mRNA_L-elsbetiae_contig13918.2947.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13918.2947.1
Unique NamemRNA_L-elsbetiae_contig13918.2947.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13918.2947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13918contigL-elsbetiae_contig13918:117..470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size355
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.6391332-CDS-L-elsbetiae_contig13918:116..4701622815547.6391332-CDS-L-elsbetiae_contig13918:116..470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13918 117..470 +
1691682952.4535286-CDS-L-elsbetiae_contig13918:116..4701691682952.4535286-CDS-L-elsbetiae_contig13918:116..470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13918 117..470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13918.2947.1prot_L-elsbetiae_contig13918.2947.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13918 117..470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13918.2947.1

>prot_L-elsbetiae_contig13918.2947.1 ID=prot_L-elsbetiae_contig13918.2947.1|Name=mRNA_L-elsbetiae_contig13918.2947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MALPVLLAASKSVSAVTLTSRGTCPLASPLFCPSGPRTEGPKTTCRSPLR
VPPLCAAAPLVVAPSCWIPPDSSLLRDDSTCSTRPVSLLNWSESEVTSLR
RDAASRTSSPPPRGLPVL
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mRNA from alignment at L-elsbetiae_contig13918:117..470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13918.2947.1 ID=mRNA_L-elsbetiae_contig13918.2947.1|Name=mRNA_L-elsbetiae_contig13918.2947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig13918:117..470+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCTCCCCGTGCTGCTGGCAGCATCAAAATCGGTGTCAGCGGTTAC
TCTCACCTCTCGAGGGACGTGCCCTCTAGCTTCGCCGCTGTTCTGCCCGT
CTGGGCCGAGAACCGAAGGACCGAAGACCACCTGCCGATCTCCGCTCCGA
GTGCCACCGCTGTGCGCCGCGGCACCTCTAGTAGTAGCACCCTCCTGCTG
GATACCACCTGACTCCTCGCTGCTCCGTGATGACAGCACTTGCTCAACCA
GGCCAGTTAGCCTACTTAACTGGTCTGAGAGTGAGGTCACATCTCTGCGA
AGAGATGCGGCTTCGAGAACATCCTCGCCTCCTCCGCGGGGACTGCCCGT
GTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13918:117..470+

>mRNA_L-elsbetiae_contig13918.2947.1 ID=mRNA_L-elsbetiae_contig13918.2947.1|Name=mRNA_L-elsbetiae_contig13918.2947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig13918:117..470+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCTCCCCGTGCTGCTGGCAGCATCAAAATCGGTGTCAGCGGTTAC
TCTCACCTCTCGAGGGACGTGCCCTCTAGCTTCGCCGCTGTTCTGCCCGT
CTGGGCCGAGAACCGAAGGACCGAAGACCACCTGCCGATCTCCGCTCCGA
GTGCCACCGCTGTGCGCCGCGGCACCTCTAGTAGTAGCACCCTCCTGCTG
GATACCACCTGACTCCTCGCTGCTCCGTGATGACAGCACTTGCTCAACCA
GGCCAGTTAGCCTACTTAACTGGTCTGAGAGTGAGGTCACATCTCTGCGA
AGAGATGCGGCTTCGAGAACATCCTCGCCTCCTCCGCGGGGACTGCCCGT
GTTGATGGCGCTCCCCGTGCTGCTGGCAGCATCAAAATCGGTGTCAGCGG
TTACTCTCACCTCTCGAGGGACGTGCCCTCTAGCTTCGCCGCTGTTCTGC
CCGTCTGGGCCGAGAACCGAAGGACCGAAGACCACCTGCCGATCTCCGCT
CCGAGTGCCACCGCTGTGCGCCGCGGCACCTCTAGTAGTAGCACCCTCCT
GCTGGATACCACCTGACTCCTCGCTGCTCCGTGATGACAGCACTTGCTCA
ACCAGGCCAGTTAGCCTACTTAACTGGTCTGAGAGTGAGGTCACATCTCT
GCGAAGAGATGCGGCTTCGAGAACATCCTCGCCTCCTCCGCGGGGACTGC
CCGTGTTG
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