mRNA_L-elsbetiae_contig13911.2944.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13911.2944.1
Unique NamemRNA_L-elsbetiae_contig13911.2944.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13911.2944.1 vs. uniprot
Match: D8LNZ5_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ5_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.430e-61
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1
Query:    1 DDVEIRRSKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPAESNMHETLSALR 312
            DDVEIRRSKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSP+ESNMHETLSALR
Sbjct:  243 DDVEIRRSKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPSESNMHETLSALR 346          
BLAST of mRNA_L-elsbetiae_contig13911.2944.1 vs. uniprot
Match: A0A6H5KW93_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW93_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 3.050e-60
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1
Query:    1 DDVEIRRSKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPAESNMHETLSALR 312
            DDVEIRRSKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSP+ESNMHETLSALR
Sbjct:  243 DDVEIRRSKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPSESNMHETLSALR 346          
BLAST of mRNA_L-elsbetiae_contig13911.2944.1 vs. uniprot
Match: A0A835YP33_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP33_9STRA)

HSP 1 Score: 196 bits (497), Expect = 3.700e-59
Identity = 94/104 (90.38%), Postives = 101/104 (97.12%), Query Frame = 1
Query:    1 DDVEIRRSKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPAESNMHETLSALR 312
            DD+EIR+SKFHFVDLAGSERAKRTGA GQRF+EG++INKGLLTLGNVISALGD+ KRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPAE NMHET+SALR
Sbjct:  272 DDLEIRKSKFHFVDLAGSERAKRTGAEGQRFREGIEINKGLLTLGNVISALGDEAKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPAEVNMHETISALR 375          
BLAST of mRNA_L-elsbetiae_contig13911.2944.1 vs. uniprot
Match: A0A7S1UH50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UH50_9STRA)

HSP 1 Score: 172 bits (435), Expect = 4.940e-53
Identity = 81/97 (83.51%), Postives = 94/97 (96.91%), Query Frame = 1
Query:   22 SKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPAESNMHETLSALR 312
            SKFHFVDLAGSERAKRTGA+G+R +EG+DIN+GLLTLGNVISALGDD KRG+VHVPYRDSKLTRMLQDSLGGNS+T+MICCVSP++SN+ E+L+ALR
Sbjct:   11 SKFHFVDLAGSERAKRTGATGKRLREGIDINRGLLTLGNVISALGDDKKRGRVHVPYRDSKLTRMLQDSLGGNSKTVMICCVSPSDSNLSESLNALR 107          
BLAST of mRNA_L-elsbetiae_contig13911.2944.1 vs. uniprot
Match: A0A7S4D722_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D722_HETAK)

HSP 1 Score: 167 bits (422), Expect = 7.750e-51
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = 1
Query:    7 VEIRRSKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPAESNMHETLSAL 309
            VE RRSKFHFVDLAGSER K+TGA+GQR +EG+DINKGLL LGNVISALGD   RG+VHVPYRDSKLTR+LQDSLGGNS+TL ICC SPA++N HET +AL
Sbjct:    4 VETRRSKFHFVDLAGSERIKKTGATGQRLREGIDINKGLLVLGNVISALGDPRLRGRVHVPYRDSKLTRLLQDSLGGNSKTLFICCCSPADTNAHETEAAL 104          
BLAST of mRNA_L-elsbetiae_contig13911.2944.1 vs. uniprot
Match: A0A7S3HGL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGL2_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.330e-50
Identity = 79/94 (84.04%), Postives = 85/94 (90.43%), Query Frame = 1
Query:   10 EIRRSKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPAESNMH 291
            E+RRSKFHFVDLAGSERAKRTGA G + KEG+DINKGLL LGNVISALGDDTKRGK  VPYRDSKLTRMLQDSLGGNS+TLMICCVSP+  N +
Sbjct:   21 EVRRSKFHFVDLAGSERAKRTGAQGHQLKEGIDINKGLLALGNVISALGDDTKRGKAFVPYRDSKLTRMLQDSLGGNSKTLMICCVSPSSLNFN 114          
BLAST of mRNA_L-elsbetiae_contig13911.2944.1 vs. uniprot
Match: A0A7R9YCA0_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCA0_9STRA)

HSP 1 Score: 171 bits (434), Expect = 8.700e-50
Identity = 81/97 (83.51%), Postives = 94/97 (96.91%), Query Frame = 1
Query:   22 SKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPAESNMHETLSALR 312
            SKFHFVDLAGSERAKRTGA+G+R +EG+DIN+GLLTLGNVISALGD+ KRG+VHVPYRDSKLTRMLQDSLGGNS+T+MICCVSP++SNM E+L+ALR
Sbjct:   18 SKFHFVDLAGSERAKRTGATGKRLREGIDINRGLLTLGNVISALGDEKKRGRVHVPYRDSKLTRMLQDSLGGNSKTVMICCVSPSDSNMSESLNALR 114          
BLAST of mRNA_L-elsbetiae_contig13911.2944.1 vs. uniprot
Match: A0A8J9SDR6_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SDR6_PHATR)

HSP 1 Score: 155 bits (391), Expect = 1.240e-46
Identity = 77/100 (77.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query:   13 IRRSKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPAESNMHETLSALR 312
            I+RSKF+FVDLAGSER KRT + GQR KEG+DINKGLL LGNVISALGD  KRGK  VPYRDSKLTR+LQ SLGGN QTLMI CVSPA SN+ E+L+ LR
Sbjct:   15 IKRSKFNFVDLAGSERQKRTQSQGQRLKEGIDINKGLLVLGNVISALGDPKKRGKTFVPYRDSKLTRLLQGSLGGNHQTLMIACVSPASSNLEESLNCLR 114          
BLAST of mRNA_L-elsbetiae_contig13911.2944.1 vs. uniprot
Match: A0A8K1FFE2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFE2_PYTOL)

HSP 1 Score: 168 bits (426), Expect = 2.290e-46
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 1
Query:    1 DDVEIRRSKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPAESNMHETLSALR 312
            DD E R S F+FVDLAGSER KRT A G+R KEG+DINKGLL LGNVISALGDD KRG+VHVPYRDSKLTRMLQDSLGGNS+TLM+CCVSPA+ N  ETL+AL+
Sbjct:  245 DDFETRTSYFNFVDLAGSERQKRTQAEGKRLKEGIDINKGLLALGNVISALGDDKKRGRVHVPYRDSKLTRMLQDSLGGNSRTLMLCCVSPADVNFEETLNALK 348          
BLAST of mRNA_L-elsbetiae_contig13911.2944.1 vs. uniprot
Match: A0A2R5GNU9_9STRA (Kinesin-like protein KIN-4A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNU9_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.140e-46
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 1
Query:    1 DDVEIRRSKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISALGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPAESNMHETLSALR 312
            DDVE R +KFHFVDLAGSERAKRTGA+G R KEG++INKGLL LGNVISALGD+TK    HVPYRDSKLTRMLQDSLGGNS+TLMI CVSPA++N  ETL+ALR
Sbjct:  276 DDVEYRIAKFHFVDLAGSERAKRTGATGTRLKEGININKGLLALGNVISALGDETKPKGTHVPYRDSKLTRMLQDSLGGNSRTLMIACVSPADANFEETLNALR 379          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13911.2944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNZ5_ECTSI1.430e-6199.04Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KW93_9PHAE3.050e-6099.04Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A835YP33_9STRA3.700e-5990.38Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A7S1UH50_9STRA4.940e-5383.51Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4D722_HETAK7.750e-5179.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3HGL2_9STRA1.330e-5084.04Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7R9YCA0_9STRA8.700e-5083.51Kinesin-like protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A8J9SDR6_PHATR1.240e-4677.00Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A8K1FFE2_PYTOL2.290e-4678.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2R5GNU9_9STRA3.140e-4679.81Kinesin-like protein KIN-4A n=1 Tax=Hondaea fermen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13911contigL-elsbetiae_contig13911:3006..3753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue1.3e-51
Seed eggNOG ortholog2880.D8LNZ5
KEGG koko:K10395
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Ec32 ortholog descriptionKinesin motor domain
Ec32 orthologEc-01_000540.1
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.4125853-CDS-L-elsbetiae_contig13911:3005..32181622815547.4125853-CDS-L-elsbetiae_contig13911:3005..3218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13911 3006..3218 -
1691682952.322198-CDS-L-elsbetiae_contig13911:3005..32181691682952.322198-CDS-L-elsbetiae_contig13911:3005..3218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13911 3006..3218 -
1622815547.424954-CDS-L-elsbetiae_contig13911:3654..37531622815547.424954-CDS-L-elsbetiae_contig13911:3654..3753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13911 3655..3753 -
1691682952.337867-CDS-L-elsbetiae_contig13911:3654..37531691682952.337867-CDS-L-elsbetiae_contig13911:3654..3753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13911 3655..3753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13911.2944.1prot_L-elsbetiae_contig13911.2944.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13911 3006..3753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13911.2944.1

>prot_L-elsbetiae_contig13911.2944.1 ID=prot_L-elsbetiae_contig13911.2944.1|Name=mRNA_L-elsbetiae_contig13911.2944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
DDVEIRRSKFHFVDLAGSERAKRTGASGQRFKEGVDINKGLLTLGNVISA
LGDDTKRGKVHVPYRDSKLTRMLQDSLGGNSQTLMICCVSPAESNMHETL
SALR
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mRNA from alignment at L-elsbetiae_contig13911:3006..3753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13911.2944.1 ID=mRNA_L-elsbetiae_contig13911.2944.1|Name=mRNA_L-elsbetiae_contig13911.2944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=748bp|location=Sequence derived from alignment at L-elsbetiae_contig13911:3006..3753- (Laminarionema elsbetiae ELsaHSoW15)
GATGACGTGGAAATCCGGCGATCGAAGTTTCACTTTGTCGACCTCGCAGG ATCTGAGAGGGCCAAGCGCACGGGGGCTTCCGGCCAGCGCTTCAAAGAGG TACATATGGTGCTTTTTTGTTGTTGTTGGTTTTGGCCCAGCAGAACTGGT TCCAAATCGGAACCTGGGGTCATGGTTGGAGCTCAGAACTCAGAACAACT TGTGGAGCTACTGGGGATCCGTGAATATTACTTAAGAGTTGTTAAGGCTG GGATGCTCTGCGGAGTGCAAACCGCTGGTGATGTATATTTTTTGTGGAAG TGCGGTTCGAAGGCCTTACTTGCCTCACATACATACCTTAGAAGGCCGTG GTCTGCTACGCTGCGTGTCCAAGCCGTTTCATTTTTTGCGTGGTCTCTCC AGCCGACAGCGCATGGGGTTGCTCGCTTGCCCGTAACACTACTGTAGAGC CATAAAAACGATACTTGTGTTGCCCGATACAACGTTTGTTTGTTTTTTCC GGGCTTGGCTTGACCTACCTGCCTATGTTATCCAGGGTGTGGACATCAAC AAGGGGTTGCTGACGCTCGGAAACGTCATCAGCGCGCTCGGTGACGACAC GAAGCGAGGCAAGGTGCACGTCCCCTACCGGGACTCGAAGCTGACGCGAA TGCTGCAGGACTCGCTGGGTGGCAACAGCCAGACGCTCATGATCTGCTGC GTTTCCCCGGCGGAGTCCAACATGCACGAGACGCTCAGCGCGCTACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13911:3006..3753-

>mRNA_L-elsbetiae_contig13911.2944.1 ID=mRNA_L-elsbetiae_contig13911.2944.1|Name=mRNA_L-elsbetiae_contig13911.2944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig13911:3006..3753- (Laminarionema elsbetiae ELsaHSoW15)
GATGACGTGGAAATCCGGCGATCGAAGTTTCACTTTGTCGACCTCGCAGG
ATCTGAGAGGGCCAAGCGCACGGGGGCTTCCGGCCAGCGCTTCAAAGAGG
ATGACGTGGAAATCCGGCGATCGAAGTTTCACTTTGTCGACCTCGCAGGA
TCTGAGAGGGCCAAGCGCACGGGGGCTTCCGGCCAGCGCTTCAAAGAGGG
TGTGGACATCAACAAGGGGTTGCTGACGCTCGGAAACGTCATCAGCGCGC
TCGGTGACGACACGAAGCGAGGCAAGGTGCACGTCCCCTACCGGGACTCG
AAGCTGACGCGAATGCTGCAGGACTCGCTGGGTGGCAACAGCCAGACGCT
CATGATCTGCTGCGTTTCCCCGGCGGAGTCCAACATGCACGAGACGCTCA
GCGCGCTACGGGGTGTGGACATCAACAAGGGGTTGCTGACGCTCGGAAAC
GTCATCAGCGCGCTCGGTGACGACACGAAGCGAGGCAAGGTGCACGTCCC
CTACCGGGACTCGAAGCTGACGCGAATGCTGCAGGACTCGCTGGGTGGCA
ACAGCCAGACGCTCATGATCTGCTGCGTTTCCCCGGCGGAGTCCAACATG
CACGAGACGCTCAGCGCGCTACGG
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