mRNA_L-elsbetiae_contig1393.2949.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1393.2949.1
Unique NamemRNA_L-elsbetiae_contig1393.2949.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1393.2949.1 vs. uniprot
Match: D8LES6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LES6_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.330e-51
Identity = 89/99 (89.90%), Postives = 95/99 (95.96%), Query Frame = 2 
Query:    2 EPFRVTLPRSQLSTLVLNGKSPAAAKLAAHGVVCEVCSIAAASKSVLAVCVACDSAYHLACVEPALPRVPFHDWFCGDCAQDGVTAEDLARGPSGLFSA 298
            EPFRVTLP++QLSTL+LNGKSPAAAKLAAHGVVCEVCSIAAASK+VL VCVACDSAYHL CVEPALPR+PFHDWFCGDCA DG TAEDLARGPSGLFS+
Sbjct:  315 EPFRVTLPKTQLSTLILNGKSPAAAKLAAHGVVCEVCSIAAASKNVLVVCVACDSAYHLGCVEPALPRMPFHDWFCGDCATDGNTAEDLARGPSGLFSS 413
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1393.2949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LES6_ECTSI1.330e-5189.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1393contigL-elsbetiae_contig1393:5956..7119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size365
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.6779768-CDS-L-elsbetiae_contig1393:5957..60761622815547.6779768-CDS-L-elsbetiae_contig1393:5957..6076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1393 5958..6076 -
1691682952.4650214-CDS-L-elsbetiae_contig1393:5957..60761691682952.4650214-CDS-L-elsbetiae_contig1393:5957..6076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1393 5958..6076 -
1622815547.6945043-CDS-L-elsbetiae_contig1393:6875..71191622815547.6945043-CDS-L-elsbetiae_contig1393:6875..7119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1393 6876..7119 -
1691682952.4770198-CDS-L-elsbetiae_contig1393:6875..71191691682952.4770198-CDS-L-elsbetiae_contig1393:6875..7119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1393 6876..7119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1393.2949.1prot_L-elsbetiae_contig1393.2949.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1393 5958..7119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1393.2949.1

>prot_L-elsbetiae_contig1393.2949.1 ID=prot_L-elsbetiae_contig1393.2949.1|Name=mRNA_L-elsbetiae_contig1393.2949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
GAFQGDAAPVAAVDPRAQREVPGGRQAGGARRRLRGVQHRRRLQERPRRV
RGVRQRLPPGVRGAGPAEGSVSRLVLRGLRPGRGHRGRPSQGPERAVLGP
GNLLLLLLLLLLLRRRRFPDR
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mRNA from alignment at L-elsbetiae_contig1393:5956..7119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1393.2949.1 ID=mRNA_L-elsbetiae_contig1393.2949.1|Name=mRNA_L-elsbetiae_contig1393.2949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig1393:5956..7119- (Laminarionema elsbetiae ELsaHSoW15)
GGAGCCTTTCAGGGTGACGCTGCCCCGGTCGCAGCTGTCGACCCTCGTGC
TCAACGGGAAGTCCCCGGCGGCCGCCAAGCTGGCGGCGCACGGCGTCGTC
TGCGAGGTGTGCAGCATCGCCGCCGCCTCCAAGAGCGTCCTCGCCGTGTG
CGTGGCGTGCGACAGCGCCTACCACCTGGCGTGCGTGGAGCCGGCCCTGC
CGAGGGTTCCGTTTCACGACTGGTTCTGCGGGGACTGCGCCCAGGTGTGT
GTGTGTGTGTGTGTTTGTTTGTTTGTTTGGGTGACGAGTATCTAGATGGG
TGCGGCCTCGGTTTGTCTTGTATTCGTGTGTGTGTGCGTGTGTGTTATTT
TTGGCTTGACATGCCTTATGTTGTTTCCTTTTGTGGGAAAAGACCGCGCC
CGTCCTTTTTTGCCTTTGCGCCCTGGGCATGTCAGGCAGACACTTCGCCA
ATAAAGGATGCATATTGTAAATGGTCTGCAAATGATCTCCTTCCGAGGCG
TGAATGAACCATGGATAGGACTTTTGGTCGGGGATTCCCGAGCCGTCGTC
GTGCTGATAAATAATACTTCGGTTTTTGTTTTGTTTCTACATACATATAT
GCGAGTCTCCTGGTAAAGGCTTATTCCTGTGATCAGTGTATGTAGACGGC
TCTACGCAGCCCGCTGTGCCGTAGGTACATACCATCGTTGGGCGAGTGAC
TGAGCCCCCGTGACCTGGTCGTATCTGGCATCGTATCATAGCATATCTCA
ACGTGGCGGGTGAATCTCCCGGCACGGCAAGGAAACATGCATCCAACCTA
TGTATCCACCGAGAAGCAGGTTAGTTACCCCCACGTCAGAAGGCCTTCGT
ATGACATGACATGTTGTAGCTGTTGGCATGACATGACTTGACGTCACCGG
ACTGCCCTATCCGCGACACGGCGGCGGCGGCGGTGGGCCGAGCACGTTGG
CCTTACCCCCCCCTTTCCTCCGAACCCCGCCATCCCCCACCTCCCGCTGC
CGCCGCCGCCGCCGCTCAAACTCGCGCGCCTGCCTGAATGTAGGACGGGG
TCACCGCGGAAGACCTAGCCAGGGGCCCGAGCGGGCTGTTCTCGGCCCTG
GGAACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGC
TTCCCGGACCGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1393:5956..7119-

>mRNA_L-elsbetiae_contig1393.2949.1 ID=mRNA_L-elsbetiae_contig1393.2949.1|Name=mRNA_L-elsbetiae_contig1393.2949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig1393:5956..7119- (Laminarionema elsbetiae ELsaHSoW15)
GGAGCCTTTCAGGGTGACGCTGCCCCGGTCGCAGCTGTCGACCCTCGTGC
TCAACGGGAAGTCCCCGGCGGCCGCCAAGCTGGCGGCGCACGGCGTCGTC
TGCGAGGTGTGCAGCATCGCCGCCGCCTCCAAGAGCGTCCTCGCCGTGTG
CGTGGCGTGCGACAGCGCCTACCACCTGGCGTGCGTGGAGCCGGCCCTGC
CGAGGGTTCCGTTTCACGACTGGTTCTGCGGGGACTGCGCCCAGGGAGCC
TTTCAGGGTGACGCTGCCCCGGTCGCAGCTGTCGACCCTCGTGCTCAACG
GGAAGTCCCCGGCGGCCGCCAAGCTGGCGGCGCACGGCGTCGTCTGCGAG
GTGTGCAGCATCGCCGCCGCCTCCAAGAGCGTCCTCGCCGTGTGCGTGGC
GTGCGACAGCGCCTACCACCTGGCGTGCGTGGAGCCGGCCCTGCCGAGGG
TTCCGTTTCACGACTGGTTCTGCGGGGACTGCGCCCAGGACGGGGTCACC
GCGGAAGACCTAGCCAGGGGCCCGAGCGGGCTGTTCTCGGCCCTGGGAAC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCTTCCC
GGACCGCGACGGGGTCACCGCGGAAGACCTAGCCAGGGGCCCGAGCGGGC
TGTTCTCGGCCCTGGGAACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCGCCGCCGCCGCTTCCCGGACCGC
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