mRNA_L-elsbetiae_contig13968.2966.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13968.2966.1
Unique NamemRNA_L-elsbetiae_contig13968.2966.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13968.2966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13968contigL-elsbetiae_contig13968:3279..4439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size699
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13968.2966.1prot_L-elsbetiae_contig13968.2966.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13968 3279..4201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.5023353-CDS-L-elsbetiae_contig13968:3278..33401622815549.5023353-CDS-L-elsbetiae_contig13968:3278..3340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13968 3279..3340 -
1691682953.317749-CDS-L-elsbetiae_contig13968:3278..33401691682953.317749-CDS-L-elsbetiae_contig13968:3278..3340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13968 3279..3340 -
1622815549.5175686-CDS-L-elsbetiae_contig13968:3804..42011622815549.5175686-CDS-L-elsbetiae_contig13968:3804..4201Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13968 3805..4201 -
1691682953.3292375-CDS-L-elsbetiae_contig13968:3804..42011691682953.3292375-CDS-L-elsbetiae_contig13968:3804..4201Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13968 3805..4201 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.5280461-UTR-L-elsbetiae_contig13968:4201..44391622815549.5280461-UTR-L-elsbetiae_contig13968:4201..4439Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13968 4202..4439 -
1691682953.341524-UTR-L-elsbetiae_contig13968:4201..44391691682953.341524-UTR-L-elsbetiae_contig13968:4201..4439Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13968 4202..4439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13968.2966.1

>prot_L-elsbetiae_contig13968.2966.1 ID=prot_L-elsbetiae_contig13968.2966.1|Name=mRNA_L-elsbetiae_contig13968.2966.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
MCWCIVQGCPLHAAEHKILHIAMKATTFTLVLVLASHNAGAFVSHLGSPH
KQHDVARRSCTLPSNVRATAISRVARRRRIHHTPCVMSAVGGDNAAEAGD
KEGEDESTVIPPGDTAAAADEAAGPEPEVALQASADGKAGGVVQSGGDTG
GDG
back to top

mRNA from alignment at L-elsbetiae_contig13968:3279..4439-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13968.2966.1 ID=mRNA_L-elsbetiae_contig13968.2966.1|Name=mRNA_L-elsbetiae_contig13968.2966.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1161bp|location=Sequence derived from alignment at L-elsbetiae_contig13968:3279..4439- (Laminarionema elsbetiae ELsaHSoW15)
CCCAATATTACGTCACTATATGGAATACCGAAAATTCTCACGGGAGTCCC
GTCTCCAATGTGGGTTAGGTTCCATTTTTGATTATCTGCTTATCTTTTAA
AACAACCCCCTCTAACCCGTCTCCAATGTAGGGTATGTTATCTTTCAAGA
CACACCACGACCCCCCACCCACTTTTTCCATTTTTCGAAATATTGCCCCC
CATGCCTTTCTCTCCTATTGTGCCCCCCATGTGTGCTCATGTGTTGGTGT
ATCGTGCAGGGCTGCCCACTCCACGCAGCAGAACACAAGATCCTACACAT
CGCCATGAAAGCCACAACTTTTACACTGGTTCTAGTGCTGGCCAGTCACA
ACGCCGGCGCTTTCGTAAGCCACCTTGGTTCCCCGCACAAGCAGCATGAT
GTTGCACGAAGGTCATGTACCTTGCCTTCGAACGTGCGAGCAACAGCAAT
TAGCAGGGTAGCTCGGCGCAGACGTATCCACCACACGCCGTGCGTCATGT
CCGCGGTGGGTGGCGATAACGCGGCCGAAGCAGGGGACAAGGAAGGGGAG
GATGAGAGCACCGTGATTCCGCCAGGCGATACTGCTGCTGCTGCTGACGA
GGCAGCTGGTCCTGAACCAGAGGTAGCACTACAAGGTTCGTAATGATGGA
ATTGGTGTTGGGGCGTGTGTGTTAATGTAAAGTGGTGGAATTGATATGCA
AAGCCGTTCGTATGCTCAATGCATACGTGATGTCTTGTTGGTGCATGCGA
CGTACACCCATATATGACGGAATATACCACCTCCCCACACGTAGATACAC
CGATTTGAATATCGGTCCAACGATTACGATTATGATGTTTATCACAGCGC
GTAGCTATCGTGATCGCCAAAATCTTGGCGGAATCACGCCACGATGGTCA
CCGAAGTGCTATATATATACAAGAAGATCCGGGTGCGCGTGCAGACCATC
TATTGTACATGCAGGTGGATGATACCTTGCCACCCCCCCTCTAGGCACGC
GCCATTTTTTGCTCTAAGCGCCGCCCCCAGCTGCAGCAGGCTCAACACGT
GATGCATCAAAACCGTGCGTGCTTGTGTTTCATCCGTGTGCGAACTCAGC
GTCCGCCGACGGGAAAGCAGGTGGGGTGGTACAAAGCGGCGGAGACACAG
GGGGAGACGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13968:3279..4439-

>mRNA_L-elsbetiae_contig13968.2966.1 ID=mRNA_L-elsbetiae_contig13968.2966.1|Name=mRNA_L-elsbetiae_contig13968.2966.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig13968:3279..4439- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTTGGTGTATCGTGCAGGGCTGCCCACTCCACGCAGCAGAACACAA
GATCCTACACATCGCCATGAAAGCCACAACTTTTACACTGGTTCTAGTGC
TGGCCAGTCACAACGCCGGCGCTTTCGTAAGCCACCTTGGTTCCCCGCAC
AAGCAGCATGATGTTGCACGAAGGTCATGTACCTTGCCTTCGAACGTGCG
AGCAACAGCAATTAGCAGGGTAGCTCGGCGCAGACGTATCCACCACACGC
CGTGCGTCATGTCCGCGGTGGGTGGCGATAACGCGGCCGAAGCAGGGGAC
AAGGAAGGGGAGGATGAGAGCACCGTGATTCCGCCAGGCGATACTGCTGC
TGCTGCTGACGAGGCAGCTGGTCCTGAACCAGAGGTAGCACTACAAGATG
TGTTGGTGTATCGTGCAGGGCTGCCCACTCCACGCAGCAGAACACAAGAT
CCTACACATCGCCATGAAAGCCACAACTTTTACACTGGTTCTAGTGCTGG
CCAGTCACAACGCCGGCGCTTTCGTAAGCCACCTTGGTTCCCCGCACAAG
CAGCATGATGTTGCACGAAGGTCATGTACCTTGCCTTCGAACGTGCGAGC
AACAGCAATTAGCAGGGTAGCTCGGCGCAGACGTATCCACCACACGCCGT
GCGTCATGTCCGCGGTGGGTGGCGATAACGCGGCCGAAGCAGGGGACAAG
GAAGGGGAGGATGAGAGCACCGTGATTCCGCCAGGCGATACTGCTGCTGC
TGCTGACGAGGCAGCTGGTCCTGAACCAGAGGTAGCACTACAAGCGTCCG
CCGACGGGAAAGCAGGTGGGGTGGTACAAAGCGGCGGAGACACAGGGGGA
GACGGGCGTCCGCCGACGGGAAAGCAGGTGGGGTGGTACAAAGCGGCGGA
GACACAGGGGGAGACGGG
back to top