mRNA_L-elsbetiae_contig13959.2963.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13959.2963.1
Unique NamemRNA_L-elsbetiae_contig13959.2963.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13959.2963.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.570e-6
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 3 
Query:    9 HVTDGMVNVASKRCTHPGCTKQPSFGKAGSK 101
            H    MVNV SKRC HPGCTKQPS+G+AGSK
Sbjct:   28 HKQQDMVNVVSKRCGHPGCTKQPSYGRAGSK 58
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BLAST of mRNA_L-elsbetiae_contig13959.2963.1 vs. uniprot
Match: D7FSL8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL8_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.440e-6
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 3 
Query:    9 HVTDGMVNVASKRCTHPGCTKQPSFGKAGSK 101
            H   GM+NV  KRC HPGCTK+PSFG AGSK
Sbjct:    9 HAKPGMINVRKKRCCHPGCTKKPSFGTAGSK 39
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BLAST of mRNA_L-elsbetiae_contig13959.2963.1 vs. uniprot
Match: A0A6H5JW94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW94_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 4.910e-6
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 3 
Query:   24 MVNVASKRCTHPGCTKQPSFGKAGSK-AEYCC 116
            M NV  KRC HPGCTK+PSFG AGSK AE+CC
Sbjct:    1 MFNVVDKRCGHPGCTKKPSFGTAGSKRAEFCC 32
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13959.2963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K5N3_9PHAE3.570e-674.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSL8_ECTSI4.440e-670.97EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JW94_9PHAE4.910e-675.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13959contigL-elsbetiae_contig13959:833..2887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1507
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13959.2963.1prot_L-elsbetiae_contig13959.2963.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13959 1456..2864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.1946754-UTR-L-elsbetiae_contig13959:832..14551622815549.1946754-UTR-L-elsbetiae_contig13959:832..1455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13959 833..1455 -
1691682953.149338-UTR-L-elsbetiae_contig13959:832..14551691682953.149338-UTR-L-elsbetiae_contig13959:832..1455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13959 833..1455 -
1622815549.2408972-UTR-L-elsbetiae_contig13959:2864..28871622815549.2408972-UTR-L-elsbetiae_contig13959:2864..2887Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13959 2865..2887 -
1691682953.1874754-UTR-L-elsbetiae_contig13959:2864..28871691682953.1874754-UTR-L-elsbetiae_contig13959:2864..2887Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13959 2865..2887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.213043-CDS-L-elsbetiae_contig13959:1455..16041622815549.213043-CDS-L-elsbetiae_contig13959:1455..1604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13959 1456..1604 -
1691682953.1640005-CDS-L-elsbetiae_contig13959:1455..16041691682953.1640005-CDS-L-elsbetiae_contig13959:1455..1604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13959 1456..1604 -
1622815549.2275653-CDS-L-elsbetiae_contig13959:2152..28641622815549.2275653-CDS-L-elsbetiae_contig13959:2152..2864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13959 2153..2864 -
1691682953.1782517-CDS-L-elsbetiae_contig13959:2152..28641691682953.1782517-CDS-L-elsbetiae_contig13959:2152..2864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13959 2153..2864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13959.2963.1

>prot_L-elsbetiae_contig13959.2963.1 ID=prot_L-elsbetiae_contig13959.2963.1|Name=mRNA_L-elsbetiae_contig13959.2963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=287bp
MVNVASKRCTHPGCTKQPSFGKAGSKAEYCCDHAKDGMVNVVSKRCAHPG
CTKQPSYGKASSKPEYCCDHAKGGMVNVINKRCTHHGCTKQPSYGMVGDA
AELCAQHAKRGMIDLRRKKQTGAEEGASSGLGRAGSMEESGSSAASRVCA
DRKRKRGPPPSTQTGTSFGGSSCGITDKGAREYVEVPVAQSSSNARRARA
RDGAAIAADWSSLEPDALVKTEARVKISCKAEPSEAHDGPECGRGGAPGA
AAGGGAAVALEPDTTAVKPEVTVTRPAERKRALVIP*
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mRNA from alignment at L-elsbetiae_contig13959:833..2887-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13959.2963.1 ID=mRNA_L-elsbetiae_contig13959.2963.1|Name=mRNA_L-elsbetiae_contig13959.2963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2055bp|location=Sequence derived from alignment at L-elsbetiae_contig13959:833..2887- (Laminarionema elsbetiae ELsaHSoW15)
GCCGTGACCATGTTACCGATGGGATGGTGAATGTCGCCAGCAAGAGATGC
ACACACCCAGGTTGCACCAAGCAGCCGTCATTCGGCAAGGCTGGCAGCAA
GGCAGAGTACTGCTGTGACCATGCGAAGGACGGGATGGTGAATGTCGTCA
GCAAGAGATGCGCACACCCAGGTTGCACCAAGCAACCGTCATACGGCAAG
GCTAGCAGCAAGCCAGAGTACTGCTGTGACCATGCGAAGGGAGGGATGGT
GAACGTCATCAACAAGAGATGCACCCACCATGGTTGCACCAAGCAGCCGT
CATACGGCATGGTTGGCGACGCGGCGGAGCTCTGCGCCCAACACGCCAAG
CGAGGCATGATTGATCTGCGACGCAAGAAGCAAACTGGTGCGGAGGAGGG
GGCTAGTAGCGGGCTAGGGCGAGCTGGTTCAATGGAAGAGAGTGGGAGTA
GTGCCGCTAGCCGTGTTTGTGCCGACCGAAAGCGGAAGAGAGGCCCTCCT
CCGTCCACGCAGACAGGAACTTCCTTCGGTGGTAGCAGTTGCGGGATCAC
CGACAAGGGAGCCCGTGAGTATGTGGAAGTACCTGTGGCTCAGTCGTCGT
CAAATGCACGAAGAGCACGAGCGCGAGATGGGGCGGCCATTGCTGCGGAT
TGGTCCTCGTTGGAACCGGACGCTTTGGTGAAGACGGAAGCACGAGTGAA
GATCTCGTGCAAGGCGGAACCCTCGGAGGCTCACGGTAGGTCGGAATCGC
GAGCTGCTGCTCTCGAAGATTTTTGTGGAGGTTGGTTTCGCCTTTGTTGG
GGCAGTATTTATTTACCAGGCCGTCATCAACCGTTCATCATTTCGTAGAT
GAACAGGGAAGGAAAGTGTACCCGGGGCATGTTCCGACTGGAAAACTCGA
AGGTGGAGTAGGTGGGCGGAGCAGGCGTGAGTACGCGTGCACATCACCCT
TGTCAAGTGCCTATCTCTTTTGGGATGCCGGACATGGTATATCAAGCCAT
CCAAGCCCTCGAAGAGGCGGCCTGAAGAGAGAGCGGCGGTGAAGCCTCTG
TGCCTTCTTGGCGGACGCCACGTGTGTGCAGTCAAAACCTTCACCATCGC
ACAGCAGTTGTAGTTCTGCTCAACAGCCCCGTGGTACGTGGCGATTTCCT
CGTGTTGTGTGTAGTAGTGCTCCAACCGCCGCGATGCTTCCACCCTGACC
GCCAAGGTTATCTCACTGTCGTTCTATCTGTTTCCTCGCGGTTGTTTTCT
GACCCCCCTCCCCTCCCCCCTCCCCATTGTCAGATGGACCGGAGTGTGGG
CGAGGCGGGGCGCCAGGTGCAGCCGCGGGAGGGGGAGCAGCGGTTGCGCT
CGAGCCTGATACCACCGCTGTGAAACCAGAAGTGACTGTTACTCGGCCAG
CGGAACGCAAACGGGCGCTGGTGATACCGTAGTCTTGAGTGGCAGGCGGC
GGGTGCGTGTTTAAATTTGTCCTCTCTCTGGCCGCGACCATTATTGATTC
CATCGAGCGTTCCTCTCTCTTCTCCGATGCTGGATCAGGAGTAGTACGTA
GACTAGAAGTAGCCTGGTAGCCAAGAGGCACTACTCATCATCGTCAGTGT
GGGGTGTGGGGGTTGTTTTTTCCCAACGATAGGGAGGCGTATGTACGACA
CGGAGAGGTTCGGCCTGGGCGTGTTCTTTGCGTGCTTGCGCTGGCACTTG
TTGCCTTTCGTGGCCAACACCTGGCAGAGTCATGCAGGGGAGGTGACGGA
CTTTTTCGACATTTTCGGTGTTTTTTAACTGGGCTGGACCAACATTACGT
CACTAGATATATGGAATACCGATGGAATCTCACACTGGAGTCCCGTCTCC
AATGTGGGTTGGGTTCCATTTTTGATGAGCTGTTTTCCTTTCAACACCGC
CCTGCAGCTCGACGCCGGAGTTGCCACTGATGTAACTACCGTCGTGTTGC
AACCCATAATAATAGCCATCAGCTGCCACCTTCTCTATCTCACTTGCTGT
GTTTACCACCCGTATCGCAATGGGCGCCCCCCTTCCCTCCCTTTATCTAC
CCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13959:833..2887-

>mRNA_L-elsbetiae_contig13959.2963.1 ID=mRNA_L-elsbetiae_contig13959.2963.1|Name=mRNA_L-elsbetiae_contig13959.2963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1722bp|location=Sequence derived from alignment at L-elsbetiae_contig13959:833..2887- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAATGTCGCCAGCAAGAGATGCACACACCCAGGTTGCACCAAGCA
GCCGTCATTCGGCAAGGCTGGCAGCAAGGCAGAGTACTGCTGTGACCATG
CGAAGGACGGGATGGTGAATGTCGTCAGCAAGAGATGCGCACACCCAGGT
TGCACCAAGCAACCGTCATACGGCAAGGCTAGCAGCAAGCCAGAGTACTG
CTGTGACCATGCGAAGGGAGGGATGGTGAACGTCATCAACAAGAGATGCA
CCCACCATGGTTGCACCAAGCAGCCGTCATACGGCATGGTTGGCGACGCG
GCGGAGCTCTGCGCCCAACACGCCAAGCGAGGCATGATTGATCTGCGACG
CAAGAAGCAAACTGGTGCGGAGGAGGGGGCTAGTAGCGGGCTAGGGCGAG
CTGGTTCAATGGAAGAGAGTGGGAGTAGTGCCGCTAGCCGTGTTTGTGCC
GACCGAAAGCGGAAGAGAGGCCCTCCTCCGTCCACGCAGACAGGAACTTC
CTTCGGTGGTAGCAGTTGCGGGATCACCGACAAGGGAGCCCGTGAGTATG
TGGAAGTACCTGTGGCTCAGTCGTCGTCAAATGCACGAAGAGCACGAGCG
CGAGATGGGGCGGCCATTGCTGCGGATTGGTCCTCGTTGGAACCGGACGC
TTTGGTGAAGACGGAAGCACGAGTGAAGATCTCGTGCAAGGCGGAACCCT
CGGAGGCTCACGATGGTGAATGTCGCCAGCAAGAGATGCACACACCCAGG
TTGCACCAAGCAGCCGTCATTCGGCAAGGCTGGCAGCAAGGCAGAGTACT
GCTGTGACCATGCGAAGGACGGGATGGTGAATGTCGTCAGCAAGAGATGC
GCACACCCAGGTTGCACCAAGCAACCGTCATACGGCAAGGCTAGCAGCAA
GCCAGAGTACTGCTGTGACCATGCGAAGGGAGGGATGGTGAACGTCATCA
ACAAGAGATGCACCCACCATGGTTGCACCAAGCAGCCGTCATACGGCATG
GTTGGCGACGCGGCGGAGCTCTGCGCCCAACACGCCAAGCGAGGCATGAT
TGATCTGCGACGCAAGAAGCAAACTGGTGCGGAGGAGGGGGCTAGTAGCG
GGCTAGGGCGAGCTGGTTCAATGGAAGAGAGTGGGAGTAGTGCCGCTAGC
CGTGTTTGTGCCGACCGAAAGCGGAAGAGAGGCCCTCCTCCGTCCACGCA
GACAGGAACTTCCTTCGGTGGTAGCAGTTGCGGGATCACCGACAAGGGAG
CCCGTGAGTATGTGGAAGTACCTGTGGCTCAGTCGTCGTCAAATGCACGA
AGAGCACGAGCGCGAGATGGGGCGGCCATTGCTGCGGATTGGTCCTCGTT
GGAACCGGACGCTTTGGTGAAGACGGAAGCACGAGTGAAGATCTCGTGCA
AGGCGGAACCCTCGGAGGCTCACGATGGACCGGAGTGTGGGCGAGGCGGG
GCGCCAGGTGCAGCCGCGGGAGGGGGAGCAGCGGTTGCGCTCGAGCCTGA
TACCACCGCTGTGAAACCAGAAGTGACTGTTACTCGGCCAGCGGAACGCA
AACGGGCGCTGGTGATACCGTAGATGGACCGGAGTGTGGGCGAGGCGGGG
CGCCAGGTGCAGCCGCGGGAGGGGGAGCAGCGGTTGCGCTCGAGCCTGAT
ACCACCGCTGTGAAACCAGAAGTGACTGTTACTCGGCCAGCGGAACGCAA
ACGGGCGCTGGTGATACCGTAG
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