTTTGTTTTCAAAGCTTTCAGGCCAAGGGGAGAAAAGCCAGAGTGG AGCTGACGGAGACGACGGTATGGCCGCTAGCCGAAGCTAGACCCAAGGTG CCGAAGCACCTCGAGTCGGTAGATCGTCTCCTTCAGCATGCCAAGCTGAC GGAGACGACGGTATGGCCGCTAGCCGAAGCTAGACCCAAGGTGCCGAAGC ACCTCGAGTCGGTAGATCGTCTCCTTCAGCATGCCAAGCGAGTGGCAGAA AGCCTGGAACAGCAACTGAAGGAAGGTTTGACAAGCGAGAGCGAGTGGAC CGACTCCGACAGGGTGCTCCGATCTCGCATCAACAAGGTGGCCGGGTTTA CCATCTTGGTGCTCCTGTCCGTCAGCGGCTGGCAGCTCATGTTGCTCAAC AGATTCTTCCGCGAGTGGCAGAAAGCCTGGAACAGCAACTGAAGGAAGGT TTGACAAGCGAGAGCGAGTGGACCGACTCCGACAGGGTGCTCCGATCTCG CATCAACAAGGTGGCCGGGTTTACCATCTTGGTGCTCCTGTCCGTCAGCG GCTGGCAGCTCATGTTGCTCAACAGATTCTTCCGATCGAAAAAACTCATC TGAATCGAAAAAACTCATCTGA back to top
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